Molybdenum in PDB 1v97: Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form

All present enzymatic activity of Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form:
1.1.1.204;

The structure of Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form, PDB code: 1v97 was solved by K.Okamoto, K.Matsumoto, R.Hille, B.T.Eger, E.F.Pai, T.Nishino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.94
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	167.987, 124.612, 146.926, 90.00, 90.99, 90.00
R / Rfree (%)	17.8 / 20.8

The structure of Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form also contains other interesting chemical elements:

Iron	(Fe)	8 atoms
Calcium	(Ca)	2 atoms

The binding sites of Molybdenum atom in the Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form (pdb code 1v97). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form, PDB code: 1v97:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo3004 b:14.4 occ:1.00 MO A:MOS3004 0.0 14.4 1.0 O2 A:MOS3004 1.7 12.8 1.0 O1 A:MOS3004 2.1 16.6 1.0 S2' A:MTE3003 2.4 12.6 1.0 S A:MOS3004 2.4 15.8 1.0 S1' A:MTE3003 2.4 10.2 1.0 C1' A:MTE3003 3.2 12.8 1.0 CPR A:FYX3006 3.3 16.0 1.0 C2' A:MTE3003 3.3 11.9 1.0 NPS A:FYX3006 3.9 17.4 1.0 OE2 A:GLU1261 3.9 12.7 1.0 CA A:GLY799 3.9 11.5 1.0 CB A:ALA1078 4.0 15.9 1.0 N A:GLY799 4.1 9.8 1.0 CD A:GLU1261 4.1 10.3 1.0 N A:ALA1079 4.2 12.1 1.0 CA A:ALA1078 4.4 12.1 1.0 CPO A:FYX3006 4.4 16.7 1.0 C A:PHE798 4.5 10.8 1.0 C6 A:MTE3003 4.5 11.2 1.0 NE2 A:GLN767 4.6 10.1 1.0 CG A:GLU1261 4.6 9.8 1.0 OE1 A:GLU1261 4.6 10.9 1.0 CA A:ARG912 4.7 11.9 1.0 N A:ARG912 4.7 12.2 1.0 O A:PHE798 4.8 11.9 1.0 C3' A:MTE3003 4.8 12.7 1.0 C A:ALA1078 4.8 13.9 1.0 OE2 A:GLU802 4.9 13.8 1.0

Molybdenum binding site 2 out of 2 in the Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of Bovine Milk Xanthine Dehydrogenase Fyx-051 Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo4004 b:14.5 occ:1.00 MO B:MOS4004 0.0 14.5 1.0 O2 B:MOS4004 1.7 10.8 1.0 O1 B:MOS4004 2.0 15.9 1.0 S2' B:MTE4003 2.4 12.7 1.0 S B:MOS4004 2.4 13.6 1.0 S1' B:MTE4003 2.4 9.2 1.0 C1' B:MTE4003 3.2 11.2 1.0 CPR B:FYX4006 3.2 17.6 1.0 C2' B:MTE4003 3.3 12.9 1.0 NPS B:FYX4006 3.8 19.4 1.0 OE2 B:GLU1261 3.9 12.4 1.0 CA B:GLY799 4.0 9.5 1.0 CB B:ALA1078 4.0 13.7 1.0 N B:GLY799 4.1 11.4 1.0 CD B:GLU1261 4.1 12.7 1.0 N B:ALA1079 4.2 13.1 1.0 CPO B:FYX4006 4.4 15.5 1.0 CA B:ALA1078 4.4 11.8 1.0 C B:PHE798 4.5 10.9 1.0 CG B:GLU1261 4.5 9.4 1.0 OE1 B:GLU1261 4.6 12.7 1.0 C6 B:MTE4003 4.6 11.7 1.0 NE2 B:GLN767 4.6 12.4 1.0 CA B:ARG912 4.7 11.5 1.0 N B:ARG912 4.7 11.4 1.0 O B:PHE798 4.7 12.3 1.0 C B:ALA1078 4.8 13.3 1.0 C3' B:MTE4003 4.8 13.4 1.0 OE2 B:GLU802 4.8 14.3 1.0

K.Okamoto, K.Matsumoto, R.Hille, B.T.Eger, E.F.Pai, T.Nishino. The Crystal Structure of Xanthine Oxidoreductase During Catalysis: Implications For Reaction Mechanism and Enzyme Inhibition. Proc.Natl.Acad.Sci.Usa V. 101 7931 2004.
ISSN: ISSN 0027-8424
PubMed: 15148401
DOI: 10.1073/PNAS.0400973101