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Molybdenum in PDB 6gbc: The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

Enzymatic activity of The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

All present enzymatic activity of The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gbc was solved by J.Krausze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.77 / 1.59
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.840, 123.900, 131.540, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 19.4

Other elements in 6gbc:

The structure of The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate (pdb code 6gbc). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total only one binding site of Molybdenum was determined in the The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gbc:

Molybdenum binding site 1 out of 1 in 6gbc

Go back to Molybdenum Binding Sites List in 6gbc
Molybdenum binding site 1 out of 1 in the The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Structure of Variant R369A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo507

b:32.1
occ:0.70
 MO A:MOO507 0.0 32.1 0.7
O2 A:MOO507 1.8 23.8 0.7
O4 A:MOO507 1.9 32.9 0.7
O1 A:MOO507 1.9 29.0 0.7
O3 A:MOO507 1.9 32.4 0.7
HG A:SER328 2.8 29.7 0.0
H A:GLY296 3.1 33.1 0.0
HD3 A:PRO298 3.2 32.0 0.0
HD22 A:ASN325 3.2 31.5 0.0
HG A:SER400 3.3 32.7 0.0
H A:LYS297 3.5 32.5 0.0
OG A:SER328 3.8 29.3 1.0
CD A:PRO298 4.0 31.6 1.0
HB3 A:LYS297 4.0 36.0 0.0
HD2 A:PRO298 4.0 31.1 0.0
O A:HOH720 4.0 51.7 1.0
O A:HOH818 4.1 45.9 1.0
OG A:SER400 4.1 32.3 1.0
ND2 A:ASN325 4.1 31.4 1.0
N A:GLY296 4.1 33.0 1.0
O A:HOH651 4.1 31.6 1.0
HB3 A:SER400 4.2 29.6 0.0
HA A:PRO295 4.3 31.3 0.0
N A:LYS297 4.3 32.2 1.0
HB2 A:ASN325 4.3 24.9 0.0
HB2 A:SER400 4.4 28.7 0.0
O A:HOH658 4.4 67.2 1.0
HB3 A:SER328 4.4 24.4 0.0
HD21 A:ASN325 4.4 31.9 0.0
HG3 A:PRO298 4.4 36.5 0.0
CB A:SER400 4.5 29.2 1.0
HG2 A:PRO298 4.5 35.7 0.0
CG A:PRO298 4.6 36.1 1.0
HB2 A:PRO295 4.6 30.8 0.0
CB A:SER328 4.6 24.1 1.0
HB3 A:PRO323 4.7 26.0 0.0
HA2 A:GLY296 4.7 31.4 0.0
HB2 A:LYS297 4.8 36.5 0.0
CB A:LYS297 4.8 36.2 1.0
CA A:GLY296 4.8 31.8 1.0
CA A:PRO295 4.9 30.9 1.0
HB2 A:SER328 5.0 24.0 0.0
C A:GLY296 5.0 34.9 1.0

Reference:

J.Krausze, T.W.Hercher, D.Zwerschke, M.L.Kirk, W.Blankenfeldt, R.R.Mendel, T.Kruse. The Functional Principle of Eukaryotic Molybdenum Insertases. Biochem. J. V. 475 1739 2018.
ISSN: ESSN 1470-8728
PubMed: 29717023
DOI: 10.1042/BCJ20170935
Page generated: Sun Oct 6 16:32:11 2024

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