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Molybdenum in PDB 4wzb: Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex

Enzymatic activity of Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex

All present enzymatic activity of Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex:
1.18.6.1;

Protein crystallography data

The structure of Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex, PDB code: 4wzb was solved by F.A.Tezcan, J.T.Kaiser, D.Mustafi, M.Y.Walton, J.B.Howard, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.38 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.533, 120.894, 264.834, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 25.5

Other elements in 4wzb:

The structure of Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Iron (Fe) 40 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex (pdb code 4wzb). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex, PDB code: 4wzb:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 4wzb

Go back to Molybdenum Binding Sites List in 4wzb
Molybdenum binding site 1 out of 2 in the Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo1496

b:26.3
occ:1.00
MO1 A:ICS1496 0.0 26.3 1.0
O5 A:HCA1494 1.9 21.7 1.0
S1B A:ICS1496 2.3 24.9 1.0
S3B A:ICS1496 2.4 24.4 1.0
S4B A:ICS1496 2.4 23.3 1.0
ND1 A:HIS442 2.4 25.3 1.0
O7 A:HCA1494 2.5 20.6 1.0
FE6 A:ICS1496 2.7 24.1 1.0
FE7 A:ICS1496 2.7 22.4 1.0
FE5 A:ICS1496 2.7 23.7 1.0
C7 A:HCA1494 2.9 22.9 1.0
C3 A:HCA1494 3.2 21.0 1.0
CE1 A:HIS442 3.4 25.5 1.0
CG A:HIS442 3.4 25.1 1.0
CX A:ICS1496 3.6 22.0 1.0
CB A:HIS442 3.7 22.8 1.0
O6 A:HCA1494 4.0 20.8 1.0
C2 A:HCA1494 4.1 20.8 1.0
C4 A:HCA1494 4.4 21.8 1.0
O2 A:HCA1494 4.5 20.9 1.0
NE2 A:HIS442 4.5 24.0 1.0
CA A:HIS442 4.5 24.6 1.0
CD2 A:HIS442 4.6 23.9 1.0
C5 A:HCA1494 4.7 21.3 1.0
S2B A:ICS1496 4.7 20.9 1.0
C1 A:HCA1494 4.8 23.1 1.0
S5A A:ICS1496 4.8 25.6 1.0
S3A A:ICS1496 4.9 24.1 1.0

Molybdenum binding site 2 out of 2 in 4wzb

Go back to Molybdenum Binding Sites List in 4wzb
Molybdenum binding site 2 out of 2 in the Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of Mgamppcp-Bound AV2-AV1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo1496

b:22.1
occ:1.00
MO1 C:ICS1496 0.0 22.1 1.0
O5 C:HCA1494 1.9 16.5 1.0
S4B C:ICS1496 2.3 19.1 1.0
S1B C:ICS1496 2.3 18.6 1.0
S3B C:ICS1496 2.4 18.9 1.0
ND1 C:HIS442 2.5 18.9 1.0
O7 C:HCA1494 2.5 15.9 1.0
FE6 C:ICS1496 2.7 18.1 1.0
FE7 C:ICS1496 2.7 18.7 1.0
FE5 C:ICS1496 2.7 19.4 1.0
C7 C:HCA1494 2.9 18.1 1.0
C3 C:HCA1494 3.3 16.8 1.0
CE1 C:HIS442 3.5 19.5 1.0
CG C:HIS442 3.5 18.8 1.0
CX C:ICS1496 3.6 17.8 1.0
CB C:HIS442 3.7 18.8 1.0
O6 C:HCA1494 4.1 18.0 1.0
C5 C:HCA1494 4.2 17.0 1.0
C2 C:HCA1494 4.2 17.7 1.0
C4 C:HCA1494 4.4 17.1 1.0
O2 C:HCA1494 4.4 18.5 1.0
CA C:HIS442 4.6 20.2 1.0
NE2 C:HIS442 4.6 23.0 1.0
CD2 C:HIS442 4.6 22.1 1.0
S2B C:ICS1496 4.8 22.0 1.0
C1 C:HCA1494 4.8 18.9 1.0
S5A C:ICS1496 4.8 16.0 1.0
S3A C:ICS1496 4.9 20.4 1.0
O C:HOH1543 4.9 17.2 1.0

Reference:

F.A.Tezcan, J.T.Kaiser, D.Mustafi, M.Y.Walton, J.B.Howard, D.C.Rees. Nitrogenase Complexes: Multiple Docking Sites For A Nucleotide Switch Protein. Science V. 309 1377 2005.
ISSN: ESSN 1095-9203
PubMed: 16123301
DOI: 10.1126/SCIENCE.1115653
Page generated: Tue Dec 15 05:19:24 2020

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