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Molybdenum in PDB 4zoh: Crystal Structure of Glyceraldehyde Oxidoreductase

Protein crystallography data

The structure of Crystal Structure of Glyceraldehyde Oxidoreductase, PDB code: 4zoh was solved by H.Nishimasu, S.Fushinobu, T.Wakagi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.40 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.431, 143.431, 235.509, 90.00, 90.00, 120.00
R / Rfree (%) 17.7 / 24.2

Other elements in 4zoh:

The structure of Crystal Structure of Glyceraldehyde Oxidoreductase also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystal Structure of Glyceraldehyde Oxidoreductase (pdb code 4zoh). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total only one binding site of Molybdenum was determined in the Crystal Structure of Glyceraldehyde Oxidoreductase, PDB code: 4zoh:

Molybdenum binding site 1 out of 1 in 4zoh

Go back to Molybdenum Binding Sites List in 4zoh
Molybdenum binding site 1 out of 1 in the Crystal Structure of Glyceraldehyde Oxidoreductase


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of Glyceraldehyde Oxidoreductase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo802

b:29.9
occ:1.00
O A:HOH1148 1.8 24.0 1.0
O A:HOH1219 1.9 19.6 1.0
O A:HOH913 2.4 45.0 1.0
S7' A:MCN801 2.5 25.0 1.0
S8' A:MCN801 2.5 25.5 1.0
OE2 A:GLU672 3.3 26.3 1.0
C7' A:MCN801 3.4 22.7 1.0
C8' A:MCN801 3.5 22.3 1.0
CA A:GLY216 3.9 22.8 1.0
CD A:GLU672 3.9 23.8 1.0
N A:GLY216 4.2 22.0 1.0
O A:HOH1192 4.2 29.0 1.0
N A:GLY483 4.2 22.4 1.0
CA A:TRP482 4.2 21.1 1.0
O A:HOH1121 4.2 22.2 1.0
CB A:TRP482 4.2 20.8 1.0
C A:PHE215 4.5 21.0 1.0
OE1 A:GLU672 4.5 22.4 1.0
CA A:ARG332 4.6 19.0 1.0
CD1 A:ILE219 4.6 21.8 1.0
CG A:GLU672 4.6 23.7 1.0
N A:ARG332 4.6 21.5 1.0
NE2 A:GLN186 4.7 15.3 1.0
C A:TRP482 4.7 21.2 1.0
C6' A:MCN801 4.8 23.8 1.0
O A:PHE215 4.8 20.5 1.0
N A:GLY333 4.9 22.0 1.0
C9' A:MCN801 4.9 20.1 1.0

Reference:

T.Wakagi, H.Nishimasu, M.Miyake, S.Fushinobu. Archaeal Mo-Containing Glyceraldehyde Oxidoreductase Isozymes Exhibit Diverse Substrate Specificities Through Unique Subunit Assemblies. Plos One V. 11 47333.
ISSN: ESSN 1932-6203
PubMed: 26808202
DOI: 10.1371/JOURNAL.PONE.0147333
Page generated: Tue Dec 15 05:19:30 2020

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