Atomistry » Molybdenum » PDB 4c80-5koj » 4tku
Atomistry »
  Molybdenum »
    PDB 4c80-5koj »
      4tku »

Molybdenum in PDB 4tku: Reactivated Nitrogenase Mofe-Protein From A. Vinelandii

Enzymatic activity of Reactivated Nitrogenase Mofe-Protein From A. Vinelandii

All present enzymatic activity of Reactivated Nitrogenase Mofe-Protein From A. Vinelandii:
1.18.6.1;

Protein crystallography data

The structure of Reactivated Nitrogenase Mofe-Protein From A. Vinelandii, PDB code: 4tku was solved by T.Spatzal, K.Perez, O.Einsle, J.B.Howard, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.65 / 1.43
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.941, 130.785, 107.005, 90.00, 110.58, 90.00
R / Rfree (%) 13.2 / 14.2

Other elements in 4tku:

The structure of Reactivated Nitrogenase Mofe-Protein From A. Vinelandii also contains other interesting chemical elements:

Iron (Fe) 32 atoms
Chlorine (Cl) 2 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Reactivated Nitrogenase Mofe-Protein From A. Vinelandii (pdb code 4tku). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Reactivated Nitrogenase Mofe-Protein From A. Vinelandii, PDB code: 4tku:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 4tku

Go back to Molybdenum Binding Sites List in 4tku
Molybdenum binding site 1 out of 2 in the Reactivated Nitrogenase Mofe-Protein From A. Vinelandii


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Reactivated Nitrogenase Mofe-Protein From A. Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo502

b:8.1
occ:1.00
MO1 A:ICS502 0.0 8.1 1.0
O5 A:HCA501 2.2 8.0 1.0
O7 A:HCA501 2.2 7.7 1.0
S4B A:ICS502 2.3 8.2 1.0
S1B A:ICS502 2.3 8.4 1.0
S3B A:ICS502 2.4 8.1 1.0
ND1 A:HIS442 2.4 7.8 1.0
FE6 A:ICS502 2.7 8.2 1.0
FE7 A:ICS502 2.7 8.1 1.0
FE5 A:ICS502 2.7 8.5 1.0
C7 A:HCA501 3.1 7.5 1.0
C3 A:HCA501 3.2 7.3 1.0
CE1 A:HIS442 3.2 8.3 1.0
CG A:HIS442 3.4 7.7 1.0
CX A:ICS502 3.5 8.3 1.0
CB A:HIS442 3.8 7.6 1.0
C2 A:HCA501 4.1 6.9 1.0
O A:HOH643 4.2 10.6 1.0
C5 A:HCA501 4.2 8.4 1.0
O6 A:HCA501 4.2 8.2 1.0
C4 A:HCA501 4.3 8.5 1.0
O1 A:HCA501 4.3 10.0 1.0
NE2 A:HIS442 4.4 7.7 1.0
CD2 A:HIS442 4.5 7.2 1.0
CA A:HIS442 4.6 7.3 1.0
S2B A:ICS502 4.8 8.8 1.0
C1 A:HCA501 4.8 8.6 1.0
S5A A:ICS502 4.8 8.6 1.0
S3A A:ICS502 4.9 8.8 1.0

Molybdenum binding site 2 out of 2 in 4tku

Go back to Molybdenum Binding Sites List in 4tku
Molybdenum binding site 2 out of 2 in the Reactivated Nitrogenase Mofe-Protein From A. Vinelandii


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Reactivated Nitrogenase Mofe-Protein From A. Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo502

b:8.2
occ:1.00
MO1 C:ICS502 0.0 8.2 1.0
O5 C:HCA501 2.2 7.0 1.0
O7 C:HCA501 2.2 7.4 1.0
S4B C:ICS502 2.3 8.4 1.0
S1B C:ICS502 2.3 8.3 1.0
S3B C:ICS502 2.4 8.4 1.0
ND1 C:HIS442 2.4 8.3 1.0
FE6 C:ICS502 2.7 8.3 1.0
FE7 C:ICS502 2.7 8.2 1.0
FE5 C:ICS502 2.7 8.5 1.0
C7 C:HCA501 3.0 7.2 1.0
C3 C:HCA501 3.2 7.4 1.0
CE1 C:HIS442 3.3 8.1 1.0
CG C:HIS442 3.4 7.4 1.0
CX C:ICS502 3.5 8.1 1.0
CB C:HIS442 3.7 8.0 1.0
C2 C:HCA501 4.2 7.5 1.0
O C:HOH645 4.2 9.8 1.0
O6 C:HCA501 4.2 8.5 1.0
C5 C:HCA501 4.3 7.3 1.0
C4 C:HCA501 4.3 8.2 1.0
O1 C:HCA501 4.4 9.7 1.0
NE2 C:HIS442 4.4 7.8 1.0
CD2 C:HIS442 4.5 8.0 1.0
CA C:HIS442 4.6 7.8 1.0
S2B C:ICS502 4.7 8.3 1.0
S5A C:ICS502 4.8 8.5 1.0
C1 C:HCA501 4.8 8.9 1.0
S3A C:ICS502 4.9 8.8 1.0

Reference:

T.Spatzal, K.A.Perez, O.Einsle, J.B.Howard, D.C.Rees. Ligand Binding to the Femo-Cofactor: Structures of Co-Bound and Reactivated Nitrogenase. Science V. 345 1620 2014.
ISSN: ESSN 1095-9203
PubMed: 25258081
DOI: 10.1126/SCIENCE.1256679
Page generated: Tue Dec 15 05:19:10 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy