Molybdenum in PDB 1o7l: Molybdate-Activated Form of Mode From Escherichia Coli

The structure of Molybdate-Activated Form of Mode From Escherichia Coli, PDB code: 1o7l was solved by A.W.Schuttelkopf, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.75
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	78.831, 78.831, 195.099, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 25.4

The structure of Molybdate-Activated Form of Mode From Escherichia Coli also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Calcium	(Ca)	1 atom

The binding sites of Molybdenum atom in the Molybdate-Activated Form of Mode From Escherichia Coli (pdb code 1o7l). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 5 binding sites of Molybdenum where determined in the Molybdate-Activated Form of Mode From Escherichia Coli, PDB code: 1o7l:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5;

Molybdenum binding site 1 out of 5 in the Molybdate-Activated Form of Mode From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Molybdate-Activated Form of Mode From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo1263 b:22.2 occ:1.00 MO A:MOO1263 0.0 22.2 1.0 O1 A:MOO1263 1.8 22.7 1.0 O4 A:MOO1263 1.8 22.1 1.0 O2 A:MOO1263 1.8 20.7 1.0 O3 A:MOO1263 1.8 21.8 1.0 O A:SER126 2.8 33.8 1.0 CG A:LYS183 3.4 23.4 1.0 NZ A:LYS183 3.7 14.1 1.0 C A:SER126 3.7 29.9 1.0 N B:THR163 3.9 27.2 1.0 OG1 B:THR163 4.1 30.1 1.0 CA B:ILE162 4.1 24.4 1.0 CG A:ARG128 4.1 27.1 1.0 CE A:LYS183 4.1 14.4 1.0 OG B:SER166 4.2 25.9 1.0 CB B:ILE162 4.2 23.2 1.0 N A:ARG128 4.2 27.1 1.0 OG A:SER126 4.2 21.3 1.0 CB A:SER126 4.3 27.0 1.0 N A:ALA184 4.3 25.3 1.0 CA A:ALA127 4.3 25.7 1.0 CD A:LYS183 4.4 19.8 1.0 N A:ALA127 4.4 26.9 1.0 CG2 B:THR163 4.5 29.9 1.0 CB A:LYS183 4.5 21.7 1.0 C B:ILE162 4.5 25.0 1.0 CA A:SER126 4.6 28.3 1.0 CB B:SER166 4.6 24.4 1.0 CA A:LYS183 4.6 26.5 1.0 C A:ALA127 4.7 26.4 1.0 CB B:THR163 4.7 29.1 1.0 CB A:ALA184 4.7 20.6 1.0 CD A:PRO185 4.8 26.3 1.0 CG2 B:ILE162 4.8 20.7 1.0 CB A:ARG128 4.9 25.8 1.0 CA B:THR163 4.9 27.9 1.0

Molybdenum binding site 2 out of 5 in the Molybdate-Activated Form of Mode From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Molybdate-Activated Form of Mode From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo1263 b:36.6 occ:1.00 MO B:MOO1263 0.0 36.6 1.0 O1 B:MOO1263 1.8 30.4 1.0 O3 B:MOO1263 1.8 30.9 1.0 O4 B:MOO1263 1.8 29.9 1.0 O2 B:MOO1263 1.8 32.0 1.0 O B:SER126 2.8 42.5 1.0 CG B:LYS183 3.6 29.3 1.0 C B:SER126 3.7 40.8 1.0 NZ B:LYS183 3.7 16.7 1.0 N A:THR163 4.0 36.2 1.0 OG B:SER126 4.1 43.3 1.0 CG2 A:THR163 4.1 32.4 1.0 CG B:ARG128 4.1 33.3 1.0 OG A:SER166 4.1 33.9 1.0 OG1 A:THR163 4.2 32.3 1.0 CA B:ALA127 4.2 35.2 1.0 N B:ALA184 4.2 27.2 1.0 N B:ARG128 4.2 33.1 1.0 CA A:ILE162 4.3 36.2 1.0 N B:ALA127 4.3 39.1 1.0 CB B:SER126 4.3 41.0 1.0 CD B:LYS183 4.3 24.2 1.0 CD B:PRO185 4.5 31.1 1.0 CB A:ILE162 4.5 36.7 1.0 CG2 A:ILE162 4.6 36.1 1.0 CA B:LYS183 4.6 31.5 1.0 CB A:SER166 4.6 36.5 1.0 C B:ALA127 4.6 34.7 1.0 CE B:LYS183 4.6 20.7 1.0 CA B:SER126 4.6 39.9 1.0 CB A:THR163 4.6 33.1 1.0 C A:ILE162 4.7 35.9 1.0 CB B:ALA184 4.7 25.2 1.0 CB B:LYS183 4.7 29.4 1.0 CD B:ARG128 4.9 35.2 1.0 C B:LYS183 4.9 29.9 1.0 CA A:THR163 4.9 33.6 1.0 CB B:ARG128 4.9 30.4 1.0 O A:ALA161 5.0 29.3 1.0

Molybdenum binding site 3 out of 5 in the Molybdate-Activated Form of Mode From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Molybdate-Activated Form of Mode From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ C:Mo1262 b:19.9 occ:1.00 MO C:MOO1262 0.0 19.9 1.0 O1 C:MOO1262 1.8 26.6 1.0 O4 C:MOO1262 1.8 27.9 1.0 O3 C:MOO1262 1.8 22.0 1.0 O2 C:MOO1262 1.8 31.1 1.0 O C:SER126 3.0 32.7 1.0 CG C:LYS183 3.4 25.1 1.0 NZ C:LYS183 3.7 17.5 1.0 N D:THR163 3.8 27.7 1.0 C C:SER126 3.9 31.5 1.0 CG2 D:THR163 4.1 29.2 1.0 CE C:LYS183 4.1 21.7 1.0 CG C:ARG128 4.1 27.3 1.0 CA D:ILE162 4.1 27.6 1.0 OG1 D:THR163 4.1 26.0 1.0 N C:ALA184 4.2 25.3 1.0 OG D:SER166 4.3 28.6 1.0 OG C:SER126 4.3 28.7 1.0 N C:ARG128 4.3 25.6 1.0 CD C:LYS183 4.4 21.9 1.0 CB C:SER126 4.4 28.7 1.0 CB D:ILE162 4.4 26.3 1.0 C D:ILE162 4.5 26.9 1.0 CB C:LYS183 4.5 22.2 1.0 CA C:ALA127 4.5 26.9 1.0 CB D:THR163 4.6 27.8 1.0 N C:ALA127 4.6 29.7 1.0 CB C:ALA184 4.6 23.6 1.0 CD C:PRO185 4.6 25.3 1.0 CA C:LYS183 4.7 25.0 1.0 CB D:SER166 4.7 27.0 1.0 CA C:SER126 4.8 29.8 1.0 CA D:THR163 4.8 27.3 1.0 C C:ALA127 4.8 26.2 1.0 CG2 D:ILE162 4.9 22.8 1.0 CB C:ARG128 4.9 24.7 1.0 O D:ALA161 4.9 29.4 1.0 C C:LYS183 5.0 25.2 1.0

Molybdenum binding site 4 out of 5 in the Molybdate-Activated Form of Mode From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Molybdate-Activated Form of Mode From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ D:Mo1263 b:34.9 occ:1.00 MO D:MOO1263 0.0 34.9 1.0 O1 D:MOO1263 1.8 31.0 1.0 O3 D:MOO1263 1.8 29.4 1.0 O4 D:MOO1263 1.8 29.0 1.0 O2 D:MOO1263 1.8 28.7 1.0 O D:SER126 2.6 43.5 1.0 C D:SER126 3.5 42.2 1.0 CG D:LYS183 3.7 26.7 1.0 NZ D:LYS183 3.8 12.7 1.0 N C:THR163 3.9 37.1 1.0 OG D:SER126 4.0 42.2 1.0 OG C:SER166 4.0 33.8 1.0 OG1 C:THR163 4.1 33.8 1.0 CA D:ALA127 4.1 38.1 1.0 CG2 C:THR163 4.1 33.0 1.0 CG D:ARG128 4.2 30.0 1.0 CB D:SER126 4.2 42.3 1.0 N D:ALA127 4.2 40.2 1.0 N D:ARG128 4.2 36.3 1.0 CA C:ILE162 4.3 35.3 1.0 N D:ALA184 4.4 26.9 1.0 CD D:LYS183 4.5 24.2 1.0 CB C:ILE162 4.5 33.7 1.0 CA D:SER126 4.5 42.2 1.0 CB C:SER166 4.5 35.1 1.0 C D:ALA127 4.6 36.9 1.0 CB C:THR163 4.6 35.4 1.0 CD D:PRO185 4.6 28.7 1.0 C C:ILE162 4.6 36.0 1.0 CA D:LYS183 4.7 29.6 1.0 CE D:LYS183 4.7 17.1 1.0 CB D:LYS183 4.8 27.4 1.0 CB D:ALA184 4.8 27.4 1.0 CG2 C:ILE162 4.8 32.8 1.0 CA C:THR163 4.9 36.0 1.0 CB D:ARG128 5.0 32.3 1.0 CD D:ARG128 5.0 29.4 1.0

Molybdenum binding site 5 out of 5 in the Molybdate-Activated Form of Mode From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Molybdate-Activated Form of Mode From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ D:Mo1264 b:34.0 occ:1.00 MO D:MOO1264 0.0 34.0 1.0 O4 D:MOO1264 1.8 41.1 1.0 O3 D:MOO1264 1.8 37.5 1.0 O1 D:MOO1264 1.8 38.6 1.0 O2 D:MOO1264 1.8 42.9 1.0 CB D:ASP141 3.8 30.3 1.0 N C:ALA214 4.1 44.2 1.0 CE1 B:HIS140 4.2 39.0 1.0 CA D:CA1265 4.2 44.1 1.0 ND1 B:HIS140 4.2 37.2 1.0 CB D:VAL143 4.2 27.1 1.0 N D:VAL143 4.2 29.9 1.0 N D:GLN144 4.3 24.2 1.0 CA C:GLY213 4.4 42.6 1.0 CG D:ASP141 4.4 30.7 1.0 N C:GLN216 4.4 39.2 1.0 O D:GLN144 4.4 22.1 1.0 N C:GLU215 4.5 43.8 1.0 N D:ASP142 4.6 28.4 1.0 CG2 D:VAL143 4.7 24.4 1.0 C C:GLY213 4.7 43.0 1.0 OD2 D:ASP141 4.7 33.5 1.0 CA D:VAL143 4.7 27.7 1.0 CB C:GLN216 4.8 35.1 1.0 CB C:ALA214 4.8 46.1 1.0 O C:GLN216 4.8 34.0 1.0 CA D:ASP141 4.9 29.1 1.0 CA C:ALA214 4.9 44.9 1.0

A.W.Schuttelkopf, D.H.Boxer, W.N.Hunter. Crystal Structure of Activated Mode Reveals Conformational Changes Involving Both Oxyanion and Dna-Binding Domains J.Mol.Biol. V. 326 761 2003.
ISSN: ISSN 0022-2836
PubMed: 12581638
DOI: 10.1016/S0022-2836(02)01358-X