Molybdenum in PDB 4hi1: Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395
Enzymatic activity of Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395
All present enzymatic activity of Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395:
3.6.1.7;
Protein crystallography data
The structure of Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395, PDB code: 4hi1
was solved by
S.Nath,
R.Banerjee,
U.Sen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.71 /
1.96
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
39.710,
81.300,
40.530,
90.00,
90.52,
90.00
|
R / Rfree (%)
|
18.7 /
24.9
|
Molybdenum Binding Sites:
The binding sites of Molybdenum atom in the Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395
(pdb code 4hi1). This binding sites where shown within
5.0 Angstroms radius around Molybdenum atom.
In total 3 binding sites of Molybdenum where determined in the
Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395, PDB code: 4hi1:
Jump to Molybdenum binding site number:
1;
2;
3;
Molybdenum binding site 1 out
of 3 in 4hi1
Go back to
Molybdenum Binding Sites List in 4hi1
Molybdenum binding site 1 out
of 3 in the Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 1 of Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mo101
b:47.0
occ:1.00
|
MO
|
A:MOO101
|
0.0
|
47.0
|
1.0
|
O1
|
A:MOO101
|
2.0
|
33.3
|
1.0
|
O3
|
A:MOO101
|
2.0
|
29.5
|
1.0
|
O2
|
A:MOO101
|
2.0
|
27.4
|
1.0
|
O4
|
A:MOO101
|
2.2
|
58.3
|
1.0
|
O
|
A:HOH201
|
3.6
|
11.3
|
1.0
|
O
|
B:HOH209
|
3.6
|
16.4
|
1.0
|
O
|
A:HOH216
|
3.7
|
21.2
|
1.0
|
CA
|
A:GLY18
|
3.7
|
9.1
|
1.0
|
N
|
A:GLY18
|
3.7
|
11.0
|
1.0
|
O
|
A:HOH220
|
3.8
|
22.0
|
1.0
|
N
|
A:PHE19
|
3.8
|
8.8
|
1.0
|
C
|
A:GLY18
|
3.9
|
9.1
|
1.0
|
N
|
A:ARG20
|
3.9
|
18.6
|
1.0
|
NE
|
A:ARG20
|
3.9
|
13.3
|
1.0
|
CB
|
A:ARG20
|
4.0
|
17.2
|
1.0
|
N
|
A:TYR21
|
4.1
|
6.6
|
1.0
|
NH2
|
A:ARG20
|
4.2
|
16.7
|
1.0
|
CA
|
A:ARG20
|
4.4
|
17.8
|
1.0
|
CZ
|
A:ARG20
|
4.6
|
16.9
|
1.0
|
O
|
A:GLY18
|
4.6
|
10.2
|
1.0
|
CG
|
A:ARG20
|
4.6
|
14.2
|
1.0
|
C
|
A:PHE19
|
4.7
|
18.8
|
1.0
|
C
|
A:ARG20
|
4.7
|
9.4
|
1.0
|
CB
|
A:TYR21
|
4.8
|
10.0
|
1.0
|
N
|
A:VAL17
|
4.8
|
15.9
|
1.0
|
CA
|
A:PHE19
|
4.8
|
12.5
|
1.0
|
CD
|
A:ARG20
|
4.9
|
12.6
|
1.0
|
N
|
A:GLY16
|
5.0
|
16.7
|
1.0
|
C
|
A:VAL17
|
5.0
|
15.7
|
1.0
|
|
Molybdenum binding site 2 out
of 3 in 4hi1
Go back to
Molybdenum Binding Sites List in 4hi1
Molybdenum binding site 2 out
of 3 in the Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 2 of Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mo101
b:44.6
occ:1.00
|
MO
|
B:MOO101
|
0.0
|
44.6
|
1.0
|
O1
|
B:MOO101
|
2.0
|
89.6
|
1.0
|
O3
|
B:MOO101
|
2.0
|
19.3
|
1.0
|
O2
|
B:MOO101
|
2.0
|
31.2
|
1.0
|
O4
|
B:MOO101
|
2.2
|
29.7
|
1.0
|
O
|
B:HOH206
|
3.4
|
15.6
|
1.0
|
O
|
B:HOH202
|
3.5
|
9.6
|
1.0
|
CA
|
B:GLY18
|
3.6
|
14.2
|
1.0
|
O
|
B:HOH204
|
3.6
|
14.7
|
1.0
|
N
|
B:GLY18
|
3.6
|
12.7
|
1.0
|
N
|
B:PHE19
|
3.8
|
12.9
|
1.0
|
NE
|
B:ARG20
|
3.9
|
13.5
|
1.0
|
C
|
B:GLY18
|
3.9
|
13.6
|
1.0
|
NH2
|
B:ARG20
|
3.9
|
13.3
|
1.0
|
N
|
B:ARG20
|
4.0
|
12.6
|
1.0
|
O
|
B:HOH227
|
4.1
|
28.0
|
1.0
|
N
|
B:TYR21
|
4.3
|
10.6
|
1.0
|
CZ
|
B:ARG20
|
4.3
|
17.3
|
1.0
|
CB
|
B:ARG20
|
4.4
|
10.5
|
1.0
|
O
|
B:HOH263
|
4.4
|
30.8
|
1.0
|
CA
|
B:ARG20
|
4.7
|
13.9
|
1.0
|
O
|
B:GLY18
|
4.7
|
13.3
|
1.0
|
N
|
B:VAL17
|
4.8
|
14.2
|
1.0
|
CB
|
B:TYR21
|
4.8
|
12.3
|
1.0
|
O
|
B:HOH212
|
4.8
|
12.9
|
1.0
|
C
|
B:VAL17
|
4.9
|
15.5
|
1.0
|
C
|
B:PHE19
|
4.9
|
10.4
|
1.0
|
CA
|
B:PHE19
|
4.9
|
9.8
|
1.0
|
CG
|
B:ARG20
|
4.9
|
14.2
|
1.0
|
CD
|
B:ARG20
|
5.0
|
13.3
|
1.0
|
|
Molybdenum binding site 3 out
of 3 in 4hi1
Go back to
Molybdenum Binding Sites List in 4hi1
Molybdenum binding site 3 out
of 3 in the Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395
 Mono view
 Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 3 of Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mo101
b:48.4
occ:1.00
|
MO
|
C:MOO101
|
0.0
|
48.4
|
1.0
|
O1
|
C:MOO101
|
2.0
|
24.1
|
1.0
|
O3
|
C:MOO101
|
2.0
|
16.3
|
1.0
|
O2
|
C:MOO101
|
2.0
|
12.5
|
1.0
|
O4
|
C:MOO101
|
2.2
|
60.4
|
1.0
|
O
|
C:HOH215
|
3.4
|
23.9
|
1.0
|
O
|
C:HOH205
|
3.5
|
12.8
|
1.0
|
O
|
C:HOH201
|
3.7
|
8.4
|
1.0
|
CA
|
C:GLY18
|
3.7
|
12.2
|
1.0
|
NE
|
C:ARG20
|
3.7
|
14.9
|
1.0
|
N
|
C:GLY18
|
3.8
|
15.9
|
1.0
|
N
|
C:ARG20
|
4.0
|
13.1
|
1.0
|
N
|
C:PHE19
|
4.0
|
16.4
|
1.0
|
C
|
C:GLY18
|
4.0
|
10.5
|
1.0
|
NH2
|
C:ARG20
|
4.0
|
14.3
|
1.0
|
CB
|
C:ARG20
|
4.2
|
10.9
|
1.0
|
O
|
A:HOH256
|
4.3
|
24.7
|
1.0
|
N
|
C:TYR21
|
4.3
|
13.5
|
1.0
|
CZ
|
C:ARG20
|
4.4
|
18.7
|
1.0
|
CG
|
C:ARG20
|
4.5
|
15.4
|
1.0
|
CA
|
C:ARG20
|
4.6
|
14.3
|
1.0
|
CD
|
C:ARG20
|
4.8
|
11.2
|
1.0
|
O
|
C:GLY18
|
4.8
|
11.1
|
1.0
|
O
|
C:HOH236
|
4.8
|
18.8
|
1.0
|
C
|
C:PHE19
|
4.9
|
16.7
|
1.0
|
N
|
C:VAL17
|
4.9
|
12.1
|
1.0
|
C
|
C:ARG20
|
5.0
|
13.9
|
1.0
|
|
Reference:
S.Nath,
R.Banerjee,
U.Sen.
Crystal Structure of Acylphosphatase C20R Mutant From Vibrio CHOLERAE0395 J.Mol.Biol. 2013.
ISSN: ESSN 1089-8638
Page generated: Sun Oct 6 16:08:33 2024
|