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Molybdenum in PDB 5o5w: Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography

Protein crystallography data

The structure of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography, PDB code: 5o5w was solved by B.Steffen, T.Weinert, U.Ermler, J.Standfuss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.20 / 1.70
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 117.350, 117.350, 233.350, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 20.1

Other elements in 5o5w:

The structure of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Molybdenum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 39;

Binding sites:

The binding sites of Molybdenum atom in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography (pdb code 5o5w). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 39 binding sites of Molybdenum where determined in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography, PDB code: 5o5w:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 39 in 5o5w

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Molybdenum binding site 1 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:35.0
occ:0.84
 MO1 A:8M0303 0.0 35.0 0.8
O1 A:8M0303 1.9 33.9 0.8
O2 A:8M0303 1.9 35.8 0.8
O24 A:8M0303 2.0 31.0 0.8
O3 A:8M0303 2.0 32.4 0.8
O5 A:8M0303 2.1 34.0 0.8
O4 A:8M0303 2.2 32.1 0.8
MO3 A:8M0303 3.2 35.7 0.8
MO2 A:8M0303 3.3 33.9 0.8
O26 A:8M0303 3.4 35.5 0.8
MO4 A:8M0303 3.5 33.7 0.8
O7 A:8M0303 3.7 34.1 0.8
O27 A:8M0303 3.9 38.8 0.8
O6 A:8M0303 3.9 38.0 0.8
OH A:TYR127 4.0 32.7 1.0
NE2 A:GLN111 4.0 38.5 1.0
MO8 A:8M0303 4.1 39.3 0.8
CA A:GLY110 4.1 30.3 1.0
O25 A:8M0303 4.4 37.7 0.8
O22 A:8M0303 4.6 36.7 0.8
O20 A:8M0303 4.6 38.9 0.8
CE1 A:HIS114 4.6 34.0 1.0
C A:GLY110 4.7 34.8 1.0
O9 A:8M0303 4.7 33.7 0.8
O11 A:8M0303 4.8 32.8 0.8
O8 A:8M0303 4.8 30.9 0.8
CZ A:TYR127 4.8 36.7 1.0
O A:SER107 4.8 33.2 1.0
OE1 A:GLU129 4.9 39.9 1.0
CA A:SER107 4.9 30.2 0.5
CA A:SER107 4.9 29.9 0.5

Molybdenum binding site 2 out of 39 in 5o5w

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Molybdenum binding site 2 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:33.9
occ:0.84
 MO2 A:8M0303 0.0 33.9 0.8
O6 A:8M0303 1.9 38.0 0.8
O8 A:8M0303 1.9 30.9 0.8
O5 A:8M0303 1.9 34.0 0.8
O24 A:8M0303 2.0 31.0 0.8
O7 A:8M0303 2.1 34.1 0.8
O25 A:8M0303 2.1 37.7 0.8
MO1 A:8M0303 3.3 35.0 0.8
MO8 A:8M0303 3.3 39.3 0.8
MO4 A:8M0303 3.4 33.7 0.8
O22 A:8M0303 3.5 36.7 0.8
O A:ALA106 3.7 35.8 1.0
MO5 A:8M0303 3.8 39.9 0.8
O2 A:8M0303 3.8 35.8 0.8
O4 A:8M0303 3.9 32.1 0.8
C A:ALA106 3.9 34.0 1.0
O11 A:8M0303 4.0 32.8 0.8
O15 A:8M0303 4.0 35.6 0.8
O13 A:8M0303 4.1 36.3 0.8
CB A:ALA106 4.1 30.8 1.0
OG A:SER150 4.2 35.9 1.0
O16 A:8M0303 4.2 37.3 0.8
N A:SER107 4.3 30.1 1.0
CE1 A:HIS130 4.3 33.6 1.0
CB A:SER150 4.4 30.9 1.0
CA A:SER107 4.4 30.2 0.5
CA A:SER107 4.4 29.9 0.5
O26 A:8M0303 4.5 35.5 0.8
O14 A:8M0303 4.5 33.7 0.8
O1 A:8M0303 4.6 33.9 0.8
CA A:ALA106 4.7 30.4 1.0
ND1 A:HIS130 4.7 33.5 1.0
CA A:GLY110 4.7 30.3 1.0
O3 A:8M0303 4.7 32.4 0.8
OH A:TYR127 4.8 32.7 1.0
N A:GLY110 4.8 31.3 1.0
O12 A:8M0303 4.9 35.2 0.8

Molybdenum binding site 3 out of 39 in 5o5w

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Molybdenum binding site 3 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:35.7
occ:0.84
 MO3 A:8M0303 0.0 35.7 0.8
O9 A:8M0303 1.9 33.7 0.8
O27 A:8M0303 1.9 38.8 0.8
O3 A:8M0303 2.0 32.4 0.8
O4 A:8M0303 2.1 32.1 0.8
OE1 A:GLU129 2.1 39.9 1.0
O26 A:8M0303 2.2 35.5 0.8
CD A:GLU129 3.1 54.9 1.0
MO1 A:8M0303 3.2 35.0 0.8
OE2 A:GLU129 3.4 57.0 1.0
MO4 A:8M0303 3.4 33.7 0.8
O1 A:8M0303 3.7 33.9 0.8
O5 A:8M0303 3.8 34.0 0.8
MO6 A:8M0303 3.9 33.6 0.8
O20 A:8M0303 4.0 38.9 0.8
O12 A:8M0303 4.2 35.2 0.8
O18 A:8M0303 4.2 32.9 0.8
CE2 A:TYR127 4.3 31.6 1.0
CG A:GLU129 4.4 35.0 1.0
O11 A:8M0303 4.5 32.8 0.8
CE1 A:HIS114 4.6 34.0 1.0
O2 A:8M0303 4.6 35.8 0.8
OH A:TYR127 4.7 32.7 1.0
O19 A:8M0303 4.7 35.4 0.8
O24 A:8M0303 4.8 31.0 0.8
CB A:GLU129 4.8 31.0 1.0
MO8 A:8M0303 4.9 39.3 0.8
CZ A:TYR127 4.9 36.7 1.0
NE2 A:HIS114 5.0 34.1 1.0
O7 A:8M0303 5.0 34.1 0.8

Molybdenum binding site 4 out of 39 in 5o5w

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Molybdenum binding site 4 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:33.7
occ:0.84
 MO4 A:8M0303 0.0 33.7 0.8
O12 A:8M0303 1.8 35.2 0.8
O4 A:8M0303 2.0 32.1 0.8
O7 A:8M0303 2.0 34.1 0.8
O26 A:8M0303 2.1 35.5 0.8
O11 A:8M0303 2.2 32.8 0.8
O5 A:8M0303 2.3 34.0 0.8
O25 A:8M0303 3.1 37.7 0.8
MO6 A:8M0303 3.3 33.6 0.8
MO2 A:8M0303 3.4 33.9 0.8
MO3 A:8M0303 3.4 35.7 0.8
MO8 A:8M0303 3.4 39.3 0.8
MO1 A:8M0303 3.5 35.0 0.8
OE1 A:GLU129 3.5 39.9 1.0
O24 A:8M0303 3.6 31.0 0.8
O20 A:8M0303 3.8 38.9 0.8
O3 A:8M0303 3.8 32.4 0.8
OH A:TYR127 3.9 32.7 1.0
O19 A:8M0303 4.0 35.4 0.8
ND1 A:HIS130 4.0 33.5 1.0
MO7 A:8M0303 4.2 38.0 0.8
N A:HIS130 4.3 28.1 1.0
O16 A:8M0303 4.3 37.3 0.8
O14 A:8M0303 4.3 33.7 0.8
CG A:HIS130 4.4 32.6 1.0
O8 A:8M0303 4.4 30.9 0.8
CE1 A:HIS130 4.4 33.6 1.0
O A:HOH427 4.5 33.1 1.0
O17 A:8M0303 4.5 35.4 0.8
O1 A:8M0303 4.6 33.9 0.8
O21 A:8M0303 4.6 37.7 0.8
CA A:GLU129 4.7 28.9 1.0
CB A:HIS130 4.7 29.4 1.0
O27 A:8M0303 4.7 38.8 0.8
CB A:GLU129 4.7 31.0 1.0
CD A:GLU129 4.8 54.9 1.0
CZ A:TYR127 4.8 36.7 1.0
CE2 A:TYR127 4.9 31.6 1.0
O18 A:8M0303 4.9 32.9 0.8
O9 A:8M0303 4.9 33.7 0.8
MO5 A:8M0303 5.0 39.9 0.8
CD2 A:HIS130 5.0 35.4 1.0
O6 A:8M0303 5.0 38.0 0.8
NE2 A:HIS130 5.0 34.9 1.0

Molybdenum binding site 5 out of 39 in 5o5w

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Molybdenum binding site 5 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:39.9
occ:0.84
 MO5 A:8M0303 0.0 39.9 0.8
O13 A:8M0303 1.9 36.3 0.8
O15 A:8M0303 1.9 35.6 0.8
O14 A:8M0303 2.0 33.7 0.8
O25 A:8M0303 2.1 37.7 0.8
NE2 A:HIS156 2.1 46.7 1.0
O16 A:8M0303 2.2 37.3 0.8
CE1 A:HIS156 3.0 46.6 1.0
CD2 A:HIS156 3.1 47.0 1.0
MO7 A:8M0303 3.4 38.0 0.8
MO8 A:8M0303 3.4 39.3 0.8
O22 A:8M0303 3.6 36.7 0.8
O11 A:8M0303 3.7 32.8 0.8
MO2 A:8M0303 3.8 33.9 0.8
ND1 A:HIS130 3.9 33.5 1.0
O6 A:8M0303 4.0 38.0 0.8
O8 A:8M0303 4.1 30.9 0.8
CE1 A:HIS130 4.2 33.6 1.0
O23 A:8M0303 4.2 38.6 0.8
ND1 A:HIS156 4.2 47.7 1.0
CG A:HIS156 4.2 44.5 1.0
O7 A:8M0303 4.3 34.1 0.8
CA A:PRO154 4.3 33.8 1.0
CB A:PRO154 4.3 35.6 1.0
O5 A:8M0303 4.5 34.0 0.8
CB A:ALA106 4.5 30.8 1.0
O21 A:8M0303 4.8 37.7 0.8
MO4 A:8M0303 5.0 33.7 0.8
O17 A:8M0303 5.0 35.4 0.8

Molybdenum binding site 6 out of 39 in 5o5w

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Molybdenum binding site 6 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:33.6
occ:0.84
 MO6 A:8M0303 0.0 33.6 0.8
O18 A:8M0303 1.8 32.9 0.8
O19 A:8M0303 1.9 35.4 0.8
O17 A:8M0303 2.0 35.4 0.8
O26 A:8M0303 2.1 35.5 0.8
O11 A:8M0303 2.2 32.8 0.8
O20 A:8M0303 2.2 38.9 0.8
MO7 A:8M0303 3.3 38.0 0.8
MO4 A:8M0303 3.3 33.7 0.8
MO8 A:8M0303 3.5 39.3 0.8
O12 A:8M0303 3.7 35.2 0.8
O21 A:8M0303 3.8 37.7 0.8
MO3 A:8M0303 3.9 35.7 0.8
O16 A:8M0303 3.9 37.3 0.8
OE1 A:GLU129 4.0 39.9 1.0
O9 A:8M0303 4.0 33.7 0.8
O4 A:8M0303 4.3 32.1 0.8
O5 A:8M0303 4.3 34.0 0.8
O3 A:8M0303 4.5 32.4 0.8
O25 A:8M0303 4.5 37.7 0.8
O23 A:8M0303 4.6 38.6 0.8
CB A:GLU129 4.7 31.0 1.0
CD A:PRO131 4.8 35.6 1.0
O14 A:8M0303 4.8 33.7 0.8
CD A:GLU129 4.8 54.9 1.0

Molybdenum binding site 7 out of 39 in 5o5w

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Molybdenum binding site 7 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:38.0
occ:0.84
 MO7 A:8M0303 0.0 38.0 0.8
O21 A:8M0303 1.9 37.7 0.8
O23 A:8M0303 1.9 38.6 0.8
O14 A:8M0303 2.0 33.7 0.8
O17 A:8M0303 2.0 35.4 0.8
O16 A:8M0303 2.2 37.3 0.8
O11 A:8M0303 2.2 32.8 0.8
MO6 A:8M0303 3.3 33.6 0.8
MO5 A:8M0303 3.4 39.9 0.8
O25 A:8M0303 3.5 37.7 0.8
MO8 A:8M0303 3.5 39.3 0.8
CE1 A:HIS156 3.8 46.6 1.0
O19 A:8M0303 3.8 35.4 0.8
O20 A:8M0303 3.8 38.9 0.8
ND1 A:HIS130 4.0 33.5 1.0
NE2 A:HIS156 4.1 46.7 1.0
MO4 A:8M0303 4.2 33.7 0.8
CB A:HIS130 4.4 29.4 1.0
O26 A:8M0303 4.5 35.5 0.8
O12 A:8M0303 4.6 35.2 0.8
O1 B:8M0301 4.6 31.8 0.6
O18 A:8M0303 4.7 32.9 0.8
CG A:HIS130 4.7 32.6 1.0
O15 A:8M0303 4.7 35.6 0.8
CB A:PRO154 4.7 35.6 1.0
O7 A:8M0303 4.9 34.1 0.8
O13 A:8M0303 4.9 36.3 0.8
O5 A:8M0303 4.9 34.0 0.8
O22 A:8M0303 5.0 36.7 0.8

Molybdenum binding site 8 out of 39 in 5o5w

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Molybdenum binding site 8 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:39.3
occ:0.84
 MO8 A:8M0303 0.0 39.3 0.8
O22 A:8M0303 1.9 36.7 0.8
O16 A:8M0303 2.0 37.3 0.8
O20 A:8M0303 2.0 38.9 0.8
O25 A:8M0303 2.1 37.7 0.8
O11 A:8M0303 2.3 32.8 0.8
O5 A:8M0303 2.4 34.0 0.8
O26 A:8M0303 3.0 35.5 0.8
MO2 A:8M0303 3.3 33.9 0.8
MO4 A:8M0303 3.4 33.7 0.8
MO5 A:8M0303 3.4 39.9 0.8
O15 A:8M0303 3.5 35.6 0.8
MO6 A:8M0303 3.5 33.6 0.8
MO7 A:8M0303 3.5 38.0 0.8
O6 A:8M0303 3.6 38.0 0.8
O17 A:8M0303 3.6 35.4 0.8
O14 A:8M0303 3.9 33.7 0.8
O7 A:8M0303 3.9 34.1 0.8
O3 A:8M0303 4.0 32.4 0.8
MO1 A:8M0303 4.1 35.0 0.8
O2 A:8M0303 4.3 35.8 0.8
O4 A:8M0303 4.3 32.1 0.8
O18 A:8M0303 4.4 32.9 0.8
O24 A:8M0303 4.4 31.0 0.8
O23 A:8M0303 4.8 38.6 0.8
MO3 A:8M0303 4.9 35.7 0.8
O8 A:8M0303 4.9 30.9 0.8

Molybdenum binding site 9 out of 39 in 5o5w

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Molybdenum binding site 9 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo304

b:29.2
occ:0.87
 MO1 A:M10304 0.0 29.2 0.9
O6 A:M10304 1.9 25.4 0.9
O1 A:M10304 1.9 9.7 0.3
O12 A:M10304 2.0 52.5 0.9
O5 A:M10304 2.0 26.3 0.9
O4 A:M10304 2.3 40.7 0.3
NE2 A:HIS140 2.3 29.0 1.0
CD2 A:HIS140 3.2 30.3 1.0
CE1 A:HIS140 3.3 29.2 1.0
O A:HOH440 4.2 34.5 1.0
CG A:HIS140 4.4 29.7 1.0
ND1 A:HIS140 4.4 30.7 1.0
CG2 A:THR132 4.6 35.7 1.0
O A:HOH439 4.7 37.8 1.0

Molybdenum binding site 10 out of 39 in 5o5w

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Molybdenum binding site 10 out of 39 in the Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of Molybdenum Storage Protein Room-Temperature Structure Determined By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo305

b:46.9
occ:0.50
 MO A:MO307 2.0 57.3 0.5
MO A:MO306 3.1 64.6 1.0
MO A:MO308 3.5 72.3 0.3

Reference:

T.Weinert, N.Olieric, R.Cheng, S.Brunle, D.James, D.Ozerov, D.Gashi, L.Vera, M.Marsh, K.Jaeger, F.Dworkowski, E.Panepucci, S.Basu, P.Skopintsev, A.S.Dore, T.Geng, R.M.Cooke, M.Liang, A.E.Prota, V.Panneels, P.Nogly, U.Ermler, G.Schertler, M.Hennig, M.O.Steinmetz, M.Wang, J.Standfuss. Serial Millisecond Crystallography For Routine Room-Temperature Structure Determination at Synchrotrons. Nat Commun V. 8 542 2017.
ISSN: ESSN 2041-1723
PubMed: 28912485
DOI: 10.1038/S41467-017-00630-4
Page generated: Sun Oct 6 16:28:37 2024

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