Molybdenum in PDB 1h9m: Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
Protein crystallography data
The structure of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound, PDB code: 1h9m
was solved by
L.Delarbre,
C.E.M.Stevenson,
D.J.White,
L.A.Mitchenall,
R.N.Pau,
D.M.Lawson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.00 /
1.65
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.960,
81.960,
93.417,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.1 /
22.6
|
Molybdenum Binding Sites:
The binding sites of Molybdenum atom in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
(pdb code 1h9m). This binding sites where shown within
5.0 Angstroms radius around Molybdenum atom.
In total 8 binding sites of Molybdenum where determined in the
Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound, PDB code: 1h9m:
Jump to Molybdenum binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Molybdenum binding site 1 out
of 8 in 1h9m
Go back to
Molybdenum Binding Sites List in 1h9m
Molybdenum binding site 1 out
of 8 in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 1 of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mo1142
b:21.4
occ:0.33
|
MO
|
A:MOO1142
|
0.0
|
21.4
|
0.3
|
O2
|
A:MOO1142
|
1.8
|
18.0
|
1.0
|
O1
|
A:MOO1142
|
1.8
|
17.3
|
0.3
|
ND2
|
A:ASN94
|
4.3
|
21.6
|
1.0
|
N
|
A:ALA92
|
4.4
|
18.4
|
1.0
|
CG2
|
A:VAL93
|
4.4
|
19.0
|
1.0
|
N
|
A:VAL93
|
4.4
|
20.7
|
1.0
|
N
|
A:ASN94
|
4.4
|
16.6
|
1.0
|
CB
|
A:ALA92
|
4.5
|
20.2
|
1.0
|
CB
|
A:ASN94
|
4.5
|
16.6
|
1.0
|
CG
|
A:ASN94
|
4.9
|
22.2
|
1.0
|
CA
|
A:ALA92
|
5.0
|
17.9
|
1.0
|
|
Molybdenum binding site 2 out
of 8 in 1h9m
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Molybdenum Binding Sites List in 1h9m
Molybdenum binding site 2 out
of 8 in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 2 of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mo1143
b:24.1
occ:0.33
|
MO
|
A:MOO1143
|
0.0
|
24.1
|
0.3
|
O2
|
A:MOO1143
|
1.8
|
18.6
|
1.0
|
O1
|
A:MOO1143
|
1.9
|
18.7
|
0.3
|
CG2
|
A:VAL21
|
4.2
|
16.9
|
1.0
|
N
|
A:VAL21
|
4.3
|
15.9
|
1.0
|
N
|
A:ASN22
|
4.3
|
15.2
|
1.0
|
ND2
|
A:ASN22
|
4.4
|
23.6
|
1.0
|
N
|
A:ALA20
|
4.5
|
19.4
|
1.0
|
CB
|
A:ASN22
|
4.5
|
15.7
|
1.0
|
CB
|
A:ALA20
|
4.7
|
19.3
|
1.0
|
|
Molybdenum binding site 3 out
of 8 in 1h9m
Go back to
Molybdenum Binding Sites List in 1h9m
Molybdenum binding site 3 out
of 8 in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 3 of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mo1144
b:26.5
occ:1.00
|
MO
|
A:MOO1144
|
0.0
|
26.5
|
1.0
|
O3
|
A:MOO1144
|
1.8
|
20.4
|
1.0
|
O1
|
A:MOO1144
|
1.8
|
20.6
|
1.0
|
O2
|
A:MOO1144
|
1.8
|
19.1
|
1.0
|
O4
|
A:MOO1144
|
1.8
|
20.1
|
1.0
|
N
|
A:THR112
|
4.1
|
18.2
|
1.0
|
CA
|
A:VAL111
|
4.3
|
17.4
|
1.0
|
CB
|
A:VAL111
|
4.4
|
19.9
|
1.0
|
CG2
|
A:THR112
|
4.4
|
19.3
|
1.0
|
OG1
|
A:THR112
|
4.4
|
22.0
|
1.0
|
O
|
A:HOH2023
|
4.5
|
26.6
|
1.0
|
CG1
|
A:VAL111
|
4.7
|
22.3
|
1.0
|
C
|
A:VAL111
|
4.7
|
19.6
|
1.0
|
CB
|
A:THR112
|
4.9
|
19.2
|
1.0
|
|
Molybdenum binding site 4 out
of 8 in 1h9m
Go back to
Molybdenum Binding Sites List in 1h9m
Molybdenum binding site 4 out
of 8 in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 4 of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mo1145
b:21.5
occ:1.00
|
MO
|
A:MOO1145
|
0.0
|
21.5
|
1.0
|
O1
|
A:MOO1145
|
1.7
|
14.5
|
1.0
|
O2
|
A:MOO1145
|
1.8
|
16.1
|
1.0
|
O4
|
A:MOO1145
|
1.8
|
15.5
|
1.0
|
O3
|
A:MOO1145
|
1.8
|
17.7
|
1.0
|
N
|
A:THR40
|
3.9
|
14.0
|
1.0
|
CA
|
A:VAL39
|
4.3
|
15.4
|
1.0
|
CB
|
A:VAL39
|
4.3
|
14.2
|
1.0
|
OG1
|
A:THR40
|
4.3
|
17.5
|
1.0
|
OG
|
A:SER43
|
4.3
|
20.6
|
1.0
|
CG2
|
A:THR40
|
4.3
|
17.9
|
1.0
|
CG1
|
A:VAL39
|
4.5
|
18.0
|
1.0
|
O
|
A:HOH2036
|
4.5
|
21.8
|
1.0
|
C
|
A:VAL39
|
4.6
|
18.4
|
1.0
|
CB
|
A:SER43
|
4.8
|
15.4
|
1.0
|
CB
|
A:THR40
|
4.8
|
14.4
|
1.0
|
CA
|
A:THR40
|
5.0
|
14.8
|
1.0
|
|
Molybdenum binding site 5 out
of 8 in 1h9m
Go back to
Molybdenum Binding Sites List in 1h9m
Molybdenum binding site 5 out
of 8 in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 5 of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mo1142
b:54.6
occ:0.33
|
MO
|
B:MOO1142
|
0.0
|
54.6
|
0.3
|
O2
|
B:MOO1142
|
1.8
|
40.4
|
1.0
|
O1
|
B:MOO1142
|
1.9
|
46.5
|
0.3
|
CG2
|
B:VAL21
|
4.0
|
17.6
|
1.0
|
ND2
|
B:ASN22
|
4.2
|
20.1
|
1.0
|
N
|
B:VAL21
|
4.3
|
16.0
|
1.0
|
N
|
B:ASN22
|
4.3
|
14.2
|
1.0
|
CB
|
B:ASN22
|
4.4
|
16.2
|
1.0
|
N
|
B:ALA20
|
4.4
|
20.6
|
1.0
|
CB
|
B:ALA20
|
4.7
|
23.2
|
1.0
|
CG
|
B:ASN22
|
4.8
|
21.1
|
1.0
|
CA
|
B:ASN22
|
5.0
|
17.2
|
1.0
|
|
Molybdenum binding site 6 out
of 8 in 1h9m
Go back to
Molybdenum Binding Sites List in 1h9m
Molybdenum binding site 6 out
of 8 in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 6 of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mo1143
b:37.5
occ:0.33
|
MO
|
B:MOO1143
|
0.0
|
37.5
|
0.3
|
O1
|
B:MOO1143
|
1.7
|
12.2
|
0.3
|
O2
|
B:MOO1143
|
1.8
|
14.3
|
1.0
|
N
|
B:VAL93
|
4.2
|
19.3
|
1.0
|
CG2
|
B:VAL93
|
4.3
|
18.2
|
1.0
|
ND2
|
B:ASN94
|
4.3
|
21.3
|
1.0
|
N
|
B:ALA92
|
4.4
|
17.6
|
1.0
|
CB
|
B:ALA92
|
4.4
|
19.6
|
1.0
|
N
|
B:ASN94
|
4.5
|
15.9
|
1.0
|
CB
|
B:ASN94
|
4.6
|
17.8
|
1.0
|
CA
|
B:ALA92
|
4.9
|
19.1
|
1.0
|
CG
|
B:ASN94
|
5.0
|
23.2
|
1.0
|
|
Molybdenum binding site 7 out
of 8 in 1h9m
Go back to
Molybdenum Binding Sites List in 1h9m
Molybdenum binding site 7 out
of 8 in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 7 of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mo1144
b:27.4
occ:1.00
|
MO
|
B:MOO1144
|
0.0
|
27.4
|
1.0
|
O1
|
B:MOO1144
|
1.8
|
22.4
|
1.0
|
O4
|
B:MOO1144
|
1.8
|
21.6
|
1.0
|
O2
|
B:MOO1144
|
1.8
|
20.4
|
1.0
|
O3
|
B:MOO1144
|
1.8
|
19.2
|
1.0
|
N
|
B:THR112
|
4.1
|
19.1
|
1.0
|
CG2
|
B:THR112
|
4.3
|
19.9
|
1.0
|
CA
|
B:VAL111
|
4.3
|
18.1
|
1.0
|
CB
|
B:VAL111
|
4.4
|
20.6
|
1.0
|
OG1
|
B:THR112
|
4.4
|
23.6
|
1.0
|
O
|
B:HOH2032
|
4.5
|
29.7
|
1.0
|
CG1
|
B:VAL111
|
4.7
|
23.1
|
1.0
|
C
|
B:VAL111
|
4.8
|
19.4
|
1.0
|
CB
|
B:THR112
|
4.9
|
21.5
|
1.0
|
|
Molybdenum binding site 8 out
of 8 in 1h9m
Go back to
Molybdenum Binding Sites List in 1h9m
Molybdenum binding site 8 out
of 8 in the Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 8 of Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity. Peg-Grown Form with Molybdate Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mo1145
b:21.7
occ:1.00
|
MO
|
B:MOO1145
|
0.0
|
21.7
|
1.0
|
O4
|
B:MOO1145
|
1.7
|
14.5
|
1.0
|
O1
|
B:MOO1145
|
1.8
|
15.6
|
1.0
|
O2
|
B:MOO1145
|
1.8
|
18.8
|
1.0
|
O3
|
B:MOO1145
|
1.8
|
16.3
|
1.0
|
N
|
B:THR40
|
3.9
|
13.7
|
1.0
|
CB
|
B:VAL39
|
4.3
|
14.4
|
1.0
|
CA
|
B:VAL39
|
4.3
|
15.6
|
1.0
|
OG1
|
B:THR40
|
4.3
|
18.9
|
1.0
|
CG2
|
B:THR40
|
4.4
|
16.9
|
1.0
|
OG
|
B:SER43
|
4.4
|
20.5
|
1.0
|
O
|
B:HOH2043
|
4.5
|
22.4
|
1.0
|
CG1
|
B:VAL39
|
4.6
|
16.5
|
1.0
|
C
|
B:VAL39
|
4.6
|
16.8
|
1.0
|
CB
|
B:THR40
|
4.8
|
14.0
|
1.0
|
CB
|
B:SER43
|
4.8
|
17.2
|
1.0
|
CA
|
B:THR40
|
5.0
|
13.8
|
1.0
|
|
Reference:
L.Delarbre,
C.E.M.Stevenson,
D.J.White,
L.A.Mitchenall,
R.N.Pau,
D.M.Lawson.
Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest A Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity J.Mol.Biol. V. 308 1063 2001.
ISSN: ISSN 0022-2836
PubMed: 11352591
DOI: 10.1006/JMBI.2001.4636
Page generated: Sun Oct 6 15:21:48 2024
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