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Molybdenum in PDB 2h5y: Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate

Protein crystallography data

The structure of Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate, PDB code: 2h5y was solved by A.Balan, C.P.Santacruz, L.C.S.Ferreira, J.A.R.G.Barbosa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.07 / 1.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 68.153, 172.138, 112.036, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.2

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate (pdb code 2h5y). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 3 binding sites of Molybdenum where determined in the Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate, PDB code: 2h5y:
Jump to Molybdenum binding site number: 1; 2; 3;

Molybdenum binding site 1 out of 3 in 2h5y

Go back to Molybdenum Binding Sites List in 2h5y
Molybdenum binding site 1 out of 3 in the Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1300

b:24.4
occ:1.00
MO A:MOO1300 0.0 24.4 1.0
O1 A:MOO1300 1.8 23.4 1.0
O2 A:MOO1300 1.8 23.4 1.0
O4 A:MOO1300 1.8 24.4 1.0
O3 A:MOO1300 1.8 25.7 1.0
CB A:ALA58 3.9 24.6 1.0
CG1 A:VAL152 4.0 23.9 1.0
CE2 A:TYR170 4.1 22.8 1.0
N A:ALA11 4.1 22.7 1.0
CD A:PRO124 4.2 22.4 1.0
OH A:TYR170 4.2 24.4 1.0
CG1 A:VAL123 4.2 22.1 1.0
CB A:VAL152 4.2 23.4 1.0
OG A:SER39 4.2 23.4 1.0
N A:VAL152 4.2 22.3 1.0
CB A:ALA10 4.3 22.9 1.0
OG A:SER12 4.3 22.3 1.0
N A:SER39 4.3 22.6 1.0
N A:SER12 4.4 22.7 1.0
CA A:ALA38 4.5 23.4 1.0
N A:ALA125 4.5 22.8 1.0
CB A:ALA11 4.5 22.8 1.0
CB A:PRO124 4.6 23.6 1.0
CG A:PRO124 4.6 22.3 1.0
CZ A:TYR170 4.7 22.8 1.0
CA A:ALA10 4.7 23.1 1.0
N A:PRO124 4.7 22.9 1.0
C A:ALA10 4.7 23.3 1.0
CB A:ALA125 4.8 22.5 1.0
CB A:SER12 4.8 22.3 1.0
CA A:ALA11 4.8 22.8 1.0
CA A:VAL152 4.8 23.2 1.0
C A:ALA38 5.0 22.9 1.0
O A:ALA37 5.0 24.1 1.0

Molybdenum binding site 2 out of 3 in 2h5y

Go back to Molybdenum Binding Sites List in 2h5y
Molybdenum binding site 2 out of 3 in the Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo2300

b:24.7
occ:1.00
MO B:MOO2300 0.0 24.7 1.0
O1 B:MOO2300 1.7 24.1 1.0
O4 B:MOO2300 1.7 22.6 1.0
O3 B:MOO2300 1.8 23.8 1.0
O2 B:MOO2300 1.8 24.6 1.0
CB B:ALA58 3.8 24.6 1.0
CG1 B:VAL152 3.9 24.0 1.0
CG1 B:VAL123 4.1 22.7 1.0
CD B:PRO124 4.1 23.4 1.0
CE2 B:TYR170 4.1 22.6 1.0
N B:ALA11 4.1 22.4 1.0
OH B:TYR170 4.2 23.6 1.0
CB B:VAL152 4.2 23.9 1.0
CB B:ALA10 4.2 21.9 1.0
OG B:SER12 4.3 23.2 1.0
N B:VAL152 4.3 22.4 1.0
OG B:SER39 4.3 23.0 1.0
N B:SER39 4.3 22.9 1.0
N B:SER12 4.4 21.9 1.0
CA B:ALA38 4.4 23.2 1.0
CB B:PRO124 4.4 22.6 1.0
N B:ALA125 4.5 22.2 1.0
CB B:ALA11 4.5 22.4 1.0
CG B:PRO124 4.5 23.3 1.0
CZ B:TYR170 4.7 22.7 1.0
CA B:ALA10 4.7 22.6 1.0
CB B:ALA125 4.7 22.7 1.0
N B:PRO124 4.7 22.8 1.0
C B:ALA10 4.7 22.2 1.0
CB B:SER12 4.8 23.1 1.0
CA B:ALA11 4.8 22.5 1.0
CA B:VAL152 4.9 23.8 1.0
C B:ALA38 4.9 23.4 1.0
CB B:ALA38 4.9 23.2 1.0
O B:ALA37 5.0 24.1 1.0

Molybdenum binding site 3 out of 3 in 2h5y

Go back to Molybdenum Binding Sites List in 2h5y
Molybdenum binding site 3 out of 3 in the Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Crystallographic Structure of the Molybdate-Binding Protein of Xanthomonas Citri at 1.7 Ang Resolution Bound to Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo3300

b:24.2
occ:1.00
MO C:MOO3300 0.0 24.2 1.0
O1 C:MOO3300 1.7 24.5 1.0
O4 C:MOO3300 1.8 23.8 1.0
O2 C:MOO3300 1.8 23.4 1.0
O3 C:MOO3300 1.8 24.9 1.0
CB C:ALA58 3.8 24.2 1.0
CG1 C:VAL152 4.0 22.5 1.0
CE2 C:TYR170 4.1 24.1 1.0
OH C:TYR170 4.1 23.6 1.0
CG1 C:VAL123 4.2 21.3 1.0
N C:ALA11 4.2 22.0 1.0
CB C:VAL152 4.2 23.8 1.0
CD C:PRO124 4.2 21.1 1.0
N C:VAL152 4.2 22.6 1.0
CB C:ALA10 4.2 22.5 1.0
OG C:SER12 4.3 23.0 1.0
OG C:SER39 4.3 22.9 1.0
N C:SER39 4.3 22.5 1.0
N C:SER12 4.4 21.8 1.0
CB C:PRO124 4.4 21.6 1.0
N C:ALA125 4.4 21.3 1.0
CB C:ALA11 4.5 21.9 1.0
CA C:ALA38 4.5 22.2 1.0
CG C:PRO124 4.5 21.6 1.0
CZ C:TYR170 4.7 22.6 1.0
N C:PRO124 4.7 21.3 1.0
CB C:SER12 4.8 22.3 1.0
CA C:ALA10 4.8 22.6 1.0
C C:ALA10 4.8 22.0 1.0
CA C:ALA11 4.8 21.3 1.0
CB C:ALA125 4.8 21.9 1.0
CA C:VAL152 4.9 22.6 1.0
C C:ALA38 5.0 21.9 1.0
CB C:SER39 5.0 22.4 1.0

Reference:

C.P.Santacruz, A.Balan, L.C.Ferreira, J.A.R.G.Barbosa. Crystallization, Data Collection and Phasing of the Molybdate-Binding Protein of the Phytopathogen Xanthomonas Axonopodis Pv. Citri Acta Crystallogr.,Sect.F V. 62 289 2006.
ISSN: ESSN 1744-3091
PubMed: 16511325
DOI: 10.1107/S1744309106003812
Page generated: Tue Dec 15 05:17:06 2020

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