Molybdenum in PDB 6cz7: The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3
Protein crystallography data
The structure of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3, PDB code: 6cz7
was solved by
N.R.Glasser,
D.K.Newman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.91 /
1.62
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
231.259,
85.639,
146.676,
90.00,
127.84,
90.00
|
R / Rfree (%)
|
13.7 /
15.5
|
Other elements in 6cz7:
The structure of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 also contains other interesting chemical elements:
Molybdenum Binding Sites:
The binding sites of Molybdenum atom in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3
(pdb code 6cz7). This binding sites where shown within
5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the
The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3, PDB code: 6cz7:
Jump to Molybdenum binding site number:
1;
2;
Molybdenum binding site 1 out
of 2 in 6cz7
Go back to
Molybdenum Binding Sites List in 6cz7
Molybdenum binding site 1 out
of 2 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 1 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mo904
b:22.9
occ:1.00
|
SG
|
A:CYS193
|
2.2
|
21.0
|
1.0
|
O
|
A:HOH1005
|
2.3
|
29.2
|
0.6
|
S13
|
A:MGD902
|
2.3
|
20.9
|
1.0
|
S13
|
A:MGD903
|
2.4
|
20.4
|
1.0
|
S12
|
A:MGD903
|
2.4
|
20.7
|
1.0
|
S12
|
A:MGD902
|
2.4
|
22.1
|
1.0
|
HA
|
A:CYS193
|
3.1
|
26.8
|
1.0
|
CB
|
A:CYS193
|
3.2
|
21.4
|
1.0
|
HB2
|
A:CYS193
|
3.2
|
25.7
|
1.0
|
C13
|
A:MGD902
|
3.3
|
18.6
|
1.0
|
C12
|
A:MGD902
|
3.4
|
19.8
|
1.0
|
C13
|
A:MGD903
|
3.4
|
19.0
|
1.0
|
C12
|
A:MGD903
|
3.5
|
21.5
|
1.0
|
HH22
|
A:ARG165
|
3.6
|
24.9
|
1.0
|
CA
|
A:CYS193
|
3.6
|
22.3
|
1.0
|
O
|
A:HOH1339
|
4.1
|
18.9
|
1.0
|
O
|
A:HOH1297
|
4.1
|
18.4
|
1.0
|
HB3
|
A:CYS193
|
4.1
|
25.7
|
1.0
|
HD2
|
A:ARG374
|
4.2
|
25.0
|
1.0
|
HH21
|
A:ARG165
|
4.2
|
24.9
|
1.0
|
C
|
A:CYS193
|
4.2
|
21.8
|
1.0
|
NH2
|
A:ARG165
|
4.2
|
20.7
|
1.0
|
O
|
A:HOH1176
|
4.4
|
23.9
|
1.0
|
O
|
A:CYS193
|
4.5
|
21.8
|
1.0
|
H15
|
A:MGD902
|
4.5
|
21.9
|
1.0
|
HG21
|
A:THR65
|
4.6
|
25.4
|
1.0
|
HG1
|
A:THR65
|
4.6
|
25.5
|
1.0
|
HZ3
|
A:LYS724
|
4.6
|
23.7
|
1.0
|
C11
|
A:MGD902
|
4.6
|
19.9
|
1.0
|
HB2
|
A:ALA194
|
4.7
|
26.0
|
1.0
|
OE1
|
A:GLU730
|
4.7
|
20.6
|
1.0
|
C14
|
A:MGD902
|
4.7
|
17.4
|
1.0
|
C11
|
A:MGD903
|
4.8
|
19.9
|
1.0
|
HE2
|
A:LYS724
|
4.8
|
24.4
|
1.0
|
HG23
|
A:THR65
|
4.8
|
25.4
|
1.0
|
C14
|
A:MGD903
|
4.8
|
20.4
|
1.0
|
O
|
A:HOH1087
|
4.8
|
24.4
|
1.0
|
HH11
|
A:ARG374
|
4.9
|
26.2
|
1.0
|
HD3
|
A:ARG374
|
4.9
|
25.0
|
1.0
|
N
|
A:CYS193
|
4.9
|
22.2
|
1.0
|
N
|
A:ALA194
|
5.0
|
23.5
|
1.0
|
H11
|
A:MGD902
|
5.0
|
23.9
|
1.0
|
CD
|
A:ARG374
|
5.0
|
20.8
|
1.0
|
N15
|
A:MGD902
|
5.0
|
18.3
|
1.0
|
H11
|
A:MGD903
|
5.0
|
23.9
|
1.0
|
HH21
|
A:ARG233
|
5.0
|
25.2
|
1.0
|
|
Molybdenum binding site 2 out
of 2 in 6cz7
Go back to
Molybdenum Binding Sites List in 6cz7
Molybdenum binding site 2 out
of 2 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3
Mono view
Stereo pair view
|
A full contact list of Molybdenum with other atoms in the Mo binding
site number 2 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mo904
b:18.1
occ:1.00
|
SG
|
C:CYS193
|
2.2
|
17.4
|
1.0
|
S13
|
C:MGD902
|
2.2
|
15.4
|
1.0
|
S13
|
C:MGD903
|
2.3
|
15.4
|
1.0
|
S12
|
C:MGD903
|
2.4
|
15.2
|
1.0
|
S12
|
C:MGD902
|
2.4
|
15.6
|
1.0
|
HA
|
C:CYS193
|
3.1
|
19.9
|
1.0
|
CB
|
C:CYS193
|
3.3
|
14.9
|
1.0
|
HB2
|
C:CYS193
|
3.3
|
17.9
|
1.0
|
C13
|
C:MGD902
|
3.3
|
14.7
|
1.0
|
C13
|
C:MGD903
|
3.4
|
14.6
|
1.0
|
C12
|
C:MGD902
|
3.4
|
14.0
|
1.0
|
HH22
|
C:ARG165
|
3.5
|
20.7
|
1.0
|
C12
|
C:MGD903
|
3.5
|
15.3
|
1.0
|
CA
|
C:CYS193
|
3.7
|
16.6
|
1.0
|
O
|
C:HOH1259
|
4.0
|
16.7
|
1.0
|
O
|
C:HOH1414
|
4.1
|
15.5
|
1.0
|
HH21
|
C:ARG165
|
4.1
|
20.7
|
1.0
|
NH2
|
C:ARG165
|
4.1
|
17.2
|
1.0
|
HB3
|
C:CYS193
|
4.1
|
17.9
|
1.0
|
HD2
|
C:ARG374
|
4.2
|
19.2
|
1.0
|
C
|
C:CYS193
|
4.2
|
16.2
|
1.0
|
O
|
C:CYS193
|
4.5
|
16.5
|
1.0
|
H15
|
C:MGD902
|
4.5
|
17.1
|
1.0
|
O
|
C:HOH1199
|
4.5
|
24.7
|
1.0
|
HZ3
|
C:LYS724
|
4.6
|
17.7
|
1.0
|
HG21
|
C:THR65
|
4.7
|
21.6
|
1.0
|
C14
|
C:MGD902
|
4.7
|
15.3
|
1.0
|
HG23
|
C:THR65
|
4.7
|
21.6
|
1.0
|
C11
|
C:MGD902
|
4.7
|
14.9
|
1.0
|
HB2
|
C:ALA194
|
4.7
|
20.9
|
1.0
|
O
|
C:HOH1179
|
4.7
|
19.7
|
1.0
|
OE1
|
C:GLU730
|
4.7
|
15.5
|
1.0
|
C11
|
C:MGD903
|
4.7
|
15.4
|
1.0
|
HE2
|
C:LYS724
|
4.7
|
16.8
|
1.0
|
HG1
|
C:THR65
|
4.8
|
20.1
|
1.0
|
C14
|
C:MGD903
|
4.8
|
13.9
|
1.0
|
HH11
|
C:ARG374
|
4.8
|
18.2
|
1.0
|
H11
|
C:MGD903
|
4.9
|
18.5
|
1.0
|
N
|
C:CYS193
|
5.0
|
17.5
|
1.0
|
N15
|
C:MGD902
|
5.0
|
14.2
|
1.0
|
HD3
|
C:ARG374
|
5.0
|
19.2
|
1.0
|
HH21
|
C:ARG233
|
5.0
|
18.0
|
1.0
|
|
Reference:
N.R.Glasser,
P.H.Oyala,
T.H.Osborne,
J.M.Santini,
D.K.Newman.
Structural and Mechanistic Analysis of the Arsenate Respiratory Reductase Provides Insight Into Environmental Arsenic Transformations. Proc. Natl. Acad. Sci. V. 115 E8614 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30104376
DOI: 10.1073/PNAS.1807984115
Page generated: Sun Oct 6 16:30:36 2024
|