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Molybdenum in PDB 4c7y: Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide

Enzymatic activity of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide

All present enzymatic activity of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide:
1.2.99.7;

Protein crystallography data

The structure of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide, PDB code: 4c7y was solved by H.D.Correia, M.J.Romao, T.Santos-Silva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 124.06 / 1.57
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.250, 143.250, 162.300, 90.00, 90.00, 120.00
R / Rfree (%) 13.44 / 15.792

Other elements in 4c7y:

The structure of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Iron (Fe) 4 atoms
Chlorine (Cl) 2 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide (pdb code 4c7y). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total only one binding site of Molybdenum was determined in the Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide, PDB code: 4c7y:

Molybdenum binding site 1 out of 1 in 4c7y

Go back to Molybdenum Binding Sites List in 4c7y
Molybdenum binding site 1 out of 1 in the Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo921

b:15.1
occ:0.70
 MO A:PCD921 0.0 15.1 0.7
OM2 A:PCD921 1.8 21.7 1.0
OM1 A:PCD921 2.0 16.9 1.0
O2 A:PEO922 2.0 20.7 1.0
S7' A:PCD921 2.4 9.3 1.0
O1 A:PEO922 2.5 24.3 0.5
S8' A:PCD921 2.5 10.2 1.0
C7' A:PCD921 3.4 8.3 1.0
C8' A:PCD921 3.4 8.0 1.0
OE2 A:GLU869 3.8 7.8 1.0
CA A:GLY422 3.9 5.9 1.0
CA A:GLY696 4.1 7.8 1.0
CD A:GLU869 4.2 7.2 1.0
O A:HOH2972 4.3 21.6 1.0
N A:GLY697 4.3 8.2 1.0
O A:SER695 4.3 7.7 1.0
N A:ARG533 4.4 7.0 1.0
N A:GLY422 4.5 6.6 1.0
CA A:ARG533 4.5 6.8 1.0
CG A:GLU869 4.7 7.0 1.0
CB A:ALA531 4.7 9.1 1.0
OE1 A:GLU869 4.7 7.8 1.0
C A:GLY696 4.7 8.3 1.0
O A:PHE421 4.8 7.2 1.0
C6' A:PCD921 4.8 7.1 1.0
C A:PHE421 4.8 6.6 1.0
CE1 A:HIS653 4.8 8.4 1.0
C9' A:PCD921 4.9 9.0 1.0

Reference:

J.Marangon, H.D.Correia, C.D.Brondino, J.J.G.Moura, M.J.Romao, P.J.Gonzalez, T.Santos-Silva. Kinetic and Structural Studies of Aldehyde Oxidoreductase From Desulfovibrio Gigas Reveal A Dithiolene-Based Chemistry For Enzyme Activation and Inhibition By H2O2. Plos One V. 8 83234 2013.
ISSN: ISSN 1932-6203
PubMed: 24391748
DOI: 10.1371/JOURNAL.PONE.0083234
Page generated: Sun Oct 6 15:59:21 2024

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