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Molybdenum in PDB 1ogp: The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals

Enzymatic activity of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals

All present enzymatic activity of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals:
1.8.3.1;

Protein crystallography data

The structure of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals, PDB code: 1ogp was solved by N.Schrader, K.Fischer, K.Theis, R.R.Mendel, G.Schwarz, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 182.57 / 2.60
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 222.918, 351.271, 158.282, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 26.6

Other elements in 1ogp:

The structure of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals also contains other interesting chemical elements:

Caesium (Cs) 12 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals (pdb code 1ogp). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 6 binding sites of Molybdenum where determined in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals, PDB code: 1ogp:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6;

Molybdenum binding site 1 out of 6 in 1ogp

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Molybdenum binding site 1 out of 6 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1394

b:40.7
occ:1.00
 MOM1 A:MTQ1394 0.0 40.7 1.0
OM1 A:MTQ1394 1.7 40.4 1.0
OM2 A:MTQ1394 1.7 35.1 1.0
S2' A:MTQ1394 2.3 39.9 1.0
SG A:CYS98 2.3 37.8 1.0
S1' A:MTQ1394 2.4 33.4 1.0
C1' A:MTQ1394 3.2 42.7 1.0
C2' A:MTQ1394 3.4 37.6 1.0
OH A:TYR241 3.5 55.4 1.0
CB A:CYS98 3.6 37.1 1.0
CA A:CYS98 3.8 38.4 1.0
CE1 A:TYR241 3.8 46.7 1.0
N A:ALA216 3.8 41.9 1.0
N A:ALA99 3.9 40.0 1.0
CZ A:TYR241 3.9 52.4 1.0
CB A:ALA216 4.0 43.0 1.0
CA A:ALA216 4.2 41.8 1.0
NE A:ARG51 4.2 47.9 1.0
C A:CYS98 4.3 40.8 1.0
CD A:ARG51 4.3 47.6 1.0
CG A:ARG51 4.5 48.9 1.0
C A:GLY215 4.5 42.8 1.0
C6 A:MTQ1394 4.6 40.2 1.0
O A:HOH2031 4.7 60.3 1.0
N A:GLY100 4.7 42.9 1.0
CA A:GLY215 4.8 40.1 1.0
CD1 A:TYR241 4.9 43.0 1.0
CA A:ALA99 4.9 41.7 1.0
CB A:ALA99 5.0 45.1 1.0
C3' A:MTQ1394 5.0 38.1 1.0

Molybdenum binding site 2 out of 6 in 1ogp

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Molybdenum binding site 2 out of 6 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo1394

b:45.4
occ:1.00
 MOM1 B:MTQ1394 0.0 45.4 1.0
OM2 B:MTQ1394 1.7 41.2 1.0
OM1 B:MTQ1394 1.8 40.0 1.0
S2' B:MTQ1394 2.2 40.4 1.0
S1' B:MTQ1394 2.4 36.0 1.0
SG B:CYS98 2.6 44.4 1.0
C1' B:MTQ1394 3.2 41.5 1.0
C2' B:MTQ1394 3.3 36.0 1.0
CB B:CYS98 3.6 38.6 1.0
N B:ALA216 3.8 41.9 1.0
CA B:CYS98 3.8 38.5 1.0
OH B:TYR241 3.9 54.3 1.0
N B:ALA99 3.9 39.9 1.0
NE B:ARG51 4.1 44.8 1.0
CB B:ALA216 4.1 41.5 1.0
CD B:ARG51 4.1 49.1 1.0
CA B:ALA216 4.1 41.8 1.0
CE1 B:TYR241 4.2 47.6 1.0
CZ B:TYR241 4.2 52.4 1.0
CG B:ARG51 4.3 48.4 1.0
C B:CYS98 4.3 40.6 1.0
C B:GLY215 4.5 42.8 1.0
C6 B:MTQ1394 4.6 39.0 1.0
CA B:GLY215 4.8 40.2 1.0
C3' B:MTQ1394 4.8 37.3 1.0
N B:GLY100 4.9 43.3 1.0
CB B:ALA99 4.9 45.2 1.0
CB B:ARG51 4.9 46.6 1.0
CD1 B:TYR241 5.0 43.3 1.0

Molybdenum binding site 3 out of 6 in 1ogp

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Molybdenum binding site 3 out of 6 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo1394

b:51.3
occ:1.00
 MOM1 C:MTQ1394 0.0 51.3 1.0
OM2 C:MTQ1394 1.7 40.3 1.0
OM1 C:MTQ1394 1.8 41.4 1.0
S2' C:MTQ1394 2.2 46.3 1.0
S1' C:MTQ1394 2.5 44.4 1.0
SG C:CYS98 2.6 42.0 1.0
C1' C:MTQ1394 3.3 43.8 1.0
C2' C:MTQ1394 3.4 39.0 1.0
OH C:TYR241 3.4 56.2 1.0
CB C:CYS98 3.6 37.3 1.0
CA C:CYS98 3.8 38.5 1.0
N C:ALA216 3.8 42.0 1.0
N C:ALA99 3.9 40.0 1.0
CE1 C:TYR241 3.9 51.4 1.0
CZ C:TYR241 4.0 52.8 1.0
NE C:ARG51 4.1 47.8 1.0
CB C:ALA216 4.2 43.2 1.0
CD C:ARG51 4.2 51.4 1.0
CA C:ALA216 4.2 41.8 1.0
C C:CYS98 4.3 40.8 1.0
CG C:ARG51 4.3 49.1 1.0
C C:GLY215 4.5 42.9 1.0
C6 C:MTQ1394 4.7 39.1 1.0
N C:GLY100 4.7 42.9 1.0
CA C:GLY215 4.8 40.2 1.0
CB C:ARG51 4.9 45.5 1.0
CA C:ALA99 4.9 41.6 1.0
CB C:ALA99 5.0 45.7 1.0
C3' C:MTQ1394 5.0 37.8 1.0

Molybdenum binding site 4 out of 6 in 1ogp

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Molybdenum binding site 4 out of 6 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mo1394

b:51.1
occ:1.00
 MOM1 D:MTQ1394 0.0 51.1 1.0
OM1 D:MTQ1394 1.7 43.1 1.0
OM2 D:MTQ1394 1.7 39.3 1.0
SG D:CYS98 2.0 38.8 1.0
S1' D:MTQ1394 2.3 42.2 1.0
S2' D:MTQ1394 2.3 47.2 1.0
C1' D:MTQ1394 3.2 43.3 1.0
OH D:TYR241 3.3 57.3 1.0
C2' D:MTQ1394 3.3 37.1 1.0
CB D:CYS98 3.5 43.8 1.0
N D:ALA216 3.7 41.9 1.0
CA D:CYS98 3.7 38.8 1.0
N D:ALA99 3.8 40.1 1.0
CE1 D:TYR241 3.8 48.2 1.0
CZ D:TYR241 3.8 52.4 1.0
CA D:ALA216 4.1 42.1 1.0
NE D:ARG51 4.2 48.4 1.0
CB D:ALA216 4.2 42.0 1.0
C D:CYS98 4.2 40.7 1.0
CD D:ARG51 4.3 45.9 1.0
CG D:ARG51 4.3 48.7 1.0
C D:GLY215 4.4 42.9 1.0
C6 D:MTQ1394 4.6 39.0 1.0
CA D:GLY215 4.7 40.0 1.0
CB D:ALA99 4.8 44.1 1.0
N D:GLY100 4.8 42.6 1.0
CD1 D:TYR241 4.8 46.4 1.0
CE2 D:TYR241 4.9 43.2 1.0
CA D:ALA99 4.9 41.6 1.0
C3' D:MTQ1394 4.9 41.6 1.0

Molybdenum binding site 5 out of 6 in 1ogp

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Molybdenum binding site 5 out of 6 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mo1394

b:38.8
occ:1.00
 MOM1 E:MTQ1394 0.0 38.8 1.0
OM2 E:MTQ1394 1.7 33.0 1.0
OM1 E:MTQ1394 1.7 37.0 1.0
S2' E:MTQ1394 2.2 37.8 1.0
S1' E:MTQ1394 2.3 29.8 1.0
SG E:CYS98 2.4 38.5 1.0
C1' E:MTQ1394 3.2 41.5 1.0
C2' E:MTQ1394 3.3 36.7 1.0
CB E:CYS98 3.5 36.6 1.0
OH E:TYR241 3.7 54.7 1.0
CA E:CYS98 3.8 38.4 1.0
N E:ALA216 3.8 42.0 1.0
N E:ALA99 3.9 39.6 1.0
CE1 E:TYR241 4.0 46.0 1.0
CB E:ALA216 4.1 40.0 1.0
CZ E:TYR241 4.1 50.8 1.0
CA E:ALA216 4.2 41.8 1.0
NE E:ARG51 4.2 47.4 1.0
CD E:ARG51 4.3 45.3 1.0
CG E:ARG51 4.3 47.4 1.0
C E:CYS98 4.3 40.6 1.0
C E:GLY215 4.5 42.5 1.0
C6 E:MTQ1394 4.7 36.3 1.0
N E:GLY100 4.8 42.8 1.0
CA E:GLY215 4.8 40.0 1.0
C3' E:MTQ1394 4.9 37.8 1.0
CB E:ALA99 4.9 44.3 1.0
CA E:ALA99 4.9 41.5 1.0

Molybdenum binding site 6 out of 6 in 1ogp

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Molybdenum binding site 6 out of 6 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mo1394

b:40.6
occ:1.00
 MOM1 F:MTQ1394 0.0 40.6 1.0
OM2 F:MTQ1394 1.7 38.1 1.0
OM1 F:MTQ1394 1.8 40.2 1.0
S2' F:MTQ1394 2.2 32.2 1.0
SG F:CYS98 2.3 38.0 1.0
S1' F:MTQ1394 2.4 33.2 1.0
C1' F:MTQ1394 3.2 40.2 1.0
C2' F:MTQ1394 3.3 35.2 1.0
CB F:CYS98 3.5 37.5 1.0
OH F:TYR241 3.7 55.3 1.0
CA F:CYS98 3.8 38.5 1.0
N F:ALA216 3.9 42.0 1.0
CE1 F:TYR241 3.9 48.2 1.0
N F:ALA99 3.9 39.8 1.0
CZ F:TYR241 4.1 53.8 1.0
NE F:ARG51 4.2 45.9 1.0
CB F:ALA216 4.2 40.0 1.0
CG F:ARG51 4.2 47.8 1.0
CA F:ALA216 4.2 41.6 1.0
CD F:ARG51 4.2 48.4 1.0
C F:CYS98 4.3 40.5 1.0
C F:GLY215 4.6 42.7 1.0
C6 F:MTQ1394 4.6 38.9 1.0
O F:HOH2111 4.6 50.6 1.0
N F:GLY100 4.7 42.8 1.0
CA F:GLY215 4.8 39.8 1.0
C3' F:MTQ1394 4.9 38.3 1.0
CB F:ARG51 4.9 46.9 1.0
CB F:ALA99 5.0 44.0 1.0
CA F:ALA99 5.0 41.4 1.0
CD1 F:TYR241 5.0 41.6 1.0

Reference:

N.Schrader, K.Fischer, K.Theis, R.R.Mendel, G.Schwarz, C.Kisker. The Crystal Structure of Plant Sulfite Oxidase Provides Insights Into Sulfite Oxidation in Plants and Animals Structure V. 11 1251 2003.
ISSN: ISSN 0969-2126
PubMed: 14527393
DOI: 10.1016/J.STR.2003.09.001
Page generated: Tue Dec 15 05:16:15 2020

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