Chemical elements
  Molybdenum
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    Compounds
    PDB 1aa6-1qh8
    PDB 1r27-2jir
    PDB 2min-3unc
    PDB 3uni-4f6t
      3uni
      4dmr
      4f6t

Molybdenum in the structure of Crystal Structure of Bovine Milk Xanthine Dehydrogenase With Nadh Bound (pdb 3uni)






The binding sites of Molybdenum atom in the structure of Crystal Structure of Bovine Milk Xanthine Dehydrogenase With Nadh Bound (pdb code 3uni). This binding sites where shown with 5.0 Angstroms radius around Molybdenum atom.
The 3uni structure was solved by B.T.EGER, K.OKAMOTO, T.NISHINO, E.F.PAI, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.2
Space groupP1211
a (A)100.036
b (A)146.698
c (A)107.016
alpha (°)90.00
beta (°)106.03
gamma (°)90.00
Rfactor (%)19.8
Rfree (%)24


Molybdenum Binding Sites:

Molybdenum binding site 1 out of 2 in 3uni


Molybdenum binding site 1 out of 2 in 3uni
Click to enlarge
stereopicture of Molybdenum binding site 1 out of 2 in 3uni
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Molybdenum in the PDB 3uni. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gln767, A: Phe798, A: Gly799, A: Glu802, A: Arg912, A: Ala1078, A: Ala1079, A: Glu1261, A: Mte1335, A: Mos1336, A: Hoh1440,

conact list:


AtomAtomDistance (A)
MoNE2 A:Gln7674.58
MoO A:Phe7984.57
MoC A:Phe7984.44
MoN A:Gly7994.19
MoCA A:Gly7994.09
MoOE2 A:Glu8024.59
MoN A:Arg9124.64
MoCA A:Arg9124.58
MoC A:Ala10784.70
MoCB A:Ala10783.97
MoCA A:Ala10784.22
MoN A:Ala10794.11
MoOE1 A:Glu12614.70
MoOE2 A:Glu12613.39
MoCD A:Glu12613.99
MoCG A:Glu12614.47
MoC3' A:Mte13354.67
MoS1' A:Mte13352.41
MoC6 A:Mte13354.77
MoC1' A:Mte13353.35
MoS2' A:Mte13352.31
MoC2' A:Mte13353.30
MoC4' A:Mte13354.95
MoS A:Mos13362.39
MoO1 A:Mos13362.22
MoMO A:Mos13360.00
MoO2 A:Mos13361.66
MoO A:Hoh14403.82

interactive model:


Molybdenum binding site 2 out of 2 in 3uni


Molybdenum binding site 2 out of 2 in 3uni
Click to enlarge
stereopicture of Molybdenum binding site 2 out of 2 in 3uni
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Molybdenum in the PDB 3uni. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Molybdenum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Gln767, B: Phe798, B: Gly799, B: Glu802, B: Arg912, B: Thr1077, B: Ala1078, B: Ala1079, B: Glu1261, B: Mte1335, B: Mos1336, B: Hoh1552,

conact list:


AtomAtomDistance (A)
MoNE2 B:Gln7674.58
MoO B:Phe7984.46
MoC B:Phe7984.43
MoN B:Gly7994.29
MoCA B:Gly7994.17
MoOE2 B:Glu8024.67
MoN B:Arg9124.62
MoCA B:Arg9124.58
MoO B:Thr10774.98
MoC B:Ala10784.74
MoCB B:Ala10783.94
MoCA B:Ala10784.23
MoN B:Ala10794.18
MoOE1 B:Glu12614.52
MoOE2 B:Glu12613.38
MoCD B:Glu12613.92
MoCG B:Glu12614.48
MoC3' B:Mte13354.70
MoS1' B:Mte13352.37
MoC6 B:Mte13354.79
MoC1' B:Mte13353.36
MoS2' B:Mte13352.28
MoC2' B:Mte13353.32
MoC4' B:Mte13354.98
MoS B:Mos13362.38
MoO1 B:Mos13362.22
MoMO B:Mos13360.00
MoO2 B:Mos13361.68
MoO B:Hoh15523.85

interactive model:




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