Atomistry » Molybdenum » PDB 5nqd-6op3 » 6cza
Atomistry »
  Molybdenum »
    PDB 5nqd-6op3 »
      6cza »

Molybdenum in PDB 6cza: The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate

Protein crystallography data

The structure of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate, PDB code: 6cza was solved by N.R.Glasser, D.K.Newman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.70 / 1.71
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 232.397, 86.366, 147.429, 90.00, 127.61, 90.00
R / Rfree (%) 13.2 / 15.4

Other elements in 6cza:

The structure of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate also contains other interesting chemical elements:

Iron (Fe) 40 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate (pdb code 6cza). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate, PDB code: 6cza:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 6cza

Go back to Molybdenum Binding Sites List in 6cza
Molybdenum binding site 1 out of 2 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo904

b:20.9
occ:1.00
S13 A:MGD902 2.3 19.8 1.0
SG A:CYS193 2.4 19.1 1.0
S13 A:MGD903 2.4 18.3 1.0
S12 A:MGD902 2.4 19.7 1.0
S12 A:MGD903 2.4 18.8 1.0
HA A:CYS193 3.1 22.0 1.0
HB2 A:CYS193 3.3 21.6 1.0
CB A:CYS193 3.3 18.0 1.0
C13 A:MGD902 3.3 17.8 1.0
C12 A:MGD902 3.4 18.5 1.0
C13 A:MGD903 3.4 17.8 1.0
C12 A:MGD903 3.5 19.2 1.0
CA A:CYS193 3.6 18.3 1.0
HH22 A:ARG165 3.7 21.4 1.0
O A:HOH1134 4.1 18.8 1.0
HD2 A:ARG374 4.1 24.2 1.0
O A:HOH1315 4.1 16.9 1.0
HB3 A:CYS193 4.2 21.6 1.0
C A:CYS193 4.2 20.2 1.0
HH21 A:ARG165 4.2 21.4 1.0
NH2 A:ARG165 4.3 17.8 1.0
H15 A:MGD902 4.4 20.5 1.0
O A:CYS193 4.5 20.9 1.0
O A:HOH1239 4.6 22.0 1.0
OE1 A:GLU730 4.6 19.4 1.0
C11 A:MGD902 4.6 18.4 1.0
HG1 A:THR65 4.6 21.9 1.0
HG21 A:THR65 4.7 23.3 1.0
HB2 A:ALA194 4.7 23.5 1.0
HZ3 A:LYS724 4.7 23.5 1.0
C14 A:MGD902 4.7 17.3 1.0
HE2 A:LYS724 4.7 26.2 1.0
C11 A:MGD903 4.7 18.6 1.0
C14 A:MGD903 4.8 18.5 1.0
HH11 A:ARG374 4.8 22.3 1.0
N15 A:MGD902 4.9 17.1 1.0
HD3 A:ARG374 4.9 24.2 1.0
N A:CYS193 4.9 20.6 1.0
CD A:ARG374 5.0 20.2 1.0
N A:ALA194 5.0 21.5 1.0
H11 A:MGD903 5.0 22.3 1.0
H11 A:MGD902 5.0 22.0 1.0
H15 A:MGD903 5.0 22.4 1.0
HH21 A:ARG233 5.0 22.6 1.0

Molybdenum binding site 2 out of 2 in 6cza

Go back to Molybdenum Binding Sites List in 6cza
Molybdenum binding site 2 out of 2 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo904

b:17.2
occ:1.00
S13 C:MGD902 2.3 14.8 1.0
S12 C:MGD903 2.3 15.4 1.0
S13 C:MGD903 2.3 15.7 1.0
SG C:CYS193 2.4 16.7 1.0
S12 C:MGD902 2.4 15.6 1.0
HA C:CYS193 3.1 19.6 1.0
HB2 C:CYS193 3.3 18.5 1.0
CB C:CYS193 3.3 15.4 1.0
C13 C:MGD903 3.4 14.2 1.0
C13 C:MGD902 3.4 14.3 1.0
C12 C:MGD902 3.4 15.3 1.0
C12 C:MGD903 3.4 14.3 1.0
HH22 C:ARG165 3.6 21.0 1.0
CA C:CYS193 3.7 16.3 1.0
O C:HOH1381 4.1 18.1 1.0
O C:HOH1149 4.1 15.4 1.0
HD2 C:ARG374 4.1 21.0 1.0
HH21 C:ARG165 4.2 21.0 1.0
HB3 C:CYS193 4.2 18.5 1.0
NH2 C:ARG165 4.2 17.5 1.0
C C:CYS193 4.2 15.7 1.0
H15 C:MGD902 4.5 17.8 1.0
O C:CYS193 4.5 16.1 1.0
O C:HOH1318 4.5 22.9 1.0
HZ3 C:LYS724 4.5 19.9 1.0
OE1 C:GLU730 4.6 15.4 1.0
HE2 C:LYS724 4.7 17.6 1.0
HB2 C:ALA194 4.7 20.4 1.0
C14 C:MGD902 4.7 15.8 1.0
C11 C:MGD902 4.7 15.1 1.0
C11 C:MGD903 4.7 15.6 1.0
C14 C:MGD903 4.7 14.7 1.0
HH11 C:ARG374 4.7 18.0 1.0
HG23 C:THR65 4.8 20.6 1.0
HG21 C:THR65 4.8 20.6 1.0
HD3 C:ARG374 4.9 21.0 1.0
N15 C:MGD902 4.9 14.8 1.0
H11 C:MGD903 5.0 18.7 1.0
CD C:ARG374 5.0 17.5 1.0
N C:CYS193 5.0 17.0 1.0
HG1 C:THR65 5.0 19.1 1.0
HH21 C:ARG233 5.0 20.6 1.0

Reference:

N.R.Glasser, P.H.Oyala, T.H.Osborne, J.M.Santini, D.K.Newman. Structural and Mechanistic Analysis of the Arsenate Respiratory Reductase Provides Insight Into Environmental Arsenic Transformations. Proc. Natl. Acad. Sci. V. 115 E8614 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30104376
DOI: 10.1073/PNAS.1807984115
Page generated: Tue Dec 15 05:20:23 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy