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Molybdenum in PDB 3ml1: Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator

Enzymatic activity of Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator

All present enzymatic activity of Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator:
1.7.99.4; 1.9.6.1;

Protein crystallography data

The structure of Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator, PDB code: 3ml1 was solved by C.Coelho, J.Trincao, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.48 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 142.202, 82.384, 96.837, 90.00, 100.72, 90.00
R / Rfree (%) 15.7 / 19

Other elements in 3ml1:

The structure of Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator also contains other interesting chemical elements:

Iron (Fe) 6 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator (pdb code 3ml1). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total only one binding site of Molybdenum was determined in the Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator, PDB code: 3ml1:

Molybdenum binding site 1 out of 1 in 3ml1

Go back to Molybdenum Binding Sites List in 3ml1
Molybdenum binding site 1 out of 1 in the Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of the Periplasmic Nitrate Reductase From Cupriavidus Necator within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1802

b:10.1
occ:1.00
MO A:MOS1802 0.0 10.1 1.0
S13 A:MGD1804 2.3 9.5 1.0
S A:MOS1802 2.4 13.7 1.0
S12 A:MGD1803 2.4 10.7 1.0
S13 A:MGD1803 2.4 9.7 1.0
S12 A:MGD1804 2.4 9.9 1.0
SG A:CYS152 2.5 10.9 1.0
CB A:CYS152 3.1 6.7 1.0
C13 A:MGD1804 3.4 10.6 1.0
C12 A:MGD1804 3.4 8.3 1.0
C12 A:MGD1803 3.5 8.9 1.0
C13 A:MGD1803 3.5 7.9 1.0
NH2 A:ARG694 3.7 6.9 1.0
CA A:GLY383 4.1 6.7 1.0
CA A:CYS152 4.3 7.6 1.0
NE2 A:HIS700 4.4 7.6 1.0
N A:GLN384 4.4 7.8 1.0
CG A:GLN384 4.5 9.9 1.0
C A:GLY383 4.6 7.7 1.0
SD A:MET346 4.6 8.3 1.0
OE1 A:GLN384 4.7 14.7 1.0
CE1 A:HIS700 4.7 7.7 1.0
CZ A:ARG694 4.7 7.9 1.0
C14 A:MGD1804 4.8 6.0 1.0
N A:GLY383 4.8 7.2 1.0
C14 A:MGD1803 4.8 10.8 1.0
C11 A:MGD1803 4.9 7.6 1.0
C11 A:MGD1804 4.9 10.1 1.0
CE A:MET346 4.9 9.8 1.0

Reference:

C.Coelho, P.J.Gonzalez, J.J.G.Moura, I.Moura, J.Trincao, M.J.Romao. The Crystal Structure of Cupriavidus Necator Nitrate Reductase in Oxidized and Partially Reduced States J.Mol.Biol. V. 408 932 2011.
ISSN: ISSN 0022-2836
PubMed: 21419779
DOI: 10.1016/J.JMB.2011.03.016
Page generated: Tue Dec 15 05:18:12 2020

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