Atomistry » Molybdenum » PDB 1n62-2c9x » 1r27
Atomistry »
  Molybdenum »
    PDB 1n62-2c9x »
      1r27 »

Molybdenum in PDB 1r27: Crystal Structure of Nargh Complex

Enzymatic activity of Crystal Structure of Nargh Complex

All present enzymatic activity of Crystal Structure of Nargh Complex:
1.7.99.4;

Protein crystallography data

The structure of Crystal Structure of Nargh Complex, PDB code: 1r27 was solved by M.Jormakka, D.Richardson, B.Byrne, S.Iwata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.86 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 127.401, 298.300, 296.853, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 23

Other elements in 1r27:

The structure of Crystal Structure of Nargh Complex also contains other interesting chemical elements:

Iron (Fe) 38 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystal Structure of Nargh Complex (pdb code 1r27). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Crystal Structure of Nargh Complex, PDB code: 1r27:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 1r27

Go back to Molybdenum Binding Sites List in 1r27
Molybdenum binding site 1 out of 2 in the Crystal Structure of Nargh Complex


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of Nargh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo5803

b:49.9
occ:1.00
O A:HOH6570 1.9 17.6 1.0
OD2 A:ASP222 2.0 36.5 1.0
S13 A:MGD5801 2.4 30.1 1.0
S13 A:MGD5802 2.4 33.3 1.0
S12 A:MGD5801 2.4 37.5 1.0
S12 A:MGD5802 2.6 30.0 1.0
CG A:ASP222 2.8 35.4 1.0
OD1 A:ASP222 3.2 33.9 1.0
C13 A:MGD5802 3.3 28.2 1.0
C13 A:MGD5801 3.4 32.3 1.0
C12 A:MGD5802 3.4 27.8 1.0
C12 A:MGD5801 3.4 31.6 1.0
N A:GLY579 3.7 26.8 1.0
CA A:GLY579 3.8 25.6 1.0
ND2 A:ASN52 3.9 27.5 1.0
CE1 A:HIS1098 4.0 26.7 1.0
CB A:ASP222 4.2 29.8 1.0
CE1 A:HIS1092 4.3 24.5 1.0
C A:VAL578 4.4 26.5 1.0
NE2 A:HIS1098 4.5 25.9 1.0
CB A:VAL578 4.6 27.1 1.0
C14 A:MGD5801 4.8 29.1 1.0
CB A:TYR220 4.8 32.3 1.0
C14 A:MGD5802 4.9 27.6 1.0
CA A:VAL578 4.9 26.0 1.0
C11 A:MGD5802 4.9 26.9 1.0
C11 A:MGD5801 5.0 30.5 1.0
CG A:ASN52 5.0 26.8 1.0

Molybdenum binding site 2 out of 2 in 1r27

Go back to Molybdenum Binding Sites List in 1r27
Molybdenum binding site 2 out of 2 in the Crystal Structure of Nargh Complex


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of Nargh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo7803

b:48.5
occ:1.00
O C:HOH8538 1.9 18.2 1.0
OD2 C:ASP222 2.0 40.6 1.0
S13 C:MGD7801 2.4 34.0 1.0
S13 C:MGD7802 2.4 30.5 1.0
S12 C:MGD7801 2.5 37.1 1.0
S12 C:MGD7802 2.5 33.4 1.0
CG C:ASP222 2.9 36.5 1.0
OD1 C:ASP222 3.2 34.8 1.0
C13 C:MGD7801 3.4 32.5 1.0
C13 C:MGD7802 3.4 27.6 1.0
C12 C:MGD7801 3.4 32.2 1.0
C12 C:MGD7802 3.5 28.0 1.0
N C:GLY579 3.8 31.3 1.0
ND2 C:ASN52 3.8 31.7 1.0
CA C:GLY579 3.9 32.1 1.0
CE1 C:HIS1098 4.0 28.3 1.0
CE1 C:HIS1092 4.2 21.5 1.0
CB C:ASP222 4.3 32.8 1.0
NE2 C:HIS1098 4.4 27.9 1.0
C C:VAL578 4.4 30.8 1.0
CB C:VAL578 4.6 30.3 1.0
CB C:TYR220 4.7 35.6 1.0
C14 C:MGD7801 4.8 29.2 1.0
CD2 C:TYR220 4.8 39.1 1.0
C14 C:MGD7802 4.9 27.4 1.0
CG C:ASN52 5.0 31.6 1.0
C11 C:MGD7801 5.0 32.3 1.0
C11 C:MGD7802 5.0 28.8 1.0

Reference:

M.Jormakka, D.Richardson, B.Byrne, S.Iwata. Architecture of Nargh Reveals A Structural Classification of Mo-Bismgd Enzymes Structure V. 12 95 2004.
ISSN: ISSN 0969-2126
PubMed: 14725769
DOI: 10.1016/J.STR.2003.11.020
Page generated: Tue Dec 15 05:16:30 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy