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Molybdenum in PDB 1p0z: Sensor Kinase Cita Binding Domain

Enzymatic activity of Sensor Kinase Cita Binding Domain

All present enzymatic activity of Sensor Kinase Cita Binding Domain:
2.7.13.3;

Protein crystallography data

The structure of Sensor Kinase Cita Binding Domain, PDB code: 1p0z was solved by S.Reinelt, E.Hofmann, T.Gerharz, M.Bott, D.R.Madden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.03 / 1.60
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 61.613, 84.333, 97.710, 112.83, 107.36, 93.74
R / Rfree (%) 16.8 / 19

Other elements in 1p0z:

The structure of Sensor Kinase Cita Binding Domain also contains other interesting chemical elements:

Sodium (Na) 10 atoms

Molybdenum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80;

Binding sites:

The binding sites of Molybdenum atom in the Sensor Kinase Cita Binding Domain (pdb code 1p0z). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 80 binding sites of Molybdenum where determined in the Sensor Kinase Cita Binding Domain, PDB code: 1p0z:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 80 in 1p0z

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Molybdenum binding site 1 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1630

b:24.3
occ:1.00
MO1 A:MO71630 0.0 24.3 1.0
O1 A:MO71630 1.6 22.9 1.0
O4 A:MO71630 1.8 26.2 1.0
O17 A:MO71630 1.9 25.0 1.0
O3 A:MO71630 1.9 23.9 1.0
O2 A:MO71630 2.1 25.4 1.0
O5 A:MO71630 2.2 21.9 1.0
MO6 A:MO71630 3.3 26.7 1.0
MO2 A:MO71630 3.3 28.7 1.0
MO7 A:MO71630 3.3 23.3 1.0
MO5 A:MO71630 3.3 23.1 1.0
MO3 A:MO71630 3.4 24.6 1.0
O19 A:MO71630 3.4 23.0 1.0
MO4 A:MO71630 3.4 21.5 1.0
O7 A:MO71630 3.4 23.1 1.0
O18 A:MO71630 3.4 27.0 1.0
O12 A:MO71630 3.5 21.6 1.0
O20 A:MO71630 3.6 25.0 1.0
O9 A:MO71630 3.7 21.9 1.0
O A:HOH1803 3.9 44.0 1.0
O16 A:MO71630 4.3 23.6 1.0
O8 A:MO71630 4.3 29.2 1.0
CD2 A:HIS135 4.4 26.1 1.0
O22 A:MO71630 4.4 26.5 1.0
O23 A:MO71630 4.5 25.3 1.0
O13 A:MO71630 4.5 20.0 1.0
O11 A:MO71630 4.5 24.2 1.0
O21 A:MO71630 4.6 26.2 1.0
O6 A:MO71630 4.7 25.9 1.0
O10 A:MO71630 4.7 23.4 1.0
O24 A:MO71630 4.8 22.2 1.0
CB A:HIS135 4.8 29.3 1.0
O14 A:MO71630 4.8 19.8 1.0
O15 A:MO71630 4.9 22.7 1.0
CG A:HIS135 4.9 26.6 1.0

Molybdenum binding site 2 out of 80 in 1p0z

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Molybdenum binding site 2 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1630

b:28.7
occ:1.00
MO2 A:MO71630 0.0 28.7 1.0
O6 A:MO71630 1.6 25.9 1.0
O8 A:MO71630 1.8 29.2 1.0
O7 A:MO71630 1.9 23.1 1.0
O18 A:MO71630 1.9 27.0 1.0
O2 A:MO71630 2.2 25.4 1.0
O4 A:MO71630 2.4 26.2 1.0
MO6 A:MO71630 3.1 26.7 1.0
MO3 A:MO71630 3.2 24.6 1.0
MO1 A:MO71630 3.3 24.3 1.0
O21 A:MO71630 3.5 26.2 1.0
O10 A:MO71630 3.6 23.4 1.0
O A:HOH1803 3.6 44.0 1.0
O17 A:MO71630 3.8 25.0 1.0
O3 A:MO71630 3.8 23.9 1.0
N A:HIS135 4.1 31.6 1.0
O A:HOH1744 4.1 52.9 1.0
O22 A:MO71630 4.4 26.5 1.0
O11 A:MO71630 4.4 24.2 1.0
ND1 A:HIS134 4.4 38.7 1.0
CB A:HIS134 4.5 35.3 1.0
O A:HOH1782 4.6 54.1 1.0
O A:HOH1795 4.6 45.5 1.0
O20 A:MO71630 4.7 25.0 1.0
C A:HIS135 4.7 32.0 1.0
O9 A:MO71630 4.7 21.9 1.0
O1 A:MO71630 4.7 22.9 1.0
CA A:HIS135 4.8 30.7 1.0
CB A:HIS135 4.9 29.3 1.0
CA A:HIS134 4.9 32.8 1.0
CG A:HIS134 4.9 37.4 1.0
O5 A:MO71630 5.0 21.9 1.0

Molybdenum binding site 3 out of 80 in 1p0z

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Molybdenum binding site 3 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1630

b:24.6
occ:1.00
MO3 A:MO71630 0.0 24.6 1.0
O10 A:MO71630 1.7 23.4 1.0
O11 A:MO71630 1.7 24.2 1.0
O9 A:MO71630 2.0 21.9 1.0
O7 A:MO71630 2.0 23.1 1.0
O2 A:MO71630 2.1 25.4 1.0
O3 A:MO71630 2.2 23.9 1.0
MO2 A:MO71630 3.2 28.7 1.0
MO4 A:MO71630 3.3 21.5 1.0
MO1 A:MO71630 3.4 24.3 1.0
O13 A:MO71630 3.6 20.0 1.0
O6 A:MO71630 3.6 25.9 1.0
ND1 A:HIS9 3.8 20.9 1.0
O4 A:MO71630 3.8 26.2 1.0
O5 A:MO71630 3.8 21.9 1.0
ND1 A:HIS134 4.0 38.7 1.0
CD2 A:HIS135 4.0 26.1 1.0
MO6 A:MO71630 4.2 26.7 1.0
CE1 A:HIS9 4.2 22.1 1.0
O21 A:MO71630 4.3 26.2 1.0
O A:HOH1726 4.3 33.8 1.0
O18 A:MO71630 4.4 27.0 1.0
O20 A:MO71630 4.5 25.0 1.0
CA A:HIS134 4.5 32.8 1.0
N A:HIS135 4.5 31.6 1.0
O17 A:MO71630 4.5 25.0 1.0
O8 A:MO71630 4.6 29.2 1.0
O14 A:MO71630 4.7 19.8 1.0
O1 A:MO71630 4.7 22.9 1.0
O12 A:MO71630 4.7 21.6 1.0
CD1 A:LEU132 4.8 30.1 1.0
NE2 A:HIS135 4.8 25.7 1.0
CE1 A:HIS134 4.8 39.0 1.0
CG A:HIS134 4.9 37.4 1.0
CB A:HIS134 4.9 35.3 1.0
CG A:HIS135 4.9 26.6 1.0
O A:GLU133 5.0 30.1 1.0
CG A:HIS9 5.0 21.1 1.0

Molybdenum binding site 4 out of 80 in 1p0z

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Molybdenum binding site 4 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1630

b:21.5
occ:1.00
MO4 A:MO71630 0.0 21.5 1.0
O13 A:MO71630 1.8 20.0 1.0
O14 A:MO71630 1.8 19.8 1.0
O12 A:MO71630 1.9 21.6 1.0
O9 A:MO71630 2.0 21.9 1.0
O5 A:MO71630 2.1 21.9 1.0
O3 A:MO71630 2.3 23.9 1.0
MO5 A:MO71630 3.1 23.1 1.0
MO3 A:MO71630 3.3 24.6 1.0
MO1 A:MO71630 3.4 24.3 1.0
O15 A:MO71630 3.6 22.7 1.0
O11 A:MO71630 3.7 24.2 1.0
O1 A:MO71630 3.7 22.9 1.0
O2 A:MO71630 3.8 25.4 1.0
CG2 A:VAL12 4.1 18.6 1.0
CA A:HIS9 4.1 18.9 1.0
O A:HOH1705 4.2 39.6 1.0
MO7 A:MO71630 4.2 23.3 1.0
ND1 A:HIS9 4.3 20.9 1.0
O19 A:MO71630 4.4 23.0 1.0
CB A:HIS9 4.4 18.5 1.0
CD2 A:HIS135 4.4 26.1 1.0
O24 A:MO71630 4.4 22.2 1.0
O20 A:MO71630 4.4 25.0 1.0
O16 A:MO71630 4.5 23.6 1.0
C A:HIS9 4.5 18.9 1.0
CB A:GLN11 4.5 18.4 1.0
O17 A:MO71630 4.6 25.0 1.0
N A:VAL12 4.6 18.5 1.0
N A:GLN11 4.6 17.3 1.0
O10 A:MO71630 4.6 23.4 1.0
O A:HOH1726 4.7 33.8 1.0
O7 A:MO71630 4.8 23.1 1.0
NE2 A:HIS135 4.8 25.7 1.0
N A:TYR10 4.8 18.8 1.0
O4 A:MO71630 4.9 26.2 1.0
CG A:HIS9 4.9 21.1 1.0
O A:HIS9 4.9 18.7 1.0

Molybdenum binding site 5 out of 80 in 1p0z

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Molybdenum binding site 5 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1630

b:23.1
occ:1.00
MO5 A:MO71630 0.0 23.1 1.0
O16 A:MO71630 1.7 23.6 1.0
O15 A:MO71630 1.7 22.7 1.0
O19 A:MO71630 1.9 23.0 1.0
O12 A:MO71630 1.9 21.6 1.0
O5 A:MO71630 2.1 21.9 1.0
O1 A:MO71630 2.5 22.9 1.0
MO4 A:MO71630 3.1 21.5 1.0
MO7 A:MO71630 3.1 23.3 1.0
MO1 A:MO71630 3.3 24.3 1.0
O24 A:MO71630 3.5 22.2 1.0
O14 A:MO71630 3.6 19.8 1.0
O3 A:MO71630 3.8 23.9 1.0
O17 A:MO71630 3.8 25.0 1.0
NH1 A:ARG7 3.8 36.6 1.0
CG A:GLN11 4.1 21.1 1.0
NE2 A:GLN11 4.3 23.9 1.0
N A:GLN11 4.3 17.3 1.0
CB A:GLN11 4.4 18.4 1.0
O13 A:MO71630 4.4 20.0 1.0
O23 A:MO71630 4.4 25.3 1.0
O20 A:MO71630 4.6 25.0 1.0
O9 A:MO71630 4.6 21.9 1.0
CD A:GLN11 4.7 24.6 1.0
N A:TYR10 4.7 18.8 1.0
O2 A:MO71630 4.9 25.4 1.0
O4 A:MO71630 5.0 26.2 1.0
CB A:TYR10 5.0 19.8 1.0

Molybdenum binding site 6 out of 80 in 1p0z

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Molybdenum binding site 6 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1630

b:26.7
occ:1.00
MO6 A:MO71630 0.0 26.7 1.0
O21 A:MO71630 1.6 26.2 1.0
O22 A:MO71630 1.8 26.5 1.0
O20 A:MO71630 2.0 25.0 1.0
O18 A:MO71630 2.0 27.0 1.0
O2 A:MO71630 2.1 25.4 1.0
O17 A:MO71630 2.2 25.0 1.0
MO2 A:MO71630 3.1 28.7 1.0
MO7 A:MO71630 3.2 23.3 1.0
MO1 A:MO71630 3.3 24.3 1.0
O6 A:MO71630 3.6 25.9 1.0
O23 A:MO71630 3.6 25.3 1.0
O5 A:MO71630 3.8 21.9 1.0
O4 A:MO71630 3.8 26.2 1.0
O A:HOH1744 4.2 52.9 1.0
MO3 A:MO71630 4.2 24.6 1.0
O A:HOH1803 4.2 44.0 1.0
O10 A:MO71630 4.3 23.4 1.0
O7 A:MO71630 4.3 23.1 1.0
O9 A:MO71630 4.4 21.9 1.0
O3 A:MO71630 4.4 23.9 1.0
CE1 A:HIS9 4.5 22.1 1.0
ND1 A:HIS9 4.5 20.9 1.0
O8 A:MO71630 4.6 29.2 1.0
O A:HOH1782 4.6 54.1 1.0
O24 A:MO71630 4.6 22.2 1.0
O1 A:MO71630 4.6 22.9 1.0
O19 A:MO71630 4.6 23.0 1.0

Molybdenum binding site 7 out of 80 in 1p0z

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Molybdenum binding site 7 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1630

b:23.3
occ:1.00
MO7 A:MO71630 0.0 23.3 1.0
O24 A:MO71630 1.7 22.2 1.0
O23 A:MO71630 1.8 25.3 1.0
O19 A:MO71630 1.9 23.0 1.0
O20 A:MO71630 1.9 25.0 1.0
O5 A:MO71630 2.2 21.9 1.0
O17 A:MO71630 2.3 25.0 1.0
MO5 A:MO71630 3.1 23.1 1.0
MO6 A:MO71630 3.2 26.7 1.0
MO1 A:MO71630 3.3 24.3 1.0
O22 A:MO71630 3.6 26.5 1.0
O15 A:MO71630 3.7 22.7 1.0
O1 A:MO71630 3.7 22.9 1.0
O2 A:MO71630 3.8 25.4 1.0
MO4 A:MO71630 4.2 21.5 1.0
CD A:ARG7 4.2 32.2 1.0
CB A:ARG7 4.3 28.4 1.0
CA A:HIS9 4.3 18.9 1.0
N A:HIS9 4.3 19.3 1.0
O12 A:MO71630 4.4 21.6 1.0
O14 A:MO71630 4.5 19.8 1.0
O9 A:MO71630 4.5 21.9 1.0
N A:TYR10 4.5 18.8 1.0
O21 A:MO71630 4.5 26.2 1.0
O16 A:MO71630 4.5 23.6 1.0
O3 A:MO71630 4.5 23.9 1.0
O18 A:MO71630 4.8 27.0 1.0
NH1 A:ARG7 4.8 36.6 1.0
O4 A:MO71630 4.9 26.2 1.0
C A:HIS9 4.9 18.9 1.0
CG A:ARG7 4.9 29.5 1.0

Molybdenum binding site 8 out of 80 in 1p0z

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Molybdenum binding site 8 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1631

b:19.3
occ:1.00
MO A:OMO1631 0.0 19.3 1.0
OR1 A:OMO1631 1.7 18.1 1.0
OM2 A:OMO1631 1.7 18.6 1.0
OM1 A:OMO1631 1.9 17.8 1.0
OHB A:FLC1632 2.1 20.2 1.0
OB2 A:FLC1632 2.2 20.8 1.0
OG1 A:FLC1632 2.2 17.5 1.0
CBC A:FLC1632 3.0 19.3 1.0
CB A:FLC1632 3.0 18.1 1.0
CGC A:FLC1632 3.3 19.3 1.0
CG A:FLC1632 3.6 16.4 1.0
O A:HOH1640 3.8 22.9 1.0
O A:HOH1635 3.9 23.2 1.0
O A:HOH1639 4.0 21.9 1.0
NH1 A:ARG107 4.0 16.6 1.0
NH2 A:ARG98 4.0 19.9 1.0
NH2 A:ARG107 4.1 16.6 1.0
N A:GLY81 4.1 21.0 1.0
CA A:GLY81 4.1 20.4 1.0
OB1 A:FLC1632 4.2 18.7 1.0
NE A:ARG98 4.2 19.0 1.0
NH2 A:ARG66 4.3 19.5 1.0
OG2 A:FLC1632 4.4 18.6 1.0
CA A:FLC1632 4.5 16.4 1.0
CZ A:ARG107 4.5 15.6 1.0
CZ A:ARG98 4.6 20.5 1.0
OD1 A:ASP83 4.7 19.5 1.0
CAC A:FLC1632 4.8 17.3 1.0
CA A:GLY100 4.8 19.4 1.0
OA1 A:FLC1632 4.9 19.5 1.0
N A:GLU80 4.9 22.3 1.0
CB A:MET79 4.9 21.9 1.0
CA A:MET79 5.0 23.7 1.0

Molybdenum binding site 9 out of 80 in 1p0z

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Molybdenum binding site 9 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo1634

b:23.1
occ:1.00
MO1 B:MO71634 0.0 23.1 1.0
O1 B:MO71634 1.7 20.1 1.0
O4 B:MO71634 1.8 24.2 1.0
O3 B:MO71634 1.9 21.5 1.0
O17 B:MO71634 1.9 21.0 1.0
O2 B:MO71634 2.1 25.3 1.0
O5 B:MO71634 2.2 21.7 1.0
MO6 B:MO71634 3.3 25.6 1.0
MO2 B:MO71634 3.3 28.1 1.0
MO3 B:MO71634 3.3 24.6 1.0
MO7 B:MO71634 3.3 21.6 1.0
MO5 B:MO71634 3.3 21.0 1.0
O18 B:MO71634 3.4 25.4 1.0
MO4 B:MO71634 3.4 20.7 1.0
O19 B:MO71634 3.4 20.9 1.0
O12 B:MO71634 3.4 19.9 1.0
O7 B:MO71634 3.4 23.3 1.0
O20 B:MO71634 3.6 21.8 1.0
O9 B:MO71634 3.7 20.8 1.0
O22 B:MO71634 4.3 24.8 1.0
O8 B:MO71634 4.3 27.2 1.0
O16 B:MO71634 4.4 21.3 1.0
O11 B:MO71634 4.4 21.3 1.0
CD2 B:HIS135 4.4 26.1 1.0
O B:HOH1793 4.5 50.0 1.0
O13 B:MO71634 4.5 19.1 1.0
O23 B:MO71634 4.5 22.6 1.0
O21 B:MO71634 4.6 27.8 1.0
O10 B:MO71634 4.7 25.6 1.0
O6 B:MO71634 4.8 28.0 1.0
CB B:HIS135 4.8 30.0 1.0
O24 B:MO71634 4.8 19.1 1.0
O14 B:MO71634 4.9 18.7 1.0
O15 B:MO71634 4.9 21.1 1.0
CG B:HIS135 4.9 28.0 1.0

Molybdenum binding site 10 out of 80 in 1p0z

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Molybdenum binding site 10 out of 80 in the Sensor Kinase Cita Binding Domain


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of Sensor Kinase Cita Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo1634

b:28.1
occ:1.00
MO2 B:MO71634 0.0 28.1 1.0
O6 B:MO71634 1.7 28.0 1.0
O8 B:MO71634 1.8 27.2 1.0
O7 B:MO71634 1.8 23.3 1.0
O18 B:MO71634 1.9 25.4 1.0
O2 B:MO71634 2.2 25.3 1.0
O4 B:MO71634 2.4 24.2 1.0
MO6 B:MO71634 3.1 25.6 1.0
MO3 B:MO71634 3.2 24.6 1.0
MO1 B:MO71634 3.3 23.1 1.0
O21 B:MO71634 3.5 27.8 1.0
O10 B:MO71634 3.6 25.6 1.0
O3 B:MO71634 3.7 21.5 1.0
O17 B:MO71634 3.7 21.0 1.0
O B:HOH1777 4.0 53.5 1.0
N B:HIS135 4.1 32.3 1.0
O22 B:MO71634 4.3 24.8 1.0
O11 B:MO71634 4.3 21.3 1.0
O B:HOH1714 4.5 48.8 1.0
ND1 B:HIS134 4.5 38.4 1.0
CB B:HIS134 4.6 36.2 1.0
O20 B:MO71634 4.7 21.8 1.0
C B:HIS135 4.8 33.1 1.0
O9 B:MO71634 4.8 20.8 1.0
CA B:HIS135 4.8 32.1 1.0
O1 B:MO71634 4.8 20.1 1.0
CB B:HIS135 4.8 30.0 1.0
CA B:HIS134 4.9 33.2 1.0
O B:HOH1793 4.9 50.0 1.0
CG B:HIS134 5.0 38.4 1.0
O5 B:MO71634 5.0 21.7 1.0

Reference:

S.Reinelt, E.Hofmann, T.Gerharz, M.Bott, D.R.Madden. The Structure of the Periplasmic Ligand-Binding Domain of the Sensor Kinase Cita Reveals the First Extracellular Pas Domain. J.Biol.Chem. V. 278 39189 2003.
ISSN: ISSN 0021-9258
PubMed: 12867417
DOI: 10.1074/JBC.M305864200
Page generated: Tue Dec 15 05:16:18 2020

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