Chemical elements
  Molybdenum
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    Compounds
    PDB 1aa6-1qh8
    PDB 1r27-2jir
    PDB 2min-3unc
      2min
      2nap
      2nya
      2onr
      2r8u
      2v3v
      2v45
      2vpw
      2vpx
      2vpy
      2vpz
      2w3r
      2w3s
      2w54
      2w55
      2xts
      3am9
      3amz
      3b9j
      3bdj
      3dmr
      3egw
      3etr
      3eub
      3fah
      3fc4
      3gzg
      3hbg
      3hbp
      3hbq
      3hc2
      3hrd
      3ir5
      3ir7
      3k1a
      3k6w
      3k6x
      3k7r
      3l4p
      3min
      3nrz
      3ns1
      3nvv
      3nvw
      3nvy
      3nvz
      3rca
      3rvr
      3una
      3unc
    PDB 3uni-4f6t

Molybdenum in the structure of Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate-Binding Protein (Moda) Mutant (K127S) (pdb 3gzg)






The binding sites of Molybdenum atom in the structure of Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate-Binding Protein (Moda) Mutant (K127S) (pdb code 3gzg). This binding sites where shown with 5.0 Angstroms radius around Molybdenum atom.
The 3gzg structure was solved by C.SANTACRUZ-PEREZ, V.R.PEGOS, A.BALAN, J.A.R.G.BARBOSA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)25.7-1.6
Space groupC2221
a (A)67.075
b (A)171.648
c (A)113.861
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)20.2
Rfree (%)23.5


Molybdenum Binding Sites:

Molybdenum binding site 1 out of 3 in 3gzg


Molybdenum binding site 1 out of 3 in 3gzg
Click to enlarge
stereopicture of Molybdenum binding site 1 out of 3 in 3gzg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Molybdenum in the PDB 3gzg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ala10, A: Ala11, A: Ser12, A: Ala38, A: Ser39, A: Ala58, A: Val123, A: Pro124, A: Ala125, A: Val152, A: Tyr170, A: Moo1300,

conact list:


AtomAtomDistance (A)
MoC A:Ala104.81
MoCB A:Ala104.23
MoCA A:Ala104.78
MoN A:Ala114.18
MoCB A:Ala114.49
MoCA A:Ala114.81
MoN A:Ser124.42
MoCB A:Ser124.86
MoOG A:Ser124.25
MoC A:Ala385.00
MoCA A:Ala384.53
MoN A:Ser394.40
MoOG A:Ser394.18
MoCB A:Ala583.89
MoCG1 A:Val1234.22
MoN A:Pro1244.77
MoCB A:Pro1244.56
MoCD A:Pro1244.22
MoCG A:Pro1244.59
MoN A:Ala1254.56
MoCB A:Ala1254.81
MoN A:Val1524.32
MoCB A:Val1524.28
MoCG1 A:Val1524.06
MoCA A:Val1524.94
MoCE2 A:Tyr1704.22
MoCZ A:Tyr1704.71
MoOH A:Tyr1704.17
MoO1 A:Moo13001.83
MoMO A:Moo13000.00
MoO2 A:Moo13001.84
MoO4 A:Moo13001.99
MoO3 A:Moo13001.99

interactive model:


Molybdenum binding site 2 out of 3 in 3gzg


Molybdenum binding site 2 out of 3 in 3gzg
Click to enlarge
stereopicture of Molybdenum binding site 2 out of 3 in 3gzg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Molybdenum in the PDB 3gzg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ala10, B: Ala11, B: Ser12, B: Ala38, B: Ser39, B: Ala58, B: Val123, B: Pro124, B: Ala125, B: Val152, B: Tyr170, B: Moo2300,

conact list:


AtomAtomDistance (A)
MoC B:Ala104.83
MoCB B:Ala104.24
MoCA B:Ala104.79
MoN B:Ala114.23
MoCB B:Ala114.58
MoCA B:Ala114.86
MoN B:Ser124.44
MoCB B:Ser124.86
MoOG B:Ser124.33
MoC B:Ala384.92
MoCB B:Ala384.92
MoCA B:Ala384.39
MoN B:Ser394.34
MoOG B:Ser394.23
MoCB B:Ala583.88
MoCG1 B:Val1234.20
MoN B:Pro1244.79
MoCB B:Pro1244.56
MoCD B:Pro1244.32
MoCG B:Pro1244.60
MoN B:Ala1254.54
MoCB B:Ala1254.80
MoN B:Val1524.32
MoCB B:Val1524.19
MoCG1 B:Val1523.82
MoCA B:Val1524.91
MoCE2 B:Tyr1704.14
MoCZ B:Tyr1704.65
MoOH B:Tyr1704.13
MoO1 B:Moo23001.79
MoMO B:Moo23000.00
MoO2 B:Moo23001.85
MoO4 B:Moo23001.98
MoO3 B:Moo23002.02

interactive model:


Molybdenum binding site 3 out of 3 in 3gzg


Molybdenum binding site 3 out of 3 in 3gzg
Click to enlarge
stereopicture of Molybdenum binding site 3 out of 3 in 3gzg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Molybdenum in the PDB 3gzg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Ala10, C: Ala11, C: Ser12, C: Ala38, C: Ser39, C: Ala58, C: Val123, C: Pro124, C: Ala125, C: Val152, C: Tyr170, C: Moo3300,

conact list:


AtomAtomDistance (A)
MoC C:Ala104.79
MoCB C:Ala104.26
MoCA C:Ala104.81
MoN C:Ala114.17
MoCB C:Ala114.49
MoCA C:Ala114.80
MoN C:Ser124.37
MoCB C:Ser124.84
MoOG C:Ser124.29
MoCA C:Ala384.58
MoN C:Ser394.39
MoOG C:Ser394.23
MoCB C:Ala583.84
MoCG1 C:Val1234.14
MoN C:Pro1244.74
MoCB C:Pro1244.56
MoCD C:Pro1244.21
MoCG C:Pro1244.53
MoN C:Ala1254.50
MoCB C:Ala1254.78
MoN C:Val1524.37
MoCB C:Val1524.31
MoCG1 C:Val1523.92
MoCA C:Val1524.99
MoCE2 C:Tyr1704.24
MoCZ C:Tyr1704.72
MoOH C:Tyr1704.16
MoO1 C:Moo33001.83
MoMO C:Moo33000.00
MoO2 C:Moo33001.89
MoO4 C:Moo33002.02
MoO3 C:Moo33001.97

interactive model:




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