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Molybdenum in PDB 6etf: The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

Enzymatic activity of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

All present enzymatic activity of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6etf was solved by J.Krausze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.14 / 1.78
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 67.110, 123.570, 131.790, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 21.6

Other elements in 6etf:

The structure of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate (pdb code 6etf). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6etf:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 6etf

Go back to Molybdenum Binding Sites List in 6etf
Molybdenum binding site 1 out of 2 in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo503

b:49.1
occ:0.65
MO A:MOO503 0.0 49.1 0.7
HA2 A:GLY296 1.2 24.1 0.0
O4 A:MOO503 1.9 47.4 0.7
O1 A:MOO503 1.9 46.2 0.7
O2 A:MOO503 1.9 47.4 0.7
O3 A:MOO503 1.9 37.2 0.7
CA A:GLY296 2.3 23.9 0.3
O3 A:MOO503 2.4 52.2 0.3
HA3 A:GLY296 2.7 23.2 0.0
HG A:SER328 2.7 37.7 0.0
H A:GLY296 2.9 25.6 0.0
N A:GLY296 3.1 25.2 0.3
HD3 A:PRO298 3.2 42.0 0.0
C A:GLY296 3.2 26.0 0.3
H A:GLY296 3.3 40.5 0.0
HD2 A:PRO298 3.4 27.9 0.0
H A:LYS297 3.4 42.8 0.0
HD22 A:ASN325 3.4 31.4 0.0
HG A:SER400 3.4 35.5 0.0
OG A:SER328 3.6 37.2 1.0
N A:LYS297 3.7 22.6 0.3
H A:LYS297 3.8 21.8 0.0
HB3 A:LYS297 3.9 46.7 0.0
O A:GLY296 3.9 24.5 0.3
O A:HOH729 3.9 58.2 1.0
HB3 A:SER400 4.1 28.2 0.0
CD A:PRO298 4.1 41.6 0.7
OG A:SER400 4.1 34.9 1.0
MO A:MOO503 4.1 51.3 0.3
HH12 A:ARG369 4.1 45.2 0.0
HB2 A:SER400 4.2 27.0 0.0
HD2 A:PRO298 4.2 40.8 0.0
ND2 A:ASN325 4.2 31.4 1.0
N A:LYS297 4.3 42.7 0.7
C A:PRO295 4.3 30.9 0.3
N A:GLY296 4.3 40.3 0.7
HB3 A:LYS297 4.3 26.4 0.0
CD A:PRO298 4.3 28.4 0.3
CB A:SER400 4.3 27.7 1.0
O A:HOH800 4.3 34.1 1.0
HG3 A:PRO298 4.4 46.8 0.0
HB2 A:ASN325 4.4 31.2 0.0
HD3 A:PRO298 4.4 29.2 0.0
O A:HOH835 4.5 52.6 1.0
HB2 A:LYS297 4.5 47.1 0.0
HD21 A:ASN325 4.5 32.0 0.0
HA A:PRO295 4.6 37.8 0.0
HB3 A:SER328 4.6 26.5 0.0
CB A:LYS297 4.6 46.9 0.7
CB A:SER328 4.6 26.3 1.0
CG A:PRO298 4.6 46.1 0.7
O1 A:MOO503 4.7 51.0 0.3
HG2 A:PRO298 4.7 45.4 0.0
HB2 A:PRO295 4.8 37.2 0.0
HA2 A:GLY296 4.8 38.2 0.0
HB2 A:PRO295 4.8 30.0 0.0
HG2 A:PRO298 4.8 31.6 0.0
HB2 A:SER328 4.9 26.1 0.0
HH11 A:ARG369 4.9 45.8 0.0
NH1 A:ARG369 4.9 45.9 1.0
O A:PRO295 4.9 31.1 0.3
CA A:GLY296 4.9 38.8 0.7
O2 A:MOO503 5.0 52.5 0.3
CA A:LYS297 5.0 23.5 0.3

Molybdenum binding site 2 out of 2 in 6etf

Go back to Molybdenum Binding Sites List in 6etf
Molybdenum binding site 2 out of 2 in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo503

b:51.3
occ:0.35
MO A:MOO503 0.0 51.3 0.3
O1 A:MOO503 1.8 51.0 0.3
O3 A:MOO503 1.9 52.2 0.3
O2 A:MOO503 1.9 52.5 0.3
O4 A:MOO503 1.9 47.0 0.3
HH22 A:ARG369 2.7 61.9 0.0
HH12 A:ARG369 2.8 45.2 0.0
H A:GLY296 2.9 25.6 0.0
O4 A:MOO503 2.9 47.4 0.7
HB3 A:SER400 3.0 28.2 0.0
HG A:SER400 3.1 35.5 0.0
HZ2 A:LYS294 3.1 76.2 0.0
H A:SER400 3.5 27.4 0.0
O A:HOH607 3.6 43.8 1.0
NH2 A:ARG369 3.7 62.5 1.0
O A:HOH669 3.7 52.9 1.0
HA A:PRO295 3.7 30.3 0.0
NH1 A:ARG369 3.8 45.9 1.0
OG A:SER400 3.8 34.9 1.0
CB A:SER400 3.9 27.7 1.0
O A:HOH835 3.9 52.6 1.0
HG3 A:LYS294 3.9 41.7 0.0
N A:GLY296 3.9 25.2 0.3
O1 A:MOO503 4.0 46.2 0.7
NZ A:LYS294 4.1 77.0 1.0
MO A:MOO503 4.1 49.1 0.7
HA2 A:GLY296 4.2 24.1 0.0
CZ A:ARG369 4.2 67.5 1.0
HA A:PRO295 4.2 37.8 0.0
HB3 A:PRO295 4.3 38.2 0.0
HZ3 A:LYS294 4.3 77.8 0.0
HZ1 A:LYS294 4.3 77.1 0.0
N A:SER400 4.4 26.7 1.0
HH21 A:ARG369 4.5 63.5 0.0
HH11 A:ARG369 4.6 45.8 0.0
HB3 A:PRO295 4.6 30.7 0.0
CA A:PRO295 4.6 29.6 0.3
CA A:GLY296 4.6 23.9 0.3
HB2 A:SER400 4.6 27.0 0.0
HA A:MET399 4.7 36.1 0.0
CA A:SER400 4.8 25.7 1.0
C A:PRO295 4.8 30.9 0.3
HB2 A:PRO295 4.9 30.0 0.0
CG A:LYS294 4.9 41.8 1.0
CB A:PRO295 4.9 30.4 0.3
HG2 A:LYS294 5.0 41.0 0.0
CB A:PRO295 5.0 37.7 0.7

Reference:

J.Krausze, T.W.Hercher, D.Zwerschke, M.L.Kirk, W.Blankenfeldt, R.R.Mendel, T.Kruse. The Functional Principle of Eukaryotic Molybdenum Insertases. Biochem. J. V. 475 1739 2018.
ISSN: ESSN 1470-8728
PubMed: 29717023
DOI: 10.1042/BCJ20170935
Page generated: Tue Dec 15 05:20:23 2020

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