Atomistry » Molybdenum » PDB 5nqd-6op3 » 6gb4
Atomistry »
  Molybdenum »
    PDB 5nqd-6op3 »
      6gb4 »

Molybdenum in PDB 6gb4: The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

Enzymatic activity of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

All present enzymatic activity of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gb4 was solved by J.Krausze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.29 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.310, 122.580, 133.000, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.8

Other elements in 6gb4:

The structure of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate (pdb code 6gb4). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gb4:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 6gb4

Go back to Molybdenum Binding Sites List in 6gb4
Molybdenum binding site 1 out of 2 in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo505

b:56.0
occ:0.50
 MO A:MOO505 0.0 56.0 0.5
O2 A:MOO505 1.9 57.8 0.5
O4 A:MOO505 1.9 47.9 0.5
O3 A:MOO505 1.9 58.2 0.5
O1 A:MOO505 1.9 45.6 0.5
HH22 A:ARG369 3.0 51.8 0.0
H A:GLY296 3.2 28.7 0.0
HH12 A:ARG369 3.4 49.3 0.0
HZ2 A:LYS294 3.4 87.5 0.0
O A:HOH622 3.4 43.6 1.0
HB3 A:SER400 3.5 31.1 0.0
HG A:SER400 3.5 40.6 0.0
H A:SER400 3.6 26.8 0.0
HZ2 A:LYS294 3.7 76.4 0.0
HG3 A:LYS294 3.7 49.4 0.0
HA A:PRO295 3.8 26.1 0.0
O2 A:MOO505 3.8 71.5 0.5
O1 A:MOO505 3.9 73.3 0.5
HG3 A:LYS294 3.9 40.5 0.0
HB3 A:PRO295 4.0 39.1 0.0
NH2 A:ARG369 4.0 52.1 1.0
HZ3 A:LYS294 4.1 88.7 0.0
OG A:SER400 4.1 40.2 1.0
N A:GLY296 4.2 28.3 0.5
NZ A:LYS294 4.2 88.2 0.5
CB A:SER400 4.3 30.7 1.0
HA A:PRO295 4.3 38.0 0.0
NH1 A:ARG369 4.3 49.7 1.0
HZ3 A:LYS294 4.3 77.5 0.0
NZ A:LYS294 4.5 77.0 0.5
N A:SER400 4.5 26.3 1.0
HA2 A:GLY296 4.5 28.7 0.0
HA A:MET399 4.5 35.1 0.0
MO A:MOO505 4.6 72.5 0.5
CA A:PRO295 4.6 25.5 0.5
HB3 A:PRO295 4.6 26.8 0.0
CZ A:ARG369 4.7 63.9 1.0
HZ1 A:LYS294 4.7 88.4 0.0
HH21 A:ARG369 4.7 52.9 0.0
HB2 A:PRO295 4.7 26.2 0.0
CG A:LYS294 4.7 49.6 0.5
CB A:PRO295 4.9 38.6 0.5
CB A:PRO295 4.9 26.4 0.5
CG A:LYS294 4.9 40.7 0.5
HD2 A:LYS294 4.9 53.2 0.0
HG2 A:LYS294 5.0 49.2 0.0
CA A:GLY296 5.0 28.5 0.5
C A:PRO295 5.0 29.4 0.5

Molybdenum binding site 2 out of 2 in 6gb4

Go back to Molybdenum Binding Sites List in 6gb4
Molybdenum binding site 2 out of 2 in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo505

b:72.5
occ:0.50
 MO A:MOO505 0.0 72.5 0.5
HA2 A:GLY296 1.5 28.7 0.0
O1 A:MOO505 1.9 73.3 0.5
O4 A:MOO505 1.9 68.3 0.5
O2 A:MOO505 1.9 71.5 0.5
O3 A:MOO505 1.9 71.8 0.5
CA A:GLY296 2.5 28.5 0.5
HA3 A:GLY296 2.7 27.9 0.0
O4 A:MOO505 2.9 47.9 0.5
H A:GLY296 3.1 37.8 0.0
H A:GLY296 3.2 28.7 0.0
HG A:SER400 3.2 40.6 0.0
N A:GLY296 3.3 28.3 0.5
HD22 A:ASN325 3.4 34.6 0.0
H A:LYS297 3.5 35.9 0.0
C A:GLY296 3.5 33.0 0.5
HD2 A:PRO298 3.6 35.3 0.0
HD2 A:PRO298 3.7 35.2 0.0
H A:LYS297 3.7 28.4 0.0
HD3 A:PRO298 3.8 36.1 0.0
HB2 A:ALA328 3.8 26.7 0.0
HB3 A:LYS297 3.8 38.3 0.0
N A:LYS297 3.9 28.9 0.5
O A:HOH745 4.1 32.4 1.0
OG A:SER400 4.1 40.2 1.0
N A:GLY296 4.1 37.6 0.5
ND2 A:ASN325 4.2 34.6 1.0
CD A:PRO298 4.2 35.5 0.5
HB3 A:SER400 4.2 31.1 0.0
HB2 A:PRO295 4.2 38.2 0.0
HB2 A:ASN325 4.3 25.6 0.0
N A:LYS297 4.3 35.6 0.5
C A:PRO295 4.4 29.4 0.5
HB1 A:ALA328 4.4 26.4 0.0
O A:GLY296 4.4 33.4 0.5
HB2 A:SER400 4.4 30.2 0.0
HA A:PRO295 4.4 38.0 0.0
CB A:SER400 4.5 30.7 1.0
CB A:ALA328 4.5 26.2 1.0
HH12 A:ARG369 4.5 49.3 0.0
HD21 A:ASN325 4.6 35.1 0.0
HA2 A:GLY296 4.6 35.4 0.0
HB2 A:PRO295 4.6 26.2 0.0
MO A:MOO505 4.6 56.0 0.5
CD A:PRO298 4.7 35.3 0.5
HB3 A:LYS297 4.8 33.0 0.0
HB3 A:ALA328 4.8 26.0 0.0
CA A:GLY296 4.8 35.8 0.5
CB A:LYS297 4.8 38.5 0.5
HB3 A:PRO323 4.9 28.9 0.0
CB A:PRO295 4.9 38.6 0.5
HB3 A:PRO295 4.9 39.1 0.0
HG3 A:PRO298 4.9 39.8 0.0
O A:PRO295 5.0 28.3 0.5
C A:GLY296 5.0 39.9 0.5
HG2 A:PRO298 5.0 38.8 0.0
CA A:PRO295 5.0 37.4 0.5

Reference:

J.Krausze, T.W.Hercher, D.Zwerschke, M.L.Kirk, W.Blankenfeldt, R.R.Mendel, T.Kruse. The Functional Principle of Eukaryotic Molybdenum Insertases. Biochem. J. V. 475 1739 2018.
ISSN: ESSN 1470-8728
PubMed: 29717023
DOI: 10.1042/BCJ20170935
Page generated: Sun Oct 6 16:32:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy