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Molybdenum in PDB 5nqd: Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A

Enzymatic activity of Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A

All present enzymatic activity of Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A:
1.20.98.1;

Protein crystallography data

The structure of Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A, PDB code: 5nqd was solved by T.Santos-Silva, M.Romao, M.Vieira, A.T.Marques, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.55 / 2.20
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 141.408, 148.665, 232.009, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 21.7

Other elements in 5nqd:

The structure of Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A also contains other interesting chemical elements:

Iron (Fe) 20 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A (pdb code 5nqd). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 4 binding sites of Molybdenum where determined in the Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A, PDB code: 5nqd:
Jump to Molybdenum binding site number: 1; 2; 3; 4;

Molybdenum binding site 1 out of 4 in 5nqd

Go back to Molybdenum Binding Sites List in 5nqd
Molybdenum binding site 1 out of 4 in the Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo2004

b:18.1
occ:1.00
 O A:O2003 1.6 17.3 1.0
S12 A:MGD2002 2.3 19.3 1.0
S13 A:MGD2002 2.3 14.9 1.0
S13 A:MGD2001 2.4 15.4 1.0
S12 A:MGD2001 2.4 18.0 1.0
C13 A:MGD2002 3.3 16.6 1.0
C13 A:MGD2001 3.3 15.4 1.0
C12 A:MGD2002 3.3 16.5 1.0
C12 A:MGD2001 3.3 15.7 1.0
NZ A:LYS413 3.7 19.5 1.0
NH2 A:ARG720 3.8 17.3 1.0
ND2 A:ASN200 4.0 15.5 1.0
O A:HOH2361 4.1 18.1 1.0
ND1 A:HIS451 4.3 21.8 1.0
CA A:GLY450 4.3 19.4 1.0
C14 A:MGD2002 4.7 16.6 1.0
CE A:LYS413 4.7 18.7 1.0
C14 A:MGD2001 4.8 14.5 1.0
CZ A:ARG720 4.8 17.9 1.0
N A:HIS451 4.8 19.3 1.0
CE1 A:HIS451 4.8 21.8 1.0
CB A:ASN200 4.8 14.0 1.0
C11 A:MGD2002 4.8 16.3 1.0
NE2 A:HIS199 4.8 16.7 1.0
C11 A:MGD2001 4.8 15.2 1.0
CG A:ASN200 4.9 15.5 1.0
NE2 A:GLN726 5.0 19.2 1.0
C A:GLY450 5.0 18.6 1.0

Molybdenum binding site 2 out of 4 in 5nqd

Go back to Molybdenum Binding Sites List in 5nqd
Molybdenum binding site 2 out of 4 in the Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo2004

b:23.1
occ:1.00
 O C:O2003 1.6 22.6 1.0
S13 C:MGD2002 2.3 24.1 1.0
S13 C:MGD2001 2.3 20.3 1.0
S12 C:MGD2002 2.4 21.2 1.0
S12 C:MGD2001 2.5 17.3 1.0
C13 C:MGD2002 3.2 21.1 1.0
C13 C:MGD2001 3.3 19.4 1.0
C12 C:MGD2002 3.3 20.2 1.0
C12 C:MGD2001 3.4 18.6 1.0
NZ C:LYS413 3.6 24.6 1.0
NH2 C:ARG720 3.9 23.9 1.0
ND2 C:ASN200 3.9 20.3 1.0
ND1 C:HIS451 4.3 22.6 1.0
CA C:GLY450 4.5 22.4 1.0
O C:HOH2336 4.5 39.3 1.0
CE1 C:HIS451 4.6 22.9 1.0
C14 C:MGD2002 4.7 22.1 1.0
C14 C:MGD2001 4.7 18.0 1.0
C11 C:MGD2002 4.8 20.3 1.0
CE C:LYS413 4.8 24.4 1.0
NE2 C:HIS199 4.8 20.2 1.0
N C:HIS451 4.8 19.4 1.0
CZ C:ARG720 4.8 23.5 1.0
CB C:ASN200 4.8 19.4 1.0
NE2 C:GLN726 4.9 27.5 1.0
C11 C:MGD2001 4.9 19.3 1.0
CG C:ASN200 4.9 20.1 1.0
OE1 C:GLN726 4.9 23.2 1.0

Molybdenum binding site 3 out of 4 in 5nqd

Go back to Molybdenum Binding Sites List in 5nqd
Molybdenum binding site 3 out of 4 in the Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mo2004

b:23.4
occ:1.00
 O E:O2003 1.8 32.5 1.0
S13 E:MGD2001 2.3 20.3 1.0
S12 E:MGD2002 2.4 21.3 1.0
S13 E:MGD2002 2.4 22.9 1.0
S12 E:MGD2001 2.5 22.2 1.0
C13 E:MGD2001 3.3 20.2 1.0
C13 E:MGD2002 3.3 20.2 1.0
C12 E:MGD2002 3.4 19.2 1.0
C12 E:MGD2001 3.4 19.6 1.0
NH2 E:ARG720 3.7 24.6 1.0
ND2 E:ASN200 3.9 18.2 1.0
NZ E:LYS413 3.9 24.6 1.0
ND1 E:HIS451 4.3 22.7 1.0
CA E:GLY450 4.4 23.1 1.0
CE1 E:HIS451 4.7 23.1 1.0
CZ E:ARG720 4.7 23.2 1.0
C14 E:MGD2001 4.8 17.8 1.0
NE2 E:HIS199 4.8 17.2 1.0
C14 E:MGD2002 4.8 21.0 1.0
C11 E:MGD2002 4.8 18.3 1.0
N E:HIS451 4.8 22.5 1.0
CB E:ASN200 4.8 17.4 1.0
CG E:ASN200 4.8 17.5 1.0
C11 E:MGD2001 4.9 18.3 1.0
OE1 E:GLN726 4.9 23.1 1.0
CD E:LYS413 5.0 25.2 1.0
C E:GLY450 5.0 22.5 1.0
CE E:LYS413 5.0 26.7 1.0

Molybdenum binding site 4 out of 4 in 5nqd

Go back to Molybdenum Binding Sites List in 5nqd
Molybdenum binding site 4 out of 4 in the Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mo2004

b:22.2
occ:1.00
 O G:O2003 1.4 23.3 1.0
S13 G:MGD2001 2.4 18.7 1.0
S12 G:MGD2002 2.4 18.5 1.0
S13 G:MGD2002 2.4 18.1 1.0
S12 G:MGD2001 2.4 20.4 1.0
C13 G:MGD2002 3.3 18.4 1.0
C13 G:MGD2001 3.3 19.0 1.0
C12 G:MGD2002 3.3 17.2 1.0
C12 G:MGD2001 3.3 19.9 1.0
NZ G:LYS413 3.5 20.2 1.0
NH2 G:ARG720 3.8 20.1 1.0
ND2 G:ASN200 4.0 17.2 1.0
CA G:GLY450 4.4 18.8 1.0
ND1 G:HIS451 4.5 22.7 1.0
C14 G:MGD2002 4.7 18.8 1.0
C11 G:MGD2002 4.7 16.1 1.0
C14 G:MGD2001 4.8 18.2 1.0
CZ G:ARG720 4.8 20.7 1.0
C11 G:MGD2001 4.8 19.1 1.0
CE G:LYS413 4.8 20.6 1.0
N G:HIS451 4.8 19.7 1.0
OE1 G:GLN726 4.9 16.9 1.0
CB G:ASN200 4.9 16.9 1.0
NE2 G:HIS199 4.9 17.4 1.0
CE1 G:HIS451 4.9 24.1 1.0
NE2 G:GLN726 5.0 16.6 1.0
C G:GLY450 5.0 19.7 1.0
CG G:ASN200 5.0 18.0 1.0

Reference:

T.Santos-Silva, M.Romao, M.Vieira, A.T.Marques. Arsenite Oxidase Aioab From Rhizobium Sp. Str. Nt-26 Mutant AIOBF108A To Be Published.
Page generated: Sun Oct 6 16:28:39 2024

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