Molybdenum in PDB 6etf: The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

All present enzymatic activity of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate:
2.10.1.1; 2.7.7.75;

The structure of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6etf was solved by J.Krausze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.14 / 1.78
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	67.110, 123.570, 131.790, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 21.6

The structure of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Molybdenum atom in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate (pdb code 6etf). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6etf:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo503 b:49.1 occ:0.65 MO A:MOO503 0.0 49.1 0.7 HA2 A:GLY296 1.2 24.1 0.0 O4 A:MOO503 1.9 47.4 0.7 O1 A:MOO503 1.9 46.2 0.7 O2 A:MOO503 1.9 47.4 0.7 O3 A:MOO503 1.9 37.2 0.7 CA A:GLY296 2.3 23.9 0.3 O3 A:MOO503 2.4 52.2 0.3 HA3 A:GLY296 2.7 23.2 0.0 HG A:SER328 2.7 37.7 0.0 H A:GLY296 2.9 25.6 0.0 N A:GLY296 3.1 25.2 0.3 HD3 A:PRO298 3.2 42.0 0.0 C A:GLY296 3.2 26.0 0.3 H A:GLY296 3.3 40.5 0.0 HD2 A:PRO298 3.4 27.9 0.0 H A:LYS297 3.4 42.8 0.0 HD22 A:ASN325 3.4 31.4 0.0 HG A:SER400 3.4 35.5 0.0 OG A:SER328 3.6 37.2 1.0 N A:LYS297 3.7 22.6 0.3 H A:LYS297 3.8 21.8 0.0 HB3 A:LYS297 3.9 46.7 0.0 O A:GLY296 3.9 24.5 0.3 O A:HOH729 3.9 58.2 1.0 HB3 A:SER400 4.1 28.2 0.0 CD A:PRO298 4.1 41.6 0.7 OG A:SER400 4.1 34.9 1.0 MO A:MOO503 4.1 51.3 0.3 HH12 A:ARG369 4.1 45.2 0.0 HB2 A:SER400 4.2 27.0 0.0 HD2 A:PRO298 4.2 40.8 0.0 ND2 A:ASN325 4.2 31.4 1.0 N A:LYS297 4.3 42.7 0.7 C A:PRO295 4.3 30.9 0.3 N A:GLY296 4.3 40.3 0.7 HB3 A:LYS297 4.3 26.4 0.0 CD A:PRO298 4.3 28.4 0.3 CB A:SER400 4.3 27.7 1.0 O A:HOH800 4.3 34.1 1.0 HG3 A:PRO298 4.4 46.8 0.0 HB2 A:ASN325 4.4 31.2 0.0 HD3 A:PRO298 4.4 29.2 0.0 O A:HOH835 4.5 52.6 1.0 HB2 A:LYS297 4.5 47.1 0.0 HD21 A:ASN325 4.5 32.0 0.0 HA A:PRO295 4.6 37.8 0.0 HB3 A:SER328 4.6 26.5 0.0 CB A:LYS297 4.6 46.9 0.7 CB A:SER328 4.6 26.3 1.0 CG A:PRO298 4.6 46.1 0.7 O1 A:MOO503 4.7 51.0 0.3 HG2 A:PRO298 4.7 45.4 0.0 HB2 A:PRO295 4.8 37.2 0.0 HA2 A:GLY296 4.8 38.2 0.0 HB2 A:PRO295 4.8 30.0 0.0 HG2 A:PRO298 4.8 31.6 0.0 HB2 A:SER328 4.9 26.1 0.0 HH11 A:ARG369 4.9 45.8 0.0 NH1 A:ARG369 4.9 45.9 1.0 O A:PRO295 4.9 31.1 0.3 CA A:GLY296 4.9 38.8 0.7 O2 A:MOO503 5.0 52.5 0.3 CA A:LYS297 5.0 23.5 0.3

Molybdenum binding site 2 out of 2 in the The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Structure of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo503 b:51.3 occ:0.35 MO A:MOO503 0.0 51.3 0.3 O1 A:MOO503 1.8 51.0 0.3 O3 A:MOO503 1.9 52.2 0.3 O2 A:MOO503 1.9 52.5 0.3 O4 A:MOO503 1.9 47.0 0.3 HH22 A:ARG369 2.7 61.9 0.0 HH12 A:ARG369 2.8 45.2 0.0 H A:GLY296 2.9 25.6 0.0 O4 A:MOO503 2.9 47.4 0.7 HB3 A:SER400 3.0 28.2 0.0 HG A:SER400 3.1 35.5 0.0 HZ2 A:LYS294 3.1 76.2 0.0 H A:SER400 3.5 27.4 0.0 O A:HOH607 3.6 43.8 1.0 NH2 A:ARG369 3.7 62.5 1.0 O A:HOH669 3.7 52.9 1.0 HA A:PRO295 3.7 30.3 0.0 NH1 A:ARG369 3.8 45.9 1.0 OG A:SER400 3.8 34.9 1.0 CB A:SER400 3.9 27.7 1.0 O A:HOH835 3.9 52.6 1.0 HG3 A:LYS294 3.9 41.7 0.0 N A:GLY296 3.9 25.2 0.3 O1 A:MOO503 4.0 46.2 0.7 NZ A:LYS294 4.1 77.0 1.0 MO A:MOO503 4.1 49.1 0.7 HA2 A:GLY296 4.2 24.1 0.0 CZ A:ARG369 4.2 67.5 1.0 HA A:PRO295 4.2 37.8 0.0 HB3 A:PRO295 4.3 38.2 0.0 HZ3 A:LYS294 4.3 77.8 0.0 HZ1 A:LYS294 4.3 77.1 0.0 N A:SER400 4.4 26.7 1.0 HH21 A:ARG369 4.5 63.5 0.0 HH11 A:ARG369 4.6 45.8 0.0 HB3 A:PRO295 4.6 30.7 0.0 CA A:PRO295 4.6 29.6 0.3 CA A:GLY296 4.6 23.9 0.3 HB2 A:SER400 4.6 27.0 0.0 HA A:MET399 4.7 36.1 0.0 CA A:SER400 4.8 25.7 1.0 C A:PRO295 4.8 30.9 0.3 HB2 A:PRO295 4.9 30.0 0.0 CG A:LYS294 4.9 41.8 1.0 CB A:PRO295 4.9 30.4 0.3 HG2 A:LYS294 5.0 41.0 0.0 CB A:PRO295 5.0 37.7 0.7

J.Krausze, T.W.Hercher, D.Zwerschke, M.L.Kirk, W.Blankenfeldt, R.R.Mendel, T.Kruse. The Functional Principle of Eukaryotic Molybdenum Insertases. Biochem. J. V. 475 1739 2018.
ISSN: ESSN 1470-8728
PubMed: 29717023
DOI: 10.1042/BCJ20170935