Atomistry » Molybdenum » PDB 4c80-5koj » 4nd8
Atomistry »
  Molybdenum »
    PDB 4c80-5koj »
      4nd8 »

Molybdenum in PDB 4nd8: Av Nitrogenase Mofe Protein High pH Form

Enzymatic activity of Av Nitrogenase Mofe Protein High pH Form

All present enzymatic activity of Av Nitrogenase Mofe Protein High pH Form:
1.18.6.1;

Protein crystallography data

The structure of Av Nitrogenase Mofe Protein High pH Form, PDB code: 4nd8 was solved by K.-Y.Yang, C.A.Haynes, T.Spatzal, D.C.Rees, J.B.Howard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.74 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 76.527, 127.915, 107.082, 90.00, 108.90, 90.00
R / Rfree (%) 15.6 / 20.4

Other elements in 4nd8:

The structure of Av Nitrogenase Mofe Protein High pH Form also contains other interesting chemical elements:

Iron (Fe) 32 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Av Nitrogenase Mofe Protein High pH Form (pdb code 4nd8). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Av Nitrogenase Mofe Protein High pH Form, PDB code: 4nd8:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 4nd8

Go back to Molybdenum Binding Sites List in 4nd8
Molybdenum binding site 1 out of 2 in the Av Nitrogenase Mofe Protein High pH Form


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Av Nitrogenase Mofe Protein High pH Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo502

b:25.0
occ:1.00
MO1 A:ICS502 0.0 25.0 1.0
O7 A:HCA501 2.2 23.9 1.0
S4B A:ICS502 2.3 22.8 1.0
S3B A:ICS502 2.4 23.5 1.0
S1B A:ICS502 2.4 19.1 1.0
O5 A:HCA501 2.4 19.2 1.0
ND1 A:HIS442 2.5 21.1 1.0
FE7 A:ICS502 2.7 21.4 1.0
FE6 A:ICS502 2.7 24.9 1.0
FE5 A:ICS502 2.7 21.0 1.0
C7 A:HCA501 3.1 27.9 1.0
C3 A:HCA501 3.2 25.9 1.0
CE1 A:HIS442 3.4 29.6 1.0
CG A:HIS442 3.5 23.7 1.0
CX A:ICS502 3.6 18.6 1.0
O A:HOH693 3.6 23.1 1.0
CB A:HIS442 3.8 18.7 1.0
O A:HOH807 4.2 28.0 1.0
C4 A:HCA501 4.2 26.3 1.0
C2 A:HCA501 4.2 24.6 1.0
O6 A:HCA501 4.3 27.2 1.0
C5 A:HCA501 4.4 27.1 1.0
NE2 A:HIS442 4.6 22.6 1.0
CA A:HIS442 4.6 22.7 1.0
CD2 A:HIS442 4.6 23.2 1.0
S5A A:ICS502 4.8 22.8 1.0
S2B A:ICS502 4.8 22.3 1.0
O1 A:HCA501 4.9 27.9 1.0
S3A A:ICS502 4.9 23.3 1.0

Molybdenum binding site 2 out of 2 in 4nd8

Go back to Molybdenum Binding Sites List in 4nd8
Molybdenum binding site 2 out of 2 in the Av Nitrogenase Mofe Protein High pH Form


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Av Nitrogenase Mofe Protein High pH Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo502

b:25.1
occ:1.00
MO1 C:ICS502 0.0 25.1 1.0
O7 C:HCA501 2.3 25.5 1.0
S4B C:ICS502 2.3 22.6 1.0
S3B C:ICS502 2.4 25.6 1.0
S1B C:ICS502 2.4 25.4 1.0
O5 C:HCA501 2.4 20.2 1.0
ND1 C:HIS442 2.5 19.4 1.0
FE6 C:ICS502 2.7 23.6 1.0
FE7 C:ICS502 2.7 24.4 1.0
FE5 C:ICS502 2.7 24.6 1.0
C7 C:HCA501 3.1 22.5 1.0
C3 C:HCA501 3.2 28.0 1.0
CE1 C:HIS442 3.4 23.9 1.0
CG C:HIS442 3.5 21.1 1.0
CX C:ICS502 3.6 20.4 1.0
CB C:HIS442 3.8 21.2 1.0
C5 C:HCA501 4.1 22.4 1.0
O C:HOH634 4.1 21.1 1.0
C2 C:HCA501 4.3 26.1 1.0
C4 C:HCA501 4.3 23.9 1.0
O6 C:HCA501 4.3 28.2 1.0
NE2 C:HIS442 4.6 21.2 1.0
CD2 C:HIS442 4.7 23.9 1.0
CA C:HIS442 4.7 18.5 1.0
S5A C:ICS502 4.7 19.8 1.0
S2B C:ICS502 4.8 21.6 1.0
O1 C:HCA501 4.8 31.4 1.0
S3A C:ICS502 4.9 22.9 1.0

Reference:

K.Y.Yang, C.A.Haynes, T.Spatzal, D.C.Rees, J.B.Howard. Turnover-Dependent Inactivation of the Nitrogenase Mofe-Protein at High pH. Biochemistry V. 53 333 2014.
ISSN: ISSN 0006-2960
PubMed: 24392967
DOI: 10.1021/BI4014769
Page generated: Tue Dec 15 05:18:59 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy