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Molybdenum in PDB 5y6q: Crystal Structure of An Aldehyde Oxidase From Methylobacillus Sp. KY4400

Protein crystallography data

The structure of Crystal Structure of An Aldehyde Oxidase From Methylobacillus Sp. KY4400, PDB code: 5y6q was solved by B.Mikami, H.Uchida, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.12 / 2.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.972, 77.972, 400.340, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 23.3

Other elements in 5y6q:

The structure of Crystal Structure of An Aldehyde Oxidase From Methylobacillus Sp. KY4400 also contains other interesting chemical elements:

Iron (Fe) 8 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Crystal Structure of An Aldehyde Oxidase From Methylobacillus Sp. KY4400 (pdb code 5y6q). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total only one binding site of Molybdenum was determined in the Crystal Structure of An Aldehyde Oxidase From Methylobacillus Sp. KY4400, PDB code: 5y6q:

Molybdenum binding site 1 out of 1 in 5y6q

Go back to Molybdenum Binding Sites List in 5y6q
Molybdenum binding site 1 out of 1 in the Crystal Structure of An Aldehyde Oxidase From Methylobacillus Sp. KY4400


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of An Aldehyde Oxidase From Methylobacillus Sp. KY4400 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo801

b:23.7
occ:1.00
MO C:MOS801 0.0 23.7 1.0
O1 C:MOS801 1.9 17.2 1.0
O2 C:MOS801 1.9 24.3 1.0
S C:MOS801 2.3 26.1 1.0
S7' C:MCN802 2.5 19.7 1.0
S8' C:MCN802 2.7 23.4 1.0
OE2 C:GLU742 3.2 21.0 1.0
C7' C:MCN802 3.5 17.2 1.0
C8' C:MCN802 3.6 17.2 1.0
CD C:GLU742 3.7 18.5 1.0
CA C:GLY263 4.0 14.2 1.0
N C:GLY263 4.2 15.9 1.0
CA C:GLY527 4.2 12.6 1.0
N C:GLY528 4.3 20.5 1.0
OE1 C:GLU742 4.3 18.3 1.0
CG C:GLU742 4.4 15.7 1.0
CE3 C:TRP369 4.4 15.1 1.0
C C:PHE262 4.6 15.4 1.0
O C:PHE262 4.7 14.5 1.0
OE1 C:GLN231 4.7 14.8 1.0
CD C:PRO373 4.8 16.8 1.0
C C:GLY527 4.8 15.2 1.0
CA C:ARG371 4.8 14.0 1.0
C6' C:MCN802 4.9 16.6 1.0
N C:ALA372 5.0 15.2 1.0

Reference:

H.Uchida, B.Mikami, A.Yamane-Tanabe, A.Ito, K.Hirano, M.Oki. Crystal Structure of An Aldehyde Oxidase From Methylobacillus Sp. KY4400. J. Biochem. V. 163 321 2018.
ISSN: ISSN 1756-2651
PubMed: 29319807
DOI: 10.1093/JB/MVY004
Page generated: Tue Dec 15 05:20:08 2020

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