Atomistry » Molybdenum » PDB 1aa6-1n61 » 1gun
Atomistry »
  Molybdenum »
    PDB 1aa6-1n61 »
      1gun »

Molybdenum in PDB 1gun: Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)

Protein crystallography data

The structure of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial), PDB code: 1gun was solved by A.W.Schuettelkopf, J.A.Harrison, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.61 / 1.83
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 56.810, 78.380, 95.240, 90.00, 90.01, 90.00
R / Rfree (%) 21.5 / 24.8

Other elements in 1gun:

The structure of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) (pdb code 1gun). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 8 binding sites of Molybdenum where determined in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial), PDB code: 1gun:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Molybdenum binding site 1 out of 8 in 1gun

Go back to Molybdenum Binding Sites List in 1gun
Molybdenum binding site 1 out of 8 in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1069

b:30.5
occ:0.25
MO A:MOO1069 0.0 30.5 0.2
O1 A:MOO1069 1.8 27.0 1.0
O4 A:MOO1069 1.8 25.0 1.0
O2 A:MOO1069 1.8 32.2 1.0
O3 A:MOO1069 1.8 16.7 1.0
N A:SER40 3.8 16.9 1.0
CB A:ILE39 4.1 17.8 1.0
CG2 A:ILE39 4.3 20.1 1.0
CA A:ILE39 4.3 17.5 1.0
OG A:SER40 4.3 21.0 1.0
C A:ILE39 4.6 17.1 1.0
CB A:SER40 4.6 19.9 1.0
OG A:SER43 4.6 29.7 1.0
CA A:SER40 4.8 18.0 1.0

Molybdenum binding site 2 out of 8 in 1gun

Go back to Molybdenum Binding Sites List in 1gun
Molybdenum binding site 2 out of 8 in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1070

b:31.9
occ:0.50
MO A:MOO1070 0.0 31.9 0.5
O2 A:MOO1070 1.8 23.7 1.0
O1 A:MOO1070 1.8 30.3 1.0
O3 A:MOO1070 1.8 25.5 1.0
O4 A:MOO1070 1.8 10.5 1.0
OG1 B:THR22 3.8 20.8 1.0
OG1 C:THR22 3.8 20.9 1.0
OG1 A:THR22 3.9 17.8 1.0
N A:VAL20 4.3 17.3 1.0
N B:VAL20 4.3 18.0 1.0
N C:VAL20 4.4 21.3 1.0
N C:VAL21 4.4 20.4 1.0
N A:VAL21 4.4 17.9 1.0
N B:VAL21 4.5 19.0 1.0
N C:THR22 4.6 18.8 1.0
N B:THR22 4.6 18.3 1.0
N A:THR22 4.6 17.2 1.0
CB C:VAL21 4.8 19.3 1.0
CB A:VAL20 4.8 17.6 1.0
CB A:VAL21 4.9 19.3 1.0
CA B:GLY19 4.9 20.9 1.0
CB C:VAL20 4.9 21.6 1.0
CG2 C:THR22 4.9 18.9 1.0
CB B:THR22 5.0 16.6 1.0
CB C:THR22 5.0 20.3 1.0
CA A:VAL20 5.0 18.0 1.0
CG2 B:THR22 5.0 17.6 1.0

Molybdenum binding site 3 out of 8 in 1gun

Go back to Molybdenum Binding Sites List in 1gun
Molybdenum binding site 3 out of 8 in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo1069

b:29.7
occ:0.25
MO B:MOO1069 0.0 29.7 0.2
O2 B:MOO1069 1.8 19.2 1.0
O3 B:MOO1069 1.8 24.4 1.0
O4 B:MOO1069 1.8 28.5 1.0
O1 B:MOO1069 1.8 17.3 1.0
N B:SER40 3.9 17.6 1.0
CB B:ILE39 4.2 18.3 1.0
CA B:ILE39 4.3 18.5 1.0
OG B:SER40 4.4 23.2 1.0
CG2 B:ILE39 4.5 20.1 1.0
C B:ILE39 4.6 17.4 1.0
CB B:SER40 4.6 20.1 1.0
OG B:SER43 4.7 25.0 1.0
CA B:SER40 4.8 19.5 1.0

Molybdenum binding site 4 out of 8 in 1gun

Go back to Molybdenum Binding Sites List in 1gun
Molybdenum binding site 4 out of 8 in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo1069

b:33.4
occ:0.25
MO C:MOO1069 0.0 33.4 0.2
O4 C:MOO1069 1.8 24.0 1.0
O2 C:MOO1069 1.8 29.2 1.0
O3 C:MOO1069 1.8 31.2 1.0
O1 C:MOO1069 1.8 17.8 1.0
N C:SER40 3.8 19.4 1.0
CB C:ILE39 4.2 20.4 1.0
CA C:ILE39 4.2 20.3 1.0
OG C:SER40 4.3 24.6 1.0
CG2 C:ILE39 4.5 22.7 1.0
CB C:SER40 4.5 21.3 1.0
C C:ILE39 4.5 19.0 1.0
OG C:SER43 4.6 34.2 1.0
CA C:SER40 4.7 21.5 1.0

Molybdenum binding site 5 out of 8 in 1gun

Go back to Molybdenum Binding Sites List in 1gun
Molybdenum binding site 5 out of 8 in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mo1070

b:31.9
occ:0.50
MO D:MOO1070 0.0 31.9 0.5
O1 D:MOO1070 1.7 21.9 1.0
O3 D:MOO1070 1.8 24.2 1.0
O4 D:MOO1070 1.8 31.0 1.0
O2 D:MOO1070 1.8 10.5 1.0
OG1 E:THR22 3.8 19.8 1.0
OG1 D:THR22 3.9 17.3 1.0
OG1 F:THR22 4.0 20.5 1.0
N E:VAL20 4.2 20.4 1.0
N D:VAL20 4.2 18.3 1.0
N E:VAL21 4.3 18.9 1.0
N D:VAL21 4.4 18.0 1.0
N F:VAL21 4.4 18.5 1.0
N F:VAL20 4.4 20.2 1.0
N E:THR22 4.5 17.9 1.0
N D:THR22 4.6 16.4 1.0
N F:THR22 4.7 18.7 1.0
CA E:GLY19 4.9 22.0 1.0
CB E:VAL20 4.9 20.6 1.0
CB F:VAL21 4.9 17.9 1.0
CB D:VAL20 4.9 19.1 1.0
CA D:GLY19 4.9 20.4 1.0
CB F:VAL20 4.9 20.4 1.0
CB D:VAL21 4.9 18.9 1.0
CB E:VAL21 4.9 19.1 1.0
CA E:VAL20 4.9 20.0 1.0
C E:GLY19 5.0 21.0 1.0

Molybdenum binding site 6 out of 8 in 1gun

Go back to Molybdenum Binding Sites List in 1gun
Molybdenum binding site 6 out of 8 in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mo1071

b:30.2
occ:0.25
MO D:MOO1071 0.0 30.2 0.2
O4 D:MOO1071 1.8 25.4 1.0
O1 D:MOO1071 1.8 26.2 1.0
O2 D:MOO1071 1.8 32.2 1.0
O3 D:MOO1071 1.8 16.2 1.0
N D:SER40 3.7 16.6 1.0
CB D:ILE39 4.1 17.3 1.0
CA D:ILE39 4.3 16.8 1.0
OG D:SER40 4.3 21.9 1.0
CG2 D:ILE39 4.4 18.9 1.0
CB D:SER40 4.5 19.8 1.0
C D:ILE39 4.5 17.1 1.0
OG D:SER43 4.5 28.6 1.0
CA D:SER40 4.7 18.4 1.0

Molybdenum binding site 7 out of 8 in 1gun

Go back to Molybdenum Binding Sites List in 1gun
Molybdenum binding site 7 out of 8 in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mo1069

b:28.7
occ:0.25
MO E:MOO1069 0.0 28.7 0.2
O1 E:MOO1069 1.8 18.5 1.0
O2 E:MOO1069 1.8 23.8 1.0
O4 E:MOO1069 1.8 28.3 1.0
O3 E:MOO1069 1.8 17.3 1.0
N E:SER40 3.9 18.3 1.0
CB E:ILE39 4.2 18.5 1.0
OG E:SER40 4.3 23.0 1.0
CA E:ILE39 4.3 18.5 1.0
CB E:SER40 4.5 19.7 1.0
CG2 E:ILE39 4.5 20.7 1.0
C E:ILE39 4.6 18.2 1.0
OG E:SER43 4.6 24.9 1.0
CA E:SER40 4.8 19.4 1.0

Molybdenum binding site 8 out of 8 in 1gun

Go back to Molybdenum Binding Sites List in 1gun
Molybdenum binding site 8 out of 8 in the Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of Mopii From Clostridium Pasteurianum Complexed with Molybdate (Partial) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mo1069

b:32.4
occ:0.25
MO F:MOO1069 0.0 32.4 0.2
O4 F:MOO1069 1.8 26.3 1.0
O1 F:MOO1069 1.8 27.9 1.0
O2 F:MOO1069 1.8 30.5 1.0
O3 F:MOO1069 1.8 19.5 1.0
N F:SER40 3.8 18.7 1.0
CB F:ILE39 4.3 19.4 1.0
CA F:ILE39 4.3 19.5 1.0
OG F:SER40 4.3 23.8 1.0
CG2 F:ILE39 4.5 22.6 1.0
CB F:SER40 4.5 20.6 1.0
C F:ILE39 4.6 18.1 1.0
OG F:SER43 4.6 35.9 1.0
CA F:SER40 4.8 20.6 1.0

Reference:

A.W.Schuettelkopf, J.A.Harrison, D.H.Boxer, W.N.Hunter. Passive Acquisition of Ligand By the Mopii Molbindin From Clostridium Pasteurianum: Structures of Apo and Oxyanion-Bound Forms J.Biol.Chem. V. 277 15013 2002.
ISSN: ISSN 0021-9258
PubMed: 11836258
DOI: 10.1074/JBC.M201005200
Page generated: Tue Dec 15 05:15:32 2020

Last articles

Zn in 7OQY
Zn in 7PEL
Zn in 7OYG
Zn in 7P3S
Zn in 7PE7
Zn in 7RZC
Zn in 7PE9
Zn in 7PE8
Zn in 7RAG
Zn in 7RN5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy