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Molybdenum in PDB 4wes: Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution

Enzymatic activity of Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution

All present enzymatic activity of Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution:
1.18.6.1;

Protein crystallography data

The structure of Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution, PDB code: 4wes was solved by L.M.Zhang, C.N.Morrison, J.T.Kaiser, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.93 / 1.08
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.701, 170.581, 87.540, 90.00, 91.63, 90.00
R / Rfree (%) 11 / 13.3

Other elements in 4wes:

The structure of Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution also contains other interesting chemical elements:

Iron (Fe) 36 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution (pdb code 4wes). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution, PDB code: 4wes:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 4wes

Go back to Molybdenum Binding Sites List in 4wes
Molybdenum binding site 1 out of 2 in the Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo602

b:7.5
occ:1.00
MO1 A:ICS602 0.0 7.5 1.0
O7 A:HCA601 2.2 7.5 1.0
O5 A:HCA601 2.2 7.3 1.0
ND1 A:HIS482 2.3 7.7 1.0
S1B A:ICS602 2.3 7.9 1.0
S4B A:ICS602 2.3 7.8 1.0
S3B A:ICS602 2.4 7.6 1.0
FE7 A:ICS602 2.7 7.7 1.0
FE6 A:ICS602 2.7 7.8 1.0
FE5 A:ICS602 2.7 7.8 1.0
C7 A:HCA601 3.0 7.6 1.0
C3 A:HCA601 3.1 7.4 1.0
CE1 A:HIS482 3.2 7.9 1.0
CG A:HIS482 3.4 7.8 1.0
CX A:ICS602 3.5 8.3 1.0
CB A:HIS482 3.7 8.0 1.0
C2 A:HCA601 4.1 8.1 1.0
C5 A:HCA601 4.2 8.3 1.0
O A:HOH784 4.2 9.5 1.0
O6 A:HCA601 4.2 8.1 1.0
C4 A:HCA601 4.2 7.4 1.0
O1 A:HCA601 4.3 10.1 1.0
NE2 A:HIS482 4.4 8.5 1.0
CD2 A:HIS482 4.5 8.5 1.0
CA A:HIS482 4.6 7.8 1.0
C1 A:HCA601 4.7 9.7 1.0
S2B A:ICS602 4.8 8.2 1.0
S5A A:ICS602 4.8 8.4 1.0
S3A A:ICS602 4.9 8.4 1.0

Molybdenum binding site 2 out of 2 in 4wes

Go back to Molybdenum Binding Sites List in 4wes
Molybdenum binding site 2 out of 2 in the Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Nitrogenase Molybdenum-Iron Protein From Clostridium Pasteurianum at 1.08 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo602

b:8.6
occ:1.00
MO1 C:ICS602 0.0 8.6 1.0
O7 C:HCA601 2.2 8.8 1.0
O6 C:HCA601 2.2 8.5 1.0
S4B C:ICS602 2.4 9.2 1.0
S1B C:ICS602 2.4 9.2 1.0
ND1 C:HIS482 2.4 9.6 1.0
S3B C:ICS602 2.4 8.9 1.0
FE7 C:ICS602 2.7 8.9 1.0
FE6 C:ICS602 2.7 8.9 1.0
FE5 C:ICS602 2.7 9.1 1.0
C7 C:HCA601 3.0 8.0 1.0
C3 C:HCA601 3.1 8.2 1.0
CE1 C:HIS482 3.3 9.4 1.0
CG C:HIS482 3.4 8.8 1.0
CX C:ICS602 3.5 10.1 1.0
CB C:HIS482 3.7 8.7 1.0
C2 C:HCA601 4.1 8.4 1.0
O C:HOH754 4.1 10.6 1.0
C5 C:HCA601 4.2 8.8 1.0
O5 C:HCA601 4.2 8.4 1.0
C4 C:HCA601 4.2 8.3 1.0
O2 C:HCA601 4.3 11.0 1.0
NE2 C:HIS482 4.4 10.0 1.0
CD2 C:HIS482 4.5 9.3 1.0
CA C:HIS482 4.6 8.9 1.0
C1 C:HCA601 4.7 10.0 1.0
S2B C:ICS602 4.8 9.4 1.0
S5A C:ICS602 4.8 9.8 1.0
S3A C:ICS602 4.9 9.9 1.0

Reference:

L.-M.Zhang, C.N.Morrison, J.T.Kaiser, D.C.Rees. Nitrogenase Mofe Protein From Clostridium Pasteurianum at 1.08 A Resolution: Comparison with the Azotobacter Vinelandii Mofe Protein Acta Crystallogr.,Sect.D V. 71 274 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004714025243
Page generated: Tue Dec 15 05:19:19 2020

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