Chemical elements
  Molybdenum
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    Alloys
    Compounds
    PDB 1aa6-1qh8
    PDB 1r27-2jir
      1r27
      1rm6
      1sb3
      1sij
      1sox
      1t3q
      1ti2
      1ti4
      1ti6
      1tmo
      1v97
      1vdv
      1vlb
      1vld
      1vle
      1vlf
      1xdq
      1y4z
      1y5i
      1y5l
      1y5n
      1z13
      1zxi
      2a3p
      2a99
      2a9a
      2a9b
      2a9c
      2a9d
      2afh
      2afi
      2afk
      2bih
      2bii
      2blf
      2bpb
      2c9x
      2ca3
      2ca4
      2dmr
      2e1q
      2h5y
      2inn
      2iv2
      2ivf
      2jim
      2jio
      2jip
      2jiq
      2jir
    PDB 2min-3unc
    PDB 3uni-4f6t

Molybdenum in the structure of A New Catalytic Mechanism Of Periplasmic Nitrate Reductase From Desulfovibrio Desulfuricans Atcc 27774 From Crystallographic And Epr Data and Based on Detailed Analysis of the Sixth Ligand (pdb 2jiq)






The binding sites of Molybdenum atom in the structure of A New Catalytic Mechanism Of Periplasmic Nitrate Reductase From Desulfovibrio Desulfuricans Atcc 27774 From Crystallographic And Epr Data and Based on Detailed Analysis of the Sixth Ligand (pdb code 2jiq). This binding sites where shown with 5.0 Angstroms radius around Molybdenum atom.
The 2jiq structure was solved by S.NAJMUDIN, P.J.GONZALEZ, J.TRINCAO, C.COELHO, A.MUKHOPADHYAY, C.C.ROMAO, I.MOURA, J.J.G.MOURA, C.D.BRONDINO, M.J.ROMAO, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)91.3-2.4
Space groupP3121
a (A)105.212
b (A)105.212
c (A)130.685
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)15.5
Rfree (%)24.8


Molybdenum Binding Sites:

Molybdenum binding site 1 out of 1 in 2jiq


Molybdenum binding site 1 out of 1 in 2jiq
Click to enlarge
stereopicture of Molybdenum binding site 1 out of 1 in 2jiq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Molybdenum in the PDB 2jiq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys140, A: Met141, A: Met308, A: Gly345, A: Gln346, A: Arg617, A: His623, A: Mgd811, A: Mgd812, A: Unx813,

conact list:


AtomAtomDistance (A)
MoCB A:Cys1403.39
MoSG A:Cys1402.24
MoCA A:Cys1404.47
MoCE A:Met1414.43
MoSD A:Met3084.90
MoN A:Gly3454.77
MoC A:Gly3454.62
MoCA A:Gly3454.32
MoNE2 A:Gln3464.61
MoN A:Gln3464.46
MoCD A:Gln3464.82
MoCG A:Gln3464.52
MoNH2 A:Arg6173.90
MoNE2 A:His6234.54
MoCE1 A:His6234.87
MoS13 A:Mgd8112.49
MoC11 A:Mgd8114.82
MoC13 A:Mgd8113.39
MoC12 A:Mgd8113.37
MoC14 A:Mgd8114.82
MoS12 A:Mgd8112.39
MoS13 A:Mgd8122.32
MoC11 A:Mgd8124.80
MoC13 A:Mgd8123.34
MoC12 A:Mgd8123.36
MoC14 A:Mgd8124.77
MoS12 A:Mgd8122.37
MoUNK A:Unx8132.54

interactive model:




© Copyright 2008-2012 by atomistry.com