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Molybdenum in PDB 6gb4: The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

Enzymatic activity of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

All present enzymatic activity of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gb4 was solved by J.Krausze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.29 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.310, 122.580, 133.000, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.8

Other elements in 6gb4:

The structure of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate (pdb code 6gb4). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gb4:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 6gb4

Go back to Molybdenum Binding Sites List in 6gb4
Molybdenum binding site 1 out of 2 in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo505

b:56.0
occ:0.50
 MO A:MOO505 0.0 56.0 0.5
O2 A:MOO505 1.9 57.8 0.5
O4 A:MOO505 1.9 47.9 0.5
O3 A:MOO505 1.9 58.2 0.5
O1 A:MOO505 1.9 45.6 0.5
HH22 A:ARG369 3.0 51.8 0.0
H A:GLY296 3.2 28.7 0.0
HH12 A:ARG369 3.4 49.3 0.0
HZ2 A:LYS294 3.4 87.5 0.0
O A:HOH622 3.4 43.6 1.0
HB3 A:SER400 3.5 31.1 0.0
HG A:SER400 3.5 40.6 0.0
H A:SER400 3.6 26.8 0.0
HZ2 A:LYS294 3.7 76.4 0.0
HG3 A:LYS294 3.7 49.4 0.0
HA A:PRO295 3.8 26.1 0.0
O2 A:MOO505 3.8 71.5 0.5
O1 A:MOO505 3.9 73.3 0.5
HG3 A:LYS294 3.9 40.5 0.0
HB3 A:PRO295 4.0 39.1 0.0
NH2 A:ARG369 4.0 52.1 1.0
HZ3 A:LYS294 4.1 88.7 0.0
OG A:SER400 4.1 40.2 1.0
N A:GLY296 4.2 28.3 0.5
NZ A:LYS294 4.2 88.2 0.5
CB A:SER400 4.3 30.7 1.0
HA A:PRO295 4.3 38.0 0.0
NH1 A:ARG369 4.3 49.7 1.0
HZ3 A:LYS294 4.3 77.5 0.0
NZ A:LYS294 4.5 77.0 0.5
N A:SER400 4.5 26.3 1.0
HA2 A:GLY296 4.5 28.7 0.0
HA A:MET399 4.5 35.1 0.0
MO A:MOO505 4.6 72.5 0.5
CA A:PRO295 4.6 25.5 0.5
HB3 A:PRO295 4.6 26.8 0.0
CZ A:ARG369 4.7 63.9 1.0
HZ1 A:LYS294 4.7 88.4 0.0
HH21 A:ARG369 4.7 52.9 0.0
HB2 A:PRO295 4.7 26.2 0.0
CG A:LYS294 4.7 49.6 0.5
CB A:PRO295 4.9 38.6 0.5
CB A:PRO295 4.9 26.4 0.5
CG A:LYS294 4.9 40.7 0.5
HD2 A:LYS294 4.9 53.2 0.0
HG2 A:LYS294 5.0 49.2 0.0
CA A:GLY296 5.0 28.5 0.5
C A:PRO295 5.0 29.4 0.5

Molybdenum binding site 2 out of 2 in 6gb4

Go back to Molybdenum Binding Sites List in 6gb4
Molybdenum binding site 2 out of 2 in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo505

b:72.5
occ:0.50
 MO A:MOO505 0.0 72.5 0.5
HA2 A:GLY296 1.5 28.7 0.0
O1 A:MOO505 1.9 73.3 0.5
O4 A:MOO505 1.9 68.3 0.5
O2 A:MOO505 1.9 71.5 0.5
O3 A:MOO505 1.9 71.8 0.5
CA A:GLY296 2.5 28.5 0.5
HA3 A:GLY296 2.7 27.9 0.0
O4 A:MOO505 2.9 47.9 0.5
H A:GLY296 3.1 37.8 0.0
H A:GLY296 3.2 28.7 0.0
HG A:SER400 3.2 40.6 0.0
N A:GLY296 3.3 28.3 0.5
HD22 A:ASN325 3.4 34.6 0.0
H A:LYS297 3.5 35.9 0.0
C A:GLY296 3.5 33.0 0.5
HD2 A:PRO298 3.6 35.3 0.0
HD2 A:PRO298 3.7 35.2 0.0
H A:LYS297 3.7 28.4 0.0
HD3 A:PRO298 3.8 36.1 0.0
HB2 A:ALA328 3.8 26.7 0.0
HB3 A:LYS297 3.8 38.3 0.0
N A:LYS297 3.9 28.9 0.5
O A:HOH745 4.1 32.4 1.0
OG A:SER400 4.1 40.2 1.0
N A:GLY296 4.1 37.6 0.5
ND2 A:ASN325 4.2 34.6 1.0
CD A:PRO298 4.2 35.5 0.5
HB3 A:SER400 4.2 31.1 0.0
HB2 A:PRO295 4.2 38.2 0.0
HB2 A:ASN325 4.3 25.6 0.0
N A:LYS297 4.3 35.6 0.5
C A:PRO295 4.4 29.4 0.5
HB1 A:ALA328 4.4 26.4 0.0
O A:GLY296 4.4 33.4 0.5
HB2 A:SER400 4.4 30.2 0.0
HA A:PRO295 4.4 38.0 0.0
CB A:SER400 4.5 30.7 1.0
CB A:ALA328 4.5 26.2 1.0
HH12 A:ARG369 4.5 49.3 0.0
HD21 A:ASN325 4.6 35.1 0.0
HA2 A:GLY296 4.6 35.4 0.0
HB2 A:PRO295 4.6 26.2 0.0
MO A:MOO505 4.6 56.0 0.5
CD A:PRO298 4.7 35.3 0.5
HB3 A:LYS297 4.8 33.0 0.0
HB3 A:ALA328 4.8 26.0 0.0
CA A:GLY296 4.8 35.8 0.5
CB A:LYS297 4.8 38.5 0.5
HB3 A:PRO323 4.9 28.9 0.0
CB A:PRO295 4.9 38.6 0.5
HB3 A:PRO295 4.9 39.1 0.0
HG3 A:PRO298 4.9 39.8 0.0
O A:PRO295 5.0 28.3 0.5
C A:GLY296 5.0 39.9 0.5
HG2 A:PRO298 5.0 38.8 0.0
CA A:PRO295 5.0 37.4 0.5

Reference:

J.Krausze, T.W.Hercher, D.Zwerschke, M.L.Kirk, W.Blankenfeldt, R.R.Mendel, T.Kruse. The Functional Principle of Eukaryotic Molybdenum Insertases. Biochem. J. V. 475 1739 2018.
ISSN: ESSN 1470-8728
PubMed: 29717023
DOI: 10.1042/BCJ20170935
Page generated: Sun Oct 6 16:32:09 2024

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