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Molybdenum in PDB 1eoi: Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate

Enzymatic activity of Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate

All present enzymatic activity of Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate:
3.1.3.2;

Protein crystallography data

The structure of Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate, PDB code: 1eoi was solved by K.Ishikawa, Y.Mihara, K.Gondoh, E.Suzuki, Y.Asano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.600, 86.600, 205.300, 90.00, 90.00, 120.00
R / Rfree (%) 21.2 / 28

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate (pdb code 1eoi). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 3 binding sites of Molybdenum where determined in the Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate, PDB code: 1eoi:
Jump to Molybdenum binding site number: 1; 2; 3;

Molybdenum binding site 1 out of 3 in 1eoi

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Molybdenum binding site 1 out of 3 in the Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1001

b:41.3
occ:1.00
MO A:MOO1001 0.0 41.3 1.0
O4 A:MOO1001 1.7 28.2 1.0
O1 A:MOO1001 1.7 11.6 1.0
O3 A:MOO1001 1.8 37.4 1.0
O2 A:MOO1001 1.8 46.0 1.0
NE2 A:HIS189 2.1 24.8 1.0
CE1 A:HIS189 3.0 21.5 1.0
CD2 A:HIS189 3.1 16.4 1.0
NH1 A:ARG183 3.5 42.3 1.0
NE A:ARG183 3.7 40.8 1.0
N A:GLY149 3.7 27.9 1.0
NH2 A:ARG122 3.7 38.8 1.0
ND1 A:HIS150 3.9 44.6 1.0
OG A:SER148 3.9 21.4 1.0
N A:HIS150 3.9 33.4 1.0
CZ A:ARG183 4.1 43.5 1.0
ND1 A:HIS189 4.1 12.0 1.0
CG A:HIS189 4.2 5.3 1.0
CG A:HIS150 4.4 42.1 1.0
CA A:SER148 4.4 14.9 1.0
CB A:HIS150 4.4 34.0 1.0
CA A:GLY149 4.5 30.2 1.0
C A:SER148 4.5 24.8 1.0
CB A:SER148 4.6 14.3 1.0
CE1 A:HIS150 4.6 42.2 1.0
C A:GLY149 4.7 34.7 1.0
CD1 A:LEU140 4.7 49.2 1.0
CZ A:ARG122 4.8 41.1 1.0
CA A:HIS150 4.8 33.5 1.0
NZ A:LYS115 4.8 26.1 1.0
CD A:ARG183 4.9 39.3 1.0
CG A:ARG183 4.9 36.4 1.0

Molybdenum binding site 2 out of 3 in 1eoi

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Molybdenum binding site 2 out of 3 in the Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo1002

b:30.1
occ:1.00
MO B:MOO1002 0.0 30.1 1.0
O1 B:MOO1002 1.7 16.7 1.0
O2 B:MOO1002 1.7 27.3 1.0
O4 B:MOO1002 1.8 46.0 1.0
O3 B:MOO1002 1.8 14.4 1.0
NE2 B:HIS189 2.1 41.8 1.0
CE1 B:HIS189 3.0 36.0 1.0
CD2 B:HIS189 3.1 36.2 1.0
NH1 B:ARG183 3.2 35.8 1.0
N B:GLY149 3.4 28.4 1.0
ND1 B:HIS150 3.8 33.5 1.0
NH2 B:ARG122 3.9 22.9 1.0
NE B:ARG183 3.9 37.8 1.0
N B:HIS150 4.0 10.0 1.0
CZ B:ARG183 4.1 40.1 1.0
OG B:SER148 4.1 24.4 1.0
NH1 B:ARG122 4.1 23.6 1.0
ND1 B:HIS189 4.2 31.0 1.0
CA B:GLY149 4.2 16.0 1.0
CA B:SER148 4.2 23.8 1.0
C B:SER148 4.2 28.9 1.0
CG B:HIS189 4.2 34.7 1.0
CB B:SER148 4.2 25.5 1.0
O B:HOH1041 4.3 40.4 1.0
CE1 B:HIS150 4.4 31.9 1.0
CZ B:ARG122 4.5 17.3 1.0
CD2 B:LEU140 4.6 21.4 1.0
CG B:HIS150 4.6 29.7 1.0
C B:GLY149 4.7 12.6 1.0
NZ B:LYS115 4.7 14.8 1.0
CD1 B:LEU140 4.8 21.4 1.0
CB B:HIS150 4.8 19.8 1.0

Molybdenum binding site 3 out of 3 in 1eoi

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Molybdenum binding site 3 out of 3 in the Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Crystal Structure of Acid Phosphatase From Escherichia Blattae Complexed with the Transition State Analog Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo1003

b:29.2
occ:1.00
MO C:MOO1003 0.0 29.2 1.0
O2 C:MOO1003 1.7 2.7 1.0
O4 C:MOO1003 1.7 10.9 1.0
O1 C:MOO1003 1.7 40.1 1.0
O3 C:MOO1003 1.8 35.4 1.0
NE2 C:HIS189 2.0 26.1 1.0
CE1 C:HIS189 3.0 24.9 1.0
CD2 C:HIS189 3.1 23.1 1.0
N C:GLY149 3.7 21.5 1.0
ND1 C:HIS150 3.8 37.6 1.0
NH2 C:ARG122 3.8 23.1 1.0
N C:HIS150 3.9 32.4 1.0
NH2 C:ARG183 4.1 25.5 1.0
ND1 C:HIS189 4.1 14.3 1.0
CZ C:ARG183 4.2 27.4 1.0
CG C:HIS189 4.2 15.7 1.0
CB C:HIS150 4.3 39.4 1.0
NE C:ARG183 4.3 20.2 1.0
CA C:GLY149 4.4 28.4 1.0
CA C:SER148 4.4 27.5 1.0
NH1 C:ARG122 4.4 17.5 1.0
C C:SER148 4.4 22.7 1.0
CD1 C:LEU140 4.4 15.5 1.0
OG C:SER148 4.5 26.1 1.0
CG C:HIS150 4.5 36.7 1.0
CZ C:ARG122 4.6 19.5 1.0
C C:GLY149 4.6 32.4 1.0
CB C:SER148 4.7 27.2 1.0
CA C:HIS150 4.7 29.5 1.0
NH1 C:ARG183 4.7 33.7 1.0
CE1 C:HIS150 4.8 36.8 1.0
NZ C:LYS115 4.9 18.3 1.0

Reference:

K.Ishikawa, Y.Mihara, K.Gondoh, E.Suzuki, Y.Asano. X-Ray Structures of A Novel Acid Phosphatase From Escherichia Blattae and Its Complex with the Transition-State Analog Molybdate. Embo J. V. 19 2412 2000.
ISSN: ISSN 0261-4189
PubMed: 10835340
DOI: 10.1093/EMBOJ/19.11.2412
Page generated: Wed Sep 23 13:25:33 2020
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