Atomistry » Molybdenum » PDB 5nqd-6op3 » 6gb4
Atomistry »
  Molybdenum »
    PDB 5nqd-6op3 »
      6gb4 »

Molybdenum in PDB 6gb4: The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

Enzymatic activity of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

All present enzymatic activity of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gb4 was solved by J.Krausze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.29 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.310, 122.580, 133.000, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.8

Other elements in 6gb4:

The structure of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate (pdb code 6gb4). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gb4:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 6gb4

Go back to Molybdenum Binding Sites List in 6gb4
Molybdenum binding site 1 out of 2 in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo505

b:56.0
occ:0.50
 MO A:MOO505 0.0 56.0 0.5
O2 A:MOO505 1.9 57.8 0.5
O4 A:MOO505 1.9 47.9 0.5
O3 A:MOO505 1.9 58.2 0.5
O1 A:MOO505 1.9 45.6 0.5
HH22 A:ARG369 3.0 51.8 0.0
H A:GLY296 3.2 28.7 0.0
HH12 A:ARG369 3.4 49.3 0.0
HZ2 A:LYS294 3.4 87.5 0.0
O A:HOH622 3.4 43.6 1.0
HB3 A:SER400 3.5 31.1 0.0
HG A:SER400 3.5 40.6 0.0
H A:SER400 3.6 26.8 0.0
HZ2 A:LYS294 3.7 76.4 0.0
HG3 A:LYS294 3.7 49.4 0.0
HA A:PRO295 3.8 26.1 0.0
O2 A:MOO505 3.8 71.5 0.5
O1 A:MOO505 3.9 73.3 0.5
HG3 A:LYS294 3.9 40.5 0.0
HB3 A:PRO295 4.0 39.1 0.0
NH2 A:ARG369 4.0 52.1 1.0
HZ3 A:LYS294 4.1 88.7 0.0
OG A:SER400 4.1 40.2 1.0
N A:GLY296 4.2 28.3 0.5
NZ A:LYS294 4.2 88.2 0.5
CB A:SER400 4.3 30.7 1.0
HA A:PRO295 4.3 38.0 0.0
NH1 A:ARG369 4.3 49.7 1.0
HZ3 A:LYS294 4.3 77.5 0.0
NZ A:LYS294 4.5 77.0 0.5
N A:SER400 4.5 26.3 1.0
HA2 A:GLY296 4.5 28.7 0.0
HA A:MET399 4.5 35.1 0.0
MO A:MOO505 4.6 72.5 0.5
CA A:PRO295 4.6 25.5 0.5
HB3 A:PRO295 4.6 26.8 0.0
CZ A:ARG369 4.7 63.9 1.0
HZ1 A:LYS294 4.7 88.4 0.0
HH21 A:ARG369 4.7 52.9 0.0
HB2 A:PRO295 4.7 26.2 0.0
CG A:LYS294 4.7 49.6 0.5
CB A:PRO295 4.9 38.6 0.5
CB A:PRO295 4.9 26.4 0.5
CG A:LYS294 4.9 40.7 0.5
HD2 A:LYS294 4.9 53.2 0.0
HG2 A:LYS294 5.0 49.2 0.0
CA A:GLY296 5.0 28.5 0.5
C A:PRO295 5.0 29.4 0.5

Molybdenum binding site 2 out of 2 in 6gb4

Go back to Molybdenum Binding Sites List in 6gb4
Molybdenum binding site 2 out of 2 in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo505

b:72.5
occ:0.50
 MO A:MOO505 0.0 72.5 0.5
HA2 A:GLY296 1.5 28.7 0.0
O1 A:MOO505 1.9 73.3 0.5
O4 A:MOO505 1.9 68.3 0.5
O2 A:MOO505 1.9 71.5 0.5
O3 A:MOO505 1.9 71.8 0.5
CA A:GLY296 2.5 28.5 0.5
HA3 A:GLY296 2.7 27.9 0.0
O4 A:MOO505 2.9 47.9 0.5
H A:GLY296 3.1 37.8 0.0
H A:GLY296 3.2 28.7 0.0
HG A:SER400 3.2 40.6 0.0
N A:GLY296 3.3 28.3 0.5
HD22 A:ASN325 3.4 34.6 0.0
H A:LYS297 3.5 35.9 0.0
C A:GLY296 3.5 33.0 0.5
HD2 A:PRO298 3.6 35.3 0.0
HD2 A:PRO298 3.7 35.2 0.0
H A:LYS297 3.7 28.4 0.0
HD3 A:PRO298 3.8 36.1 0.0
HB2 A:ALA328 3.8 26.7 0.0
HB3 A:LYS297 3.8 38.3 0.0
N A:LYS297 3.9 28.9 0.5
O A:HOH745 4.1 32.4 1.0
OG A:SER400 4.1 40.2 1.0
N A:GLY296 4.1 37.6 0.5
ND2 A:ASN325 4.2 34.6 1.0
CD A:PRO298 4.2 35.5 0.5
HB3 A:SER400 4.2 31.1 0.0
HB2 A:PRO295 4.2 38.2 0.0
HB2 A:ASN325 4.3 25.6 0.0
N A:LYS297 4.3 35.6 0.5
C A:PRO295 4.4 29.4 0.5
HB1 A:ALA328 4.4 26.4 0.0
O A:GLY296 4.4 33.4 0.5
HB2 A:SER400 4.4 30.2 0.0
HA A:PRO295 4.4 38.0 0.0
CB A:SER400 4.5 30.7 1.0
CB A:ALA328 4.5 26.2 1.0
HH12 A:ARG369 4.5 49.3 0.0
HD21 A:ASN325 4.6 35.1 0.0
HA2 A:GLY296 4.6 35.4 0.0
HB2 A:PRO295 4.6 26.2 0.0
MO A:MOO505 4.6 56.0 0.5
CD A:PRO298 4.7 35.3 0.5
HB3 A:LYS297 4.8 33.0 0.0
HB3 A:ALA328 4.8 26.0 0.0
CA A:GLY296 4.8 35.8 0.5
CB A:LYS297 4.8 38.5 0.5
HB3 A:PRO323 4.9 28.9 0.0
CB A:PRO295 4.9 38.6 0.5
HB3 A:PRO295 4.9 39.1 0.0
HG3 A:PRO298 4.9 39.8 0.0
O A:PRO295 5.0 28.3 0.5
C A:GLY296 5.0 39.9 0.5
HG2 A:PRO298 5.0 38.8 0.0
CA A:PRO295 5.0 37.4 0.5

Reference:

J.Krausze, T.W.Hercher, D.Zwerschke, M.L.Kirk, W.Blankenfeldt, R.R.Mendel, T.Kruse. The Functional Principle of Eukaryotic Molybdenum Insertases. Biochem. J. V. 475 1739 2018.
ISSN: ESSN 1470-8728
PubMed: 29717023
DOI: 10.1042/BCJ20170935
Page generated: Sun Oct 6 16:32:09 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy