Chemical elements
  Molybdenum
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    PDB 1aa6-1qh8
      1aa6
      1amf
      1dgj
      1dmr
      1dms
      1e5v
      1e60
      1e61
      1eoi
      1eu1
      1fdi
      1fdo
      1ffv
      1fiq
      1fo4
      1fp4
      1g20
      1g21
      1g8j
      1g8k
      1gun
      1guo
      1h1l
      1h5n
      1h9j
      1h9m
      1h9s
      1jro
      1jrp
      1kqf
      1kqg
      1m1n
      1m1y
      1m34
      1mio
      1n2c
      1n5w
      1n5x
      1n60
      1n61
      1n62
      1n63
      1o7l
      1ogp
      1ogy
      1p0z
      1q16
      1qgu
      1qh1
      1qh8
    PDB 1r27-2jir
    PDB 2min-3unc
    PDB 3uni-4f6t

Molybdenum in the structure of Crystal Structure of Xanthine Dehydrogenase From Rhodobacter Capsulatus (pdb 1jro)






The binding sites of Molybdenum atom in the structure of Crystal Structure of Xanthine Dehydrogenase From Rhodobacter Capsulatus (pdb code 1jro). This binding sites where shown with 5.0 Angstroms radius around Molybdenum atom.
The 1jro structure was solved by J.J.TRUGLIO, K.THEIS, S.LEIMKUHLER, R.RAPPA, K.V.RAJAGOPALAN, C.KISKER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)50.0-2.7
Space groupP1
a (A)92.875
b (A)141.053
c (A)158.113
alpha (°)109.53
beta (°)105.83
gamma (°)101.33
Rfactor (%)21.3
Rfree (%)25.2


Molybdenum Binding Sites:

Molybdenum binding site 1 out of 4 in 1jro


Molybdenum binding site 1 out of 4 in 1jro
Click to enlarge
stereopicture of Molybdenum binding site 1 out of 4 in 1jro
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Molybdenum in the PDB 1jro. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Gln197, B: Phe228, B: Gly229, B: Arg342, B: Ala528, B: Ala529, B: Glu730, B: Mpn3003, B: Mos3004,

conact list:


AtomAtomDistance (A)
MoNE2 B:Gln1974.74
MoC B:Phe2284.84
MoN B:Gly2294.58
MoCA B:Gly2294.39
MoN B:Arg3424.44
MoCA B:Arg3424.43
MoC B:Ala5284.56
MoCB B:Ala5284.02
MoCA B:Ala5284.17
MoN B:Ala5293.94
MoCA B:Ala5294.97
MoOE1 B:Glu7304.57
MoOE2 B:Glu7302.71
MoCD B:Glu7303.65
MoCG B:Glu7304.24
MoC3' B:Mpn30034.89
MoS1' B:Mpn30032.27
MoC6 B:Mpn30034.61
MoC1' B:Mpn30033.25
MoS2' B:Mpn30032.21
MoC2' B:Mpn30033.38
MoS B:Mos30042.06
MoO1 B:Mos30042.04
MoMO B:Mos30040.00
MoO2 B:Mos30041.71

interactive model:


Molybdenum binding site 2 out of 4 in 1jro


Molybdenum binding site 2 out of 4 in 1jro
Click to enlarge
stereopicture of Molybdenum binding site 2 out of 4 in 1jro
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Molybdenum in the PDB 1jro. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Gln197, D: Phe228, D: Gly229, D: Phe341, D: Arg342, D: Ala528, D: Ala529, D: Glu730, D: Mpn3003, D: Mos3004,

conact list:


AtomAtomDistance (A)
MoNE2 D:Gln1974.74
MoO D:Phe2284.84
MoC D:Phe2284.81
MoN D:Gly2294.60
MoCA D:Gly2294.37
MoC D:Phe3414.96
MoN D:Arg3424.34
MoCA D:Arg3424.41
MoC D:Ala5284.46
MoCB D:Ala5283.95
MoCA D:Ala5284.07
MoN D:Ala5293.84
MoCA D:Ala5294.89
MoOE1 D:Glu7304.76
MoOE2 D:Glu7302.76
MoCD D:Glu7303.81
MoCG D:Glu7304.42
MoS1' D:Mpn30032.37
MoC6 D:Mpn30034.74
MoC1' D:Mpn30033.40
MoS2' D:Mpn30032.21
MoC2' D:Mpn30033.49
MoS D:Mos30042.00
MoO1 D:Mos30042.01
MoMO D:Mos30040.00
MoO2 D:Mos30041.70

interactive model:


Molybdenum binding site 3 out of 4 in 1jro


Molybdenum binding site 3 out of 4 in 1jro
Click to enlarge
stereopicture of Molybdenum binding site 3 out of 4 in 1jro
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Molybdenum in the PDB 1jro. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Gln197, F: Phe228, F: Gly229, F: Phe341, F: Arg342, F: Gly343, F: Ala528, F: Ala529, F: Glu730, F: Mpn3003, F: Mos3004,

conact list:


AtomAtomDistance (A)
MoNE2 F:Gln1974.81
MoO F:Phe2284.93
MoC F:Phe2284.71
MoN F:Gly2294.41
MoCA F:Gly2294.34
MoC F:Phe3414.99
MoN F:Arg3424.38
MoCA F:Arg3424.30
MoN F:Gly3434.87
MoC F:Ala5284.67
MoCB F:Ala5284.42
MoCA F:Ala5284.39
MoN F:Ala5293.96
MoCA F:Ala5294.89
MoOE1 F:Glu7304.40
MoOE2 F:Glu7302.60
MoCD F:Glu7303.51
MoCG F:Glu7304.10
MoS1' F:Mpn30032.17
MoC6 F:Mpn30034.55
MoC1' F:Mpn30033.24
MoS2' F:Mpn30032.45
MoC2' F:Mpn30033.49
MoS F:Mos30042.02
MoO1 F:Mos30042.02
MoMO F:Mos30040.00
MoO2 F:Mos30041.73

interactive model:


Molybdenum binding site 4 out of 4 in 1jro


Molybdenum binding site 4 out of 4 in 1jro
Click to enlarge
stereopicture of Molybdenum binding site 4 out of 4 in 1jro
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Molybdenum in the PDB 1jro. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Gln197, H: Phe228, H: Gly229, H: Phe341, H: Arg342, H: Gly343, H: Ala528, H: Ala529, H: Ser530, H: Glu730, H: Mpn3003, H: Mos3004,

conact list:


AtomAtomDistance (A)
MoNE2 H:Gln1974.94
MoO H:Phe2284.73
MoC H:Phe2284.76
MoN H:Gly2294.70
MoCA H:Gly2294.37
MoC H:Phe3414.98
MoN H:Arg3424.34
MoCA H:Arg3424.27
MoN H:Gly3434.94
MoC H:Ala5284.62
MoCB H:Ala5284.22
MoCA H:Ala5284.26
MoN H:Ala5293.97
MoCA H:Ala5294.96
MoN H:Ser5304.95
MoOE1 H:Glu7304.69
MoOE2 H:Glu7302.69
MoCD H:Glu7303.72
MoCG H:Glu7304.32
MoS1' H:Mpn30032.48
MoC6 H:Mpn30034.72
MoC1' H:Mpn30033.38
MoS2' H:Mpn30032.43
MoC2' H:Mpn30033.52
MoS H:Mos30042.07
MoO1 H:Mos30042.00
MoMO H:Mos30040.00
MoO2 H:Mos30041.70

interactive model:




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