Atomistry » Molybdenum » PDB 1aa6-1n61 » 1n5w
Atomistry »
  Molybdenum »
    PDB 1aa6-1n61 »
      1n5w »

Molybdenum in PDB 1n5w: Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form

Enzymatic activity of Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form

All present enzymatic activity of Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form:
1.2.99.2;

Protein crystallography data

The structure of Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form, PDB code: 1n5w was solved by H.Dobbek, L.Gremer, R.Kiefersauer, R.Huber, O.Meyer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.00 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 119.295, 132.088, 159.825, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 17.1

Other elements in 1n5w:

The structure of Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form also contains other interesting chemical elements:

Iron (Fe) 8 atoms
Copper (Cu) 2 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form (pdb code 1n5w). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form, PDB code: 1n5w:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 1n5w

Go back to Molybdenum Binding Sites List in 1n5w
Molybdenum binding site 1 out of 2 in the Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo3921

b:10.4
occ:1.00
MO B:CUM3921 0.0 10.4 1.0
OM1 B:CUM3921 1.7 9.6 1.0
OM2 B:CUM3921 1.9 11.3 1.0
S B:CUM3921 2.3 9.7 1.0
S7' B:MCN3920 2.5 8.2 1.0
S8' B:MCN3920 2.5 8.2 1.0
OE2 B:GLU763 3.1 10.1 1.0
C7' B:MCN3920 3.5 8.8 1.0
C8' B:MCN3920 3.5 8.8 1.0
CU B:CUM3921 3.7 12.1 0.9
N B:GLY569 3.9 9.5 1.0
O B:HOH4334 3.9 24.7 1.0
CD B:GLU763 3.9 9.3 1.0
CA B:TYR568 4.0 8.8 1.0
CA B:GLY272 4.1 8.6 1.0
N B:GLY272 4.1 8.2 1.0
CB B:TYR568 4.1 9.5 1.0
O B:HOH3970 4.3 9.2 1.0
C B:TYR568 4.5 8.7 1.0
C B:PHE271 4.5 9.4 1.0
N B:ARG387 4.5 8.4 1.0
NE2 B:GLN240 4.6 9.3 1.0
CG B:GLU763 4.6 10.6 1.0
CA B:ARG387 4.6 9.0 1.0
OE1 B:GLU763 4.6 10.1 1.0
O B:PHE271 4.8 10.3 1.0
C6' B:MCN3920 4.9 9.0 1.0
C9' B:MCN3920 5.0 8.9 1.0
CA B:GLY569 5.0 10.1 1.0

Molybdenum binding site 2 out of 2 in 1n5w

Go back to Molybdenum Binding Sites List in 1n5w
Molybdenum binding site 2 out of 2 in the Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of the Cu,Mo-Co Dehydrogenase (Codh); Oxidized Form within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mo4921

b:10.8
occ:1.00
MO E:CUM4921 0.0 10.8 1.0
OM1 E:CUM4921 1.8 10.8 1.0
OM2 E:CUM4921 1.9 10.9 1.0
S E:CUM4921 2.3 10.1 1.0
S7' E:MCN4920 2.5 8.4 1.0
S8' E:MCN4920 2.5 8.7 1.0
OE2 E:GLU763 3.2 11.6 1.0
C8' E:MCN4920 3.4 9.1 1.0
C7' E:MCN4920 3.5 8.8 1.0
CU E:CUM4921 3.7 12.6 0.9
O E:HOH5313 3.9 28.4 1.0
CD E:GLU763 4.0 10.0 1.0
N E:GLY569 4.0 9.9 1.0
CA E:GLY272 4.0 9.4 1.0
CA E:TYR568 4.0 8.8 1.0
N E:GLY272 4.0 9.7 1.0
CB E:TYR568 4.0 9.1 1.0
O E:HOH4926 4.3 10.2 1.0
C E:PHE271 4.4 10.1 1.0
C E:TYR568 4.5 10.1 1.0
N E:ARG387 4.6 10.3 1.0
CG E:GLU763 4.7 10.0 1.0
OE1 E:GLU763 4.7 10.2 1.0
NE2 E:GLN240 4.7 9.2 1.0
CA E:ARG387 4.7 7.7 1.0
O E:PHE271 4.7 10.4 1.0
C9' E:MCN4920 4.9 10.4 1.0
C6' E:MCN4920 4.9 9.4 1.0

Reference:

H.Dobbek, L.Gremer, R.Kiefersauer, R.Huber, O.Meyer. Catalysis at A Dinuclear [Cusmo(=O)Oh] Cluster in A Co Dehydrogenase Resolved at 1.1-A Resolution Proc.Natl.Acad.Sci.Usa V. 99 15971 2002.
ISSN: ISSN 0027-8424
PubMed: 12475995
DOI: 10.1073/PNAS.212640899
Page generated: Tue Dec 15 05:16:01 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy