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Molybdenum in PDB 7d6o: Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol.

Enzymatic activity of Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol.

All present enzymatic activity of Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol.:
1.17.1.4; 1.17.3.2;

Protein crystallography data

The structure of Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol., PDB code: 7d6o was solved by K.Okamoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.48 / 1.99
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 167.704, 123.49, 150.089, 90, 90.9, 90
R / Rfree (%) 19 / 22.8

Other elements in 7d6o:

The structure of Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol. also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Iron (Fe) 8 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol. (pdb code 7d6o). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol., PDB code: 7d6o:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 7d6o

Go back to Molybdenum Binding Sites List in 7d6o
Molybdenum binding site 1 out of 2 in the Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol.


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1404

b:28.1
occ:1.00
MO A:MOS1404 0.0 28.1 1.0
O2 A:MOS1404 1.9 31.1 1.0
O1 A:MOS1404 1.9 30.5 1.0
S A:MOS1404 2.3 43.8 1.0
S2' A:MTE1403 2.4 27.3 1.0
S1' A:MTE1403 2.4 25.9 1.0
C2' A:MTE1403 3.3 26.2 1.0
C1' A:MTE1403 3.3 25.2 1.0
OE2 A:GLU1261 3.8 24.9 1.0
CA A:GLY799 4.1 22.1 1.0
CD A:GLU1261 4.1 25.8 1.0
N A:ALA1079 4.2 25.6 1.0
N A:GLY799 4.2 21.1 1.0
CA A:ALA1078 4.3 24.5 1.0
NE2 A:GLN767 4.4 22.9 1.0
CB A:ALA1078 4.4 26.6 1.0
N A:ARG912 4.4 20.3 1.0
CA A:ARG912 4.5 21.4 1.0
CG A:GLU1261 4.5 22.4 1.0
C A:PHE798 4.6 21.6 1.0
OE1 A:GLU1261 4.6 28.0 1.0
C3' A:MTE1403 4.7 29.0 1.0
C6 A:MTE1403 4.7 24.2 1.0
C A:ALA1078 4.8 25.7 1.0
O A:PHE798 4.8 22.9 1.0
OE2 A:GLU802 5.0 35.0 1.0

Molybdenum binding site 2 out of 2 in 7d6o

Go back to Molybdenum Binding Sites List in 7d6o
Molybdenum binding site 2 out of 2 in the Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol.


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Oxidized Structure of Bovine Xanthine Oxidoreductase Bound with Oxypurinol. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo1404

b:27.7
occ:1.00
MO B:MOS1404 0.0 27.7 1.0
O2 B:MOS1404 1.8 28.8 1.0
O1 B:MOS1404 1.9 35.8 1.0
S B:MOS1404 2.3 41.5 1.0
S1' B:MTE1403 2.4 23.9 1.0
S2' B:MTE1403 2.4 24.6 1.0
C1' B:MTE1403 3.3 23.0 1.0
C2' B:MTE1403 3.3 23.7 1.0
OE2 B:GLU1261 3.7 27.9 1.0
CA B:GLY799 4.1 18.9 1.0
CD B:GLU1261 4.1 26.2 1.0
N B:ALA1079 4.2 28.1 1.0
N B:GLY799 4.2 20.9 1.0
CA B:ALA1078 4.2 27.8 1.0
CB B:ALA1078 4.3 29.6 1.0
NE2 B:GLN767 4.5 22.2 1.0
CA B:ARG912 4.5 25.5 1.0
C B:PHE798 4.5 22.6 1.0
CG B:GLU1261 4.5 24.3 1.0
N B:ARG912 4.6 23.7 1.0
O B:PHE798 4.7 23.5 1.0
OE1 B:GLU1261 4.7 30.1 1.0
C6 B:MTE1403 4.7 22.2 1.0
O6 B:1411408 4.7 53.4 1.0
C3' B:MTE1403 4.8 24.4 1.0
C B:ALA1078 4.8 27.3 1.0
OE2 B:GLU802 4.9 29.0 1.0

Reference:

K.Okamoto, T.Nishino. Bovine Xanthine Oxidoreductase Bounf with Oxypurinol (Oxidized Form) To Be Published.
Page generated: Fri Nov 5 15:46:36 2021

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