Atomistry » Molybdenum » PDB 1aa6-1n61 » 1fdi
Atomistry »
  Molybdenum »
    PDB 1aa6-1n61 »
      1fdi »

Molybdenum in PDB 1fdi: Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite

Enzymatic activity of Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite

All present enzymatic activity of Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite:
1.2.1.2;

Protein crystallography data

The structure of Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite, PDB code: 1fdi was solved by P.D.Sun, J.C.Boyington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 146.800, 146.800, 81.800, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 28.4

Other elements in 1fdi:

The structure of Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite (pdb code 1fdi). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total only one binding site of Molybdenum was determined in the Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite, PDB code: 1fdi:

Molybdenum binding site 1 out of 1 in 1fdi

Go back to Molybdenum Binding Sites List in 1fdi
Molybdenum binding site 1 out of 1 in the Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Oxidized Form of Formate Dehydrogenase H From E. Coli Complexed with the Inhibitor Nitrite within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo803

b:30.3
occ:1.00
S13 A:MGD801 2.2 27.2 1.0
S12 A:MGD802 2.5 32.0 1.0
S13 A:MGD802 2.5 29.2 1.0
S12 A:MGD801 2.5 30.9 1.0
O1 A:NO2804 2.6 28.6 1.0
SE A:SEC140 2.7 36.5 1.0
CB A:SEC140 3.3 33.5 1.0
C13 A:MGD801 3.4 29.7 1.0
C13 A:MGD802 3.5 28.8 1.0
C12 A:MGD802 3.5 29.4 1.0
C12 A:MGD801 3.5 29.7 1.0
N A:NO2804 3.6 30.7 1.0
CG A:GLN335 4.1 13.0 1.0
CA A:GLY334 4.1 15.0 1.0
N A:GLN335 4.2 13.7 1.0
O2 A:NO2804 4.4 26.6 1.0
CE A:MET297 4.5 16.4 1.0
CA A:SEC140 4.6 32.6 1.0
NH1 A:ARG581 4.6 43.6 1.0
C A:GLY334 4.7 14.1 1.0
N A:GLY334 4.7 17.1 1.0
C14 A:MGD801 4.8 29.8 1.0
C14 A:MGD802 4.9 28.4 1.0
C11 A:MGD802 4.9 28.1 1.0
C11 A:MGD801 4.9 29.5 1.0
CD A:GLN335 5.0 15.6 1.0

Reference:

J.C.Boyington, V.N.Gladyshev, S.V.Khangulov, T.C.Stadtman, P.D.Sun. Crystal Structure of Formate Dehydrogenase H: Catalysis Involving Mo, Molybdopterin, Selenocysteine, and An FE4S4 Cluster. Science V. 275 1305 1997.
ISSN: ISSN 0036-8075
PubMed: 9036855
DOI: 10.1126/SCIENCE.275.5304.1305
Page generated: Tue Dec 15 05:15:19 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy