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Molybdenum in PDB 3zyv: Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)

Enzymatic activity of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)

All present enzymatic activity of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3):
1.2.3.1;

Protein crystallography data

The structure of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3), PDB code: 3zyv was solved by J.Trincao, C.Coelho, M.Mahro, D.Rodrigues, M.Terao, E.Garattini, S.Leimkuehler, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.906 / 2.54
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 90.880, 135.270, 147.370, 78.16, 77.72, 89.90
R / Rfree (%) 25.55 / 28.5

Other elements in 3zyv:

The structure of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) also contains other interesting chemical elements:

Iron (Fe) 16 atoms
Sodium (Na) 4 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) (pdb code 3zyv). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 4 binding sites of Molybdenum where determined in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3), PDB code: 3zyv:
Jump to Molybdenum binding site number: 1; 2; 3; 4;

Molybdenum binding site 1 out of 4 in 3zyv

Go back to Molybdenum Binding Sites List in 3zyv
Molybdenum binding site 1 out of 4 in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo3004

b:55.9
occ:1.00
MO A:MOS3004 0.0 55.9 1.0
O1 A:MOS3004 1.9 77.8 1.0
O2 A:MOS3004 1.9 69.1 1.0
S A:MOS3004 2.3 42.1 1.0
S1' A:MTE3003 2.5 32.2 1.0
S2' A:MTE3003 2.6 27.4 1.0
C1' A:MTE3003 3.6 37.9 1.0
C2' A:MTE3003 3.6 33.7 1.0
OE2 A:GLU1266 4.2 54.2 1.0
N A:ALA1084 4.2 41.3 1.0
CA A:GLY804 4.3 30.4 1.0
CA A:GLY1083 4.4 38.7 1.0
CD A:GLU1266 4.5 54.3 1.0
N A:GLY804 4.5 28.3 1.0
O A:PHE803 4.7 30.2 1.0
C A:PHE803 4.7 28.0 1.0
OE1 A:GLN772 4.7 28.2 1.0
CG A:GLU1266 4.8 49.1 1.0
O A:HOH2181 4.8 16.6 1.0
C A:GLY1083 4.8 40.9 1.0
N A:ARG917 4.9 26.0 1.0
CA A:ARG917 4.9 25.0 1.0
C6 A:MTE3003 5.0 37.5 1.0

Molybdenum binding site 2 out of 4 in 3zyv

Go back to Molybdenum Binding Sites List in 3zyv
Molybdenum binding site 2 out of 4 in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo3004

b:55.9
occ:1.00
MO B:MOS3004 0.0 55.9 1.0
O1 B:MOS3004 1.9 77.8 1.0
O2 B:MOS3004 1.9 69.1 1.0
S B:MOS3004 2.3 42.1 1.0
S1' B:MTE3003 2.5 51.2 1.0
S2' B:MTE3003 2.6 67.4 1.0
C1' B:MTE3003 3.6 44.1 1.0
C2' B:MTE3003 3.6 39.9 1.0
OE2 B:GLU1266 4.2 53.5 1.0
N B:ALA1084 4.2 39.8 1.0
CA B:GLY804 4.3 30.3 1.0
CA B:GLY1083 4.4 38.8 1.0
CD B:GLU1266 4.5 53.6 1.0
N B:GLY804 4.5 29.5 1.0
C B:PHE803 4.7 29.8 1.0
OE1 B:GLN772 4.7 27.2 1.0
O B:PHE803 4.7 31.6 1.0
CG B:GLU1266 4.8 48.9 1.0
C B:GLY1083 4.8 41.5 1.0
N B:ARG917 4.9 27.6 1.0
CA B:ARG917 4.9 24.5 1.0

Molybdenum binding site 3 out of 4 in 3zyv

Go back to Molybdenum Binding Sites List in 3zyv
Molybdenum binding site 3 out of 4 in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo3004

b:55.9
occ:1.00
MO C:MOS3004 0.0 55.9 1.0
O1 C:MOS3004 1.9 77.8 1.0
O2 C:MOS3004 1.9 69.1 1.0
S C:MOS3004 2.3 42.1 1.0
S1' C:MTE3003 2.4 61.9 1.0
S2' C:MTE3003 2.6 43.1 1.0
C1' C:MTE3003 3.4 46.1 1.0
C2' C:MTE3003 3.5 38.0 1.0
OE2 C:GLU1266 4.2 55.6 1.0
N C:ALA1084 4.2 40.0 1.0
CA C:GLY804 4.2 31.5 1.0
CA C:GLY1083 4.4 40.0 1.0
N C:GLY804 4.5 31.2 1.0
CD C:GLU1266 4.5 54.4 1.0
C C:PHE803 4.7 31.1 1.0
OE1 C:GLN772 4.7 29.6 1.0
O C:PHE803 4.7 32.8 1.0
CG C:GLU1266 4.8 48.9 1.0
O C:HOH2105 4.8 38.1 1.0
C C:GLY1083 4.8 40.8 1.0
C6 C:MTE3003 4.9 41.6 1.0
N C:ARG917 4.9 35.1 1.0
CA C:ARG917 4.9 35.6 1.0
C3' C:MTE3003 4.9 28.5 1.0

Molybdenum binding site 4 out of 4 in 3zyv

Go back to Molybdenum Binding Sites List in 3zyv
Molybdenum binding site 4 out of 4 in the Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Crystal Structure of the Mouse Liver Aldehyde Oxidase 3 (MAOX3) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mo3004

b:55.9
occ:1.00
MO D:MOS3004 0.0 55.9 1.0
O1 D:MOS3004 1.9 77.8 1.0
O2 D:MOS3004 1.9 69.1 1.0
S D:MOS3004 2.3 42.1 1.0
S1' D:MTE3003 2.4 20.3 1.0
S2' D:MTE3003 2.7 49.9 1.0
C1' D:MTE3003 3.5 15.5 1.0
C2' D:MTE3003 3.6 17.8 1.0
N D:ALA1084 4.2 41.6 1.0
OE2 D:GLU1266 4.2 54.6 1.0
CA D:GLY804 4.3 37.7 1.0
CA D:GLY1083 4.4 38.7 1.0
CD D:GLU1266 4.5 54.0 1.0
N D:GLY804 4.5 37.2 1.0
C D:PHE803 4.7 37.7 1.0
OE1 D:GLN772 4.7 36.2 1.0
O D:PHE803 4.7 38.6 1.0
CG D:GLU1266 4.8 49.4 1.0
C D:GLY1083 4.8 41.5 1.0
N D:ARG917 4.9 41.2 1.0
CA D:ARG917 4.9 41.8 1.0
C6 D:MTE3003 5.0 23.3 1.0

Reference:

C.Coelho, M.Mahro, J.Trincao, A.T.P.Carvalho, M.J.Ramos, M.Terao, E.Garattini, S.Leimkuhler, M.J.Romao. The First Mammalian Aldehyde Oxidase Crystal Structure: Insights Into Substrate Specificity. J.Biol.Chem. V. 287 40690 2012.
ISSN: ISSN 0021-9258
PubMed: 23019336
DOI: 10.1074/JBC.M112.390419
Page generated: Tue Dec 15 05:18:45 2020

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