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Molybdenum in PDB 1sox: Sulfite Oxidase From Chicken Liver

Enzymatic activity of Sulfite Oxidase From Chicken Liver

All present enzymatic activity of Sulfite Oxidase From Chicken Liver:
1.8.3.1;

Protein crystallography data

The structure of Sulfite Oxidase From Chicken Liver, PDB code: 1sox was solved by C.Kisker, H.Schindelin, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.117, 197.690, 56.009, 90.00, 94.23, 90.00
R / Rfree (%) 17.5 / 22

Other elements in 1sox:

The structure of Sulfite Oxidase From Chicken Liver also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Sulfite Oxidase From Chicken Liver (pdb code 1sox). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Sulfite Oxidase From Chicken Liver, PDB code: 1sox:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 1sox

Go back to Molybdenum Binding Sites List in 1sox
Molybdenum binding site 1 out of 2 in the Sulfite Oxidase From Chicken Liver


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Sulfite Oxidase From Chicken Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo505

b:19.1
occ:1.00
O A:HOH1329 1.7 17.9 1.0
O A:HOH913 2.2 22.2 1.0
S2' A:MTE501 2.4 16.0 1.0
S1' A:MTE501 2.4 14.7 1.0
SG A:CYS185 2.5 16.1 1.0
C1' A:MTE501 3.2 15.2 1.0
C2' A:MTE501 3.4 17.1 1.0
CB A:CYS185 3.4 14.6 1.0
CA A:CYS185 3.6 13.4 1.0
N A:ALA186 3.8 10.3 1.0
OH A:TYR322 3.9 18.3 1.0
N A:ALA297 4.1 11.2 1.0
C A:CYS185 4.2 13.9 1.0
CE1 A:TYR322 4.2 16.3 1.0
CG A:ARG138 4.2 13.2 1.0
CZ A:TYR322 4.3 16.7 1.0
NE A:ARG138 4.4 17.9 1.0
CD A:ARG138 4.4 15.8 1.0
CA A:ALA297 4.4 13.6 1.0
CB A:ALA297 4.4 15.3 1.0
C6 A:MTE501 4.6 16.7 1.0
C A:GLY296 4.6 11.8 1.0
O4 A:SO4503 4.7 42.7 1.0
CB A:ARG138 4.9 13.6 1.0
N A:CYS185 4.9 15.1 1.0
C3' A:MTE501 4.9 13.7 1.0
CA A:ALA186 5.0 12.7 1.0
CA A:GLY296 5.0 11.8 1.0
O2 A:SO4503 5.0 38.1 1.0

Molybdenum binding site 2 out of 2 in 1sox

Go back to Molybdenum Binding Sites List in 1sox
Molybdenum binding site 2 out of 2 in the Sulfite Oxidase From Chicken Liver


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Sulfite Oxidase From Chicken Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo505

b:18.5
occ:1.00
O B:HOH1316 1.7 8.5 1.0
O B:HOH912 2.3 17.9 1.0
S2' B:MTE501 2.4 15.2 1.0
S1' B:MTE501 2.4 14.1 1.0
SG B:CYS185 2.5 19.8 1.0
C1' B:MTE501 3.2 16.5 1.0
C2' B:MTE501 3.4 18.5 1.0
CB B:CYS185 3.5 15.8 1.0
CA B:CYS185 3.7 11.0 1.0
N B:ALA186 3.8 15.8 1.0
OH B:TYR322 4.0 16.3 1.0
N B:ALA297 4.0 14.4 1.0
CE1 B:TYR322 4.2 18.5 1.0
CG B:ARG138 4.2 13.1 1.0
C B:CYS185 4.3 15.6 1.0
CZ B:TYR322 4.3 17.1 1.0
NE B:ARG138 4.4 17.6 1.0
CA B:ALA297 4.4 15.0 1.0
CD B:ARG138 4.4 14.5 1.0
CB B:ALA297 4.5 13.1 1.0
C6 B:MTE501 4.6 12.2 1.0
C B:GLY296 4.6 18.2 1.0
O4 B:SO4503 4.7 30.5 1.0
CB B:ARG138 4.8 12.9 1.0
CA B:GLY296 4.9 13.1 1.0
C3' B:MTE501 4.9 15.2 1.0
CA B:ALA186 4.9 15.4 1.0
CB B:ALA186 4.9 17.4 1.0
N B:CYS185 5.0 11.8 1.0
O2 B:SO4503 5.0 23.4 1.0

Reference:

C.Kisker, H.Schindelin, A.Pacheco, W.A.Wehbi, R.M.Garrett, K.V.Rajagopalan, J.H.Enemark, D.C.Rees. Molecular Basis of Sulfite Oxidase Deficiency From the Structure of Sulfite Oxidase. Cell(Cambridge,Mass.) V. 91 973 1997.
ISSN: ISSN 0092-8674
PubMed: 9428520
DOI: 10.1016/S0092-8674(00)80488-2
Page generated: Tue Dec 15 05:16:34 2020

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