Molybdenum in PDB 3gzg: Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S)

The structure of Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S), PDB code: 3gzg was solved by C.Santacruz-Perez, V.R.Pegos, A.Balan, J.A.R.G.Barbosa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.74 / 1.55
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	67.075, 171.648, 113.861, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 23.5

The binding sites of Molybdenum atom in the Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S) (pdb code 3gzg). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 3 binding sites of Molybdenum where determined in the Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S), PDB code: 3gzg:
Jump to Molybdenum binding site number: 1; 2; 3;

Molybdenum binding site 1 out of 3 in the Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo1300 b:13.9 occ:1.00 MO A:MOO1300 0.0 13.9 1.0 O1 A:MOO1300 1.8 12.9 1.0 O2 A:MOO1300 1.8 14.5 1.0 O3 A:MOO1300 2.0 13.9 1.0 O4 A:MOO1300 2.0 14.2 1.0 CB A:ALA58 3.9 13.5 1.0 CG1 A:VAL152 4.1 13.7 1.0 OH A:TYR170 4.2 13.4 1.0 N A:ALA11 4.2 12.0 1.0 OG A:SER39 4.2 13.2 1.0 CE2 A:TYR170 4.2 13.0 1.0 CD A:PRO124 4.2 13.1 1.0 CG1 A:VAL123 4.2 13.5 1.0 CB A:ALA10 4.2 12.6 1.0 OG A:SER12 4.2 12.8 1.0 CB A:VAL152 4.3 13.1 1.0 N A:VAL152 4.3 13.3 1.0 N A:SER39 4.4 12.8 1.0 N A:SER12 4.4 11.7 1.0 CB A:ALA11 4.5 13.6 1.0 CA A:ALA38 4.5 12.9 1.0 N A:ALA125 4.6 13.1 1.0 CB A:PRO124 4.6 13.6 1.0 CG A:PRO124 4.6 11.6 1.0 CZ A:TYR170 4.7 13.2 1.0 N A:PRO124 4.8 12.6 1.0 CA A:ALA10 4.8 13.2 1.0 C A:ALA10 4.8 12.6 1.0 CB A:ALA125 4.8 12.6 1.0 CA A:ALA11 4.8 12.6 1.0 CB A:SER12 4.9 11.2 1.0 CA A:VAL152 4.9 12.6 1.0 C A:ALA38 5.0 12.5 1.0

Molybdenum binding site 2 out of 3 in the Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo2300 b:12.9 occ:1.00 MO B:MOO2300 0.0 12.9 1.0 O1 B:MOO2300 1.8 10.3 1.0 O2 B:MOO2300 1.8 13.5 1.0 O4 B:MOO2300 2.0 13.4 1.0 O3 B:MOO2300 2.0 16.1 1.0 CG1 B:VAL152 3.8 12.6 1.0 CB B:ALA58 3.9 13.3 1.0 OH B:TYR170 4.1 12.4 1.0 CE2 B:TYR170 4.1 13.4 1.0 CB B:VAL152 4.2 12.8 1.0 CG1 B:VAL123 4.2 14.1 1.0 OG B:SER39 4.2 13.6 1.0 N B:ALA11 4.2 10.7 1.0 CB B:ALA10 4.2 11.1 1.0 CD B:PRO124 4.3 14.1 1.0 N B:VAL152 4.3 13.0 1.0 OG B:SER12 4.3 11.8 1.0 N B:SER39 4.3 12.5 1.0 CA B:ALA38 4.4 11.6 1.0 N B:SER12 4.4 12.2 1.0 N B:ALA125 4.5 14.5 1.0 CB B:PRO124 4.6 14.4 1.0 CB B:ALA11 4.6 11.6 1.0 CG B:PRO124 4.6 13.6 1.0 CZ B:TYR170 4.7 14.9 1.0 CA B:ALA10 4.8 10.7 1.0 N B:PRO124 4.8 14.3 1.0 CB B:ALA125 4.8 13.7 1.0 C B:ALA10 4.8 11.3 1.0 CB B:SER12 4.9 11.2 1.0 CA B:ALA11 4.9 11.6 1.0 CA B:VAL152 4.9 13.9 1.0 C B:ALA38 4.9 11.5 1.0 CB B:ALA38 4.9 11.7 1.0

Molybdenum binding site 3 out of 3 in the Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate- Binding Protein (Moda) Mutant (K127S) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mo3300 b:16.1 occ:1.00 MO C:MOO3300 0.0 16.1 1.0 O1 C:MOO3300 1.8 12.7 1.0 O2 C:MOO3300 1.9 13.6 1.0 O3 C:MOO3300 2.0 15.6 1.0 O4 C:MOO3300 2.0 16.4 1.0 CB C:ALA58 3.8 15.8 1.0 CG1 C:VAL152 3.9 14.3 1.0 CG1 C:VAL123 4.1 19.8 1.0 OH C:TYR170 4.2 17.1 1.0 N C:ALA11 4.2 12.8 1.0 CD C:PRO124 4.2 18.2 1.0 OG C:SER39 4.2 16.9 1.0 CE2 C:TYR170 4.2 15.6 1.0 CB C:ALA10 4.3 13.5 1.0 OG C:SER12 4.3 14.7 1.0 CB C:VAL152 4.3 13.5 1.0 N C:VAL152 4.4 14.3 1.0 N C:SER12 4.4 13.0 1.0 N C:SER39 4.4 15.9 1.0 CB C:ALA11 4.5 12.8 1.0 N C:ALA125 4.5 17.6 1.0 CG C:PRO124 4.5 17.6 1.0 CB C:PRO124 4.6 17.7 1.0 CA C:ALA38 4.6 15.1 1.0 CZ C:TYR170 4.7 17.0 1.0 N C:PRO124 4.7 18.5 1.0 CB C:ALA125 4.8 17.3 1.0 C C:ALA10 4.8 13.5 1.0 CA C:ALA11 4.8 12.7 1.0 CA C:ALA10 4.8 14.0 1.0 CB C:SER12 4.8 13.1 1.0 CA C:VAL152 5.0 14.0 1.0

C.Santacruz-Perez, V.R.Pegos, A.Balan, J.A.R.G.Barbosa. Crystal Structure of the Xanthomonas Axonopodis Pv. Citri Molybdate-Binding Protein (Moda) Mutant (K127S) To Be Published.