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Molybdenum in PDB 2bpb: Sulfite Dehydrogenase From Starkeya Novella

Protein crystallography data

The structure of Sulfite Dehydrogenase From Starkeya Novella, PDB code: 2bpb was solved by S.Bailey, U.Kappler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.9
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 97.611, 93.167, 56.123, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 21

Other elements in 2bpb:

The structure of Sulfite Dehydrogenase From Starkeya Novella also contains other interesting chemical elements:

Iron (Fe) 1 atom

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Sulfite Dehydrogenase From Starkeya Novella (pdb code 2bpb). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total only one binding site of Molybdenum was determined in the Sulfite Dehydrogenase From Starkeya Novella, PDB code: 2bpb:

Molybdenum binding site 1 out of 1 in 2bpb

Go back to Molybdenum Binding Sites List in 2bpb
Molybdenum binding site 1 out of 1 in the Sulfite Dehydrogenase From Starkeya Novella


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Sulfite Dehydrogenase From Starkeya Novella within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1374

b:11.8
occ:1.00
MOM1 A:MSS1374 0.0 11.8 1.0
OM1 A:MSS1374 1.7 9.9 1.0
O A:HOH2278 2.2 15.4 1.0
SG A:CYS104 2.3 5.8 1.0
S1' A:MSS1374 2.4 9.7 1.0
S2' A:MSS1374 2.4 9.0 1.0
C1' A:MSS1374 3.3 11.5 1.0
C2' A:MSS1374 3.3 8.3 1.0
CB A:CYS104 3.4 8.1 1.0
CA A:CYS104 3.7 5.9 1.0
N A:SER105 3.7 3.2 1.0
N A:THR211 3.9 11.5 1.0
OH A:TYR236 3.9 7.4 1.0
NE A:ARG55 4.0 15.6 1.0
CE1 A:TYR236 4.2 12.9 1.0
C A:CYS104 4.2 8.1 1.0
CD A:ARG55 4.2 14.7 1.0
O A:HOH2096 4.3 17.4 1.0
CA A:THR211 4.3 8.2 1.0
OG A:SER105 4.3 10.4 1.0
CB A:SER105 4.4 6.5 1.0
C A:GLY210 4.4 12.0 1.0
CB A:THR211 4.4 7.0 1.0
CZ A:TYR236 4.4 15.6 1.0
CG A:ARG55 4.7 18.2 1.0
CA A:GLY210 4.7 5.1 1.0
CA A:SER105 4.7 6.3 1.0
C6 A:MSS1374 4.7 9.9 1.0
C3' A:MSS1374 4.8 9.3 1.0
N A:GLY210 4.9 6.8 1.0
N A:GLY106 4.9 5.4 1.0
O A:HOH2097 4.9 33.6 1.0
N A:CYS104 5.0 4.9 1.0

Reference:

U.Kappler, S.Bailey. Molecular Basis of Intramolecular Electron Transfer in Sulfite-Oxidizing Enzymes Is Revealed By High Resolution Structure of A Heterodimeric Complex of the Catalytic Molybdopterin Subunit and A C-Type Cytochrome Subunit. J.Biol.Chem. V. 280 24999 2005.
ISSN: ISSN 0021-9258
PubMed: 15863498
DOI: 10.1074/JBC.M503237200
Page generated: Tue Dec 15 05:17:00 2020

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