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Molybdenum in PDB 6gu5: Mosto Containing the Core Pom Clusters

Protein crystallography data

The structure of Mosto Containing the Core Pom Clusters, PDB code: 6gu5 was solved by U.Ermler, J.Poppe, S.Bruenle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.08 / 1.90
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 115.150, 115.150, 234.500, 90.00, 90.00, 120.00
R / Rfree (%) 17.1 / 19.2

Molybdenum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Molybdenum atom in the Mosto Containing the Core Pom Clusters (pdb code 6gu5). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 17 binding sites of Molybdenum where determined in the Mosto Containing the Core Pom Clusters, PDB code: 6gu5:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 17 in 6gu5

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Molybdenum binding site 1 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:43.9
occ:0.30
MO1 A:8M0301 0.0 43.9 0.3
O2 A:8M0301 1.8 45.3 0.3
O1 A:8M0301 1.9 44.7 0.3
O24 A:8M0301 1.9 38.4 0.3
O3 A:8M0301 1.9 45.9 0.3
O5 A:8M0301 2.1 45.1 0.3
O4 A:8M0301 2.3 45.4 0.3
ND1 A:HIS156 3.1 57.5 1.0
MO3 A:8M0301 3.3 46.2 0.3
MO2 A:8M0301 3.3 34.6 0.3
MO4 A:8M0301 3.5 41.6 0.3
O26 A:8M0301 3.5 44.9 0.3
CE1 A:HIS156 3.6 55.3 1.0
O6 A:8M0301 3.7 29.9 0.3
O10 A:8M0301 3.8 44.8 0.3
O7 A:8M0301 3.8 39.6 0.3
CB B:PRO151 4.0 19.4 1.0
O23 A:8M0304 4.0 35.3 0.6
MO8 A:8M0301 4.0 48.4 0.3
O20 A:8M0301 4.3 50.0 0.3
CG A:HIS156 4.4 52.9 1.0
O25 A:8M0301 4.5 41.0 0.3
O9 A:8M0301 4.6 46.7 0.3
CG B:PRO151 4.6 19.8 1.0
O11 A:8M0301 4.7 41.1 0.3
O22 A:8M0301 4.7 42.4 0.3
O8 A:8M0301 4.7 11.6 0.3
O B:HOH475 4.7 33.5 1.0
O27 A:8M0301 4.8 50.1 0.3
CB A:HIS156 4.8 32.9 1.0
O A:HOH519 4.9 47.3 1.0
NE2 A:HIS156 4.9 51.1 1.0

Molybdenum binding site 2 out of 17 in 6gu5

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Molybdenum binding site 2 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:34.6
occ:0.30
MO2 A:8M0301 0.0 34.6 0.3
O8 A:8M0301 1.7 11.6 0.3
O6 A:8M0301 1.7 29.9 0.3
O24 A:8M0301 2.0 38.4 0.3
O25 A:8M0301 2.0 41.0 0.3
O7 A:8M0301 2.2 39.6 0.3
O5 A:8M0301 2.3 45.1 0.3
MO1 A:8M0301 3.3 43.9 0.3
MO8 A:8M0301 3.4 48.4 0.3
MO4 A:8M0301 3.5 41.6 0.3
CB A:HIS156 3.6 32.9 1.0
ND1 A:HIS158 3.7 22.6 1.0
O2 A:8M0301 3.8 45.3 0.3
N A:HIS157 3.8 19.1 1.0
O4 A:8M0301 3.9 45.4 0.3
ND1 A:HIS156 4.0 57.5 1.0
O11 A:8M0301 4.0 41.1 0.3
ND1 A:HIS157 4.0 41.8 1.0
MO5 A:8M0301 4.1 42.0 0.3
O14 A:8M0301 4.1 45.6 0.3
O13 A:8M0301 4.1 45.5 0.3
CE1 A:HIS158 4.1 26.0 1.0
O22 A:8M0301 4.2 42.4 0.3
CB A:HIS157 4.2 27.6 1.0
CG B:PRO151 4.2 19.8 1.0
CG A:HIS156 4.3 52.9 1.0
O15 A:8M0301 4.4 46.8 0.3
O16 A:8M0301 4.4 50.3 0.3
CA A:HIS157 4.5 21.2 1.0
CG A:HIS157 4.5 36.9 1.0
O A:HOH519 4.5 47.3 1.0
CB B:PRO151 4.7 19.4 1.0
N A:HIS158 4.7 15.4 1.0
O A:TYR155 4.7 20.6 1.0
O1 A:8M0301 4.7 44.7 0.3
O3 A:8M0301 4.7 45.9 0.3
C A:HIS156 4.8 18.2 1.0
CA A:HIS156 4.8 22.6 1.0
O26 A:8M0301 4.8 44.9 0.3
O20 A:8M0301 4.9 50.0 0.3
CD B:PRO151 4.9 20.7 1.0
C A:HIS157 5.0 18.2 1.0

Molybdenum binding site 3 out of 17 in 6gu5

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Molybdenum binding site 3 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:46.2
occ:0.30
MO3 A:8M0301 0.0 46.2 0.3
O27 A:8M0301 1.8 50.1 0.3
O10 A:8M0301 1.9 44.8 0.3
O9 A:8M0301 1.9 46.7 0.3
O3 A:8M0301 2.0 45.9 0.3
O4 A:8M0301 2.1 45.4 0.3
O26 A:8M0301 2.2 44.9 0.3
MO1 A:8M0301 3.3 43.9 0.3
MO4 A:8M0301 3.3 41.6 0.3
O1 A:8M0301 3.7 44.7 0.3
O5 A:8M0301 3.8 45.1 0.3
O12 A:8M0301 3.9 42.5 0.3
MO6 A:8M0301 3.9 47.2 0.3
O18 A:8M0301 4.1 47.5 0.3
O20 A:8M0301 4.2 50.0 0.3
O19 A:8M0301 4.4 49.8 0.3
CB B:PRO151 4.5 19.4 1.0
O11 A:8M0301 4.5 41.1 0.3
O B:HOH475 4.6 33.5 1.0
O24 A:8M0301 4.6 38.4 0.3
O2 A:8M0301 4.8 45.3 0.3
O7 A:8M0301 4.9 39.6 0.3

Molybdenum binding site 4 out of 17 in 6gu5

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Molybdenum binding site 4 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:41.6
occ:0.30
MO4 A:8M0301 0.0 41.6 0.3
O12 A:8M0301 1.8 42.5 0.3
O4 A:8M0301 1.9 45.4 0.3
O7 A:8M0301 1.9 39.6 0.3
O11 A:8M0301 2.0 41.1 0.3
O26 A:8M0301 2.2 44.9 0.3
O5 A:8M0301 2.4 45.1 0.3
MO6 A:8M0301 3.2 47.2 0.3
MO3 A:8M0301 3.3 46.2 0.3
O24 A:8M0301 3.4 38.4 0.3
MO8 A:8M0301 3.5 48.4 0.3
O25 A:8M0301 3.5 41.0 0.3
MO1 A:8M0301 3.5 43.9 0.3
MO2 A:8M0301 3.5 34.6 0.3
O3 A:8M0301 3.6 45.9 0.3
O19 A:8M0301 3.6 49.8 0.3
O27 A:8M0301 3.7 50.1 0.3
CB B:PRO151 3.7 19.4 1.0
O20 A:8M0301 3.7 50.0 0.3
O21 A:8M0301 3.8 45.6 0.3
O14 A:8M0301 3.9 45.6 0.3
MO7 A:8M0301 4.0 44.8 0.3
CG B:PRO151 4.2 19.8 1.0
CE1 A:HIS158 4.3 26.0 1.0
CD B:PRO151 4.3 20.7 1.0
O16 A:8M0301 4.3 50.3 0.3
O17 A:8M0301 4.4 47.2 0.3
O8 A:8M0301 4.4 11.6 0.3
CA B:PRO151 4.5 21.9 1.0
N B:PRO151 4.6 19.2 1.0
ND1 A:HIS158 4.7 22.6 1.0
O1 A:8M0301 4.7 44.7 0.3
O18 A:8M0301 4.7 47.5 0.3
O9 A:8M0301 4.8 46.7 0.3
O10 A:8M0301 4.8 44.8 0.3
O2 A:8M0301 5.0 45.3 0.3
O6 A:8M0301 5.0 29.9 0.3

Molybdenum binding site 5 out of 17 in 6gu5

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Molybdenum binding site 5 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:42.0
occ:0.30
MO5 A:8M0301 0.0 42.0 0.3
O13 A:8M0301 1.8 45.5 0.3
O28 A:8M0301 1.8 43.3 0.3
O14 A:8M0301 1.9 45.6 0.3
O15 A:8M0301 2.0 46.8 0.3
O25 A:8M0301 2.2 41.0 0.3
O16 A:8M0301 2.2 50.3 0.3
MO7 A:8M0301 3.2 44.8 0.3
MO8 A:8M0301 3.4 48.4 0.3
O23 A:8M0301 3.7 47.9 0.3
O11 A:8M0301 3.8 41.1 0.3
CD1 B:LEU176 3.8 48.2 1.0
O22 A:8M0301 4.0 42.4 0.3
MO2 A:8M0301 4.1 34.6 0.3
CE1 A:HIS158 4.2 26.0 1.0
O7 A:8M0301 4.4 39.6 0.3
ND1 A:HIS157 4.4 41.8 1.0
N B:LEU131 4.4 47.3 1.0
CB A:HIS157 4.4 27.6 1.0
O8 A:8M0301 4.4 11.6 0.3
O21 A:8M0301 4.5 45.6 0.3
CG B:LEU176 4.5 40.0 1.0
O5 A:8M0301 4.6 45.1 0.3
O17 A:8M0301 4.7 47.2 0.3
O6 A:8M0301 4.7 29.9 0.3
CG A:HIS157 4.8 36.9 1.0
ND1 A:HIS158 4.8 22.6 1.0
CZ B:PHE180 4.8 41.6 1.0
CE2 B:PHE180 4.8 41.0 1.0
CA B:LEU131 4.9 57.1 1.0
CB B:LEU131 4.9 57.9 1.0
O20 A:8M0301 5.0 50.0 0.3

Molybdenum binding site 6 out of 17 in 6gu5

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Molybdenum binding site 6 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:47.2
occ:0.30
MO6 A:8M0301 0.0 47.2 0.3
O18 A:8M0301 1.8 47.5 0.3
O19 A:8M0301 1.9 49.8 0.3
O26 A:8M0301 2.0 44.9 0.3
O17 A:8M0301 2.0 47.2 0.3
O20 A:8M0301 2.2 50.0 0.3
O11 A:8M0301 2.3 41.1 0.3
MO4 A:8M0301 3.2 41.6 0.3
MO7 A:8M0301 3.3 44.8 0.3
MO8 A:8M0301 3.4 48.4 0.3
O21 A:8M0301 3.7 45.6 0.3
O16 A:8M0301 3.7 50.3 0.3
O12 A:8M0301 3.9 42.5 0.3
MO3 A:8M0301 3.9 46.2 0.3
O5 A:8M0301 4.0 45.1 0.3
O B:HOH436 4.0 27.6 1.0
CA B:GLY127 4.0 68.9 1.0
O9 A:8M0301 4.0 46.7 0.3
O3 A:8M0301 4.2 45.9 0.3
O4 A:8M0301 4.2 45.4 0.3
O27 A:8M0301 4.2 50.1 0.3
O B:HOH467 4.4 34.6 1.0
O14 A:8M0301 4.6 45.6 0.3
N B:GLY127 4.6 52.1 1.0
CA B:GLY130 4.6 55.1 1.0
O23 A:8M0301 4.7 47.9 0.3
O25 A:8M0301 4.8 41.0 0.3
O22 A:8M0301 4.8 42.4 0.3
O7 A:8M0301 4.8 39.6 0.3
O B:VAL126 4.9 34.3 1.0

Molybdenum binding site 7 out of 17 in 6gu5

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Molybdenum binding site 7 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:44.8
occ:0.30
MO7 A:8M0301 0.0 44.8 0.3
O21 A:8M0301 1.8 45.6 0.3
O23 A:8M0301 1.9 47.9 0.3
O14 A:8M0301 2.0 45.6 0.3
O17 A:8M0301 2.0 47.2 0.3
O11 A:8M0301 2.1 41.1 0.3
O16 A:8M0301 2.2 50.3 0.3
MO5 A:8M0301 3.2 42.0 0.3
MO6 A:8M0301 3.3 47.2 0.3
O28 A:8M0301 3.5 43.3 0.3
MO8 A:8M0301 3.5 48.4 0.3
O25 A:8M0301 3.6 41.0 0.3
O19 A:8M0301 3.7 49.8 0.3
CD1 B:LEU176 3.9 48.2 1.0
O20 A:8M0301 3.9 50.0 0.3
MO4 A:8M0301 4.0 41.6 0.3
O A:HOH499 4.4 34.1 1.0
O7 A:8M0301 4.4 39.6 0.3
CB B:PHE146 4.5 17.3 1.0
O13 A:8M0301 4.5 45.5 0.3
O26 A:8M0301 4.5 44.9 0.3
O12 A:8M0301 4.5 42.5 0.3
CD2 B:PHE146 4.5 22.2 1.0
CE1 A:HIS158 4.6 26.0 1.0
O5 A:8M0301 4.7 45.1 0.3
CG B:PHE146 4.7 18.1 1.0
O15 A:8M0301 4.8 46.8 0.3
O B:HOH436 4.8 27.6 1.0
O18 A:8M0301 4.9 47.5 0.3
O B:SER147 4.9 19.1 1.0
O22 A:8M0301 4.9 42.4 0.3

Molybdenum binding site 8 out of 17 in 6gu5

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Molybdenum binding site 8 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:48.4
occ:0.30
MO8 A:8M0301 0.0 48.4 0.3
O22 A:8M0301 1.8 42.4 0.3
O20 A:8M0301 1.9 50.0 0.3
O16 A:8M0301 1.9 50.3 0.3
O5 A:8M0301 2.1 45.1 0.3
O25 A:8M0301 2.2 41.0 0.3
O11 A:8M0301 2.4 41.1 0.3
O26 A:8M0301 3.3 44.9 0.3
MO2 A:8M0301 3.4 34.6 0.3
MO5 A:8M0301 3.4 42.0 0.3
MO6 A:8M0301 3.4 47.2 0.3
MO4 A:8M0301 3.5 41.6 0.3
O14 A:8M0301 3.5 45.6 0.3
MO7 A:8M0301 3.5 44.8 0.3
O15 A:8M0301 3.5 46.8 0.3
CA B:GLY130 3.5 55.1 1.0
O17 A:8M0301 3.6 47.2 0.3
O7 A:8M0301 3.7 39.6 0.3
O6 A:8M0301 3.9 29.9 0.3
N B:LEU131 3.9 47.3 1.0
O3 A:8M0301 4.0 45.9 0.3
MO1 A:8M0301 4.0 43.9 0.3
O2 A:8M0301 4.2 45.3 0.3
C B:GLY130 4.2 36.9 1.0
O24 A:8M0301 4.3 38.4 0.3
O4 A:8M0301 4.3 45.4 0.3
O18 A:8M0301 4.4 47.5 0.3
O28 A:8M0301 4.6 43.3 0.3
O13 A:8M0301 4.7 45.5 0.3
O21 A:8M0301 4.8 45.6 0.3
O23 A:8M0301 4.8 47.9 0.3
O8 A:8M0301 4.8 11.6 0.3
N B:GLY130 4.8 59.8 1.0
O19 A:8M0301 5.0 49.8 0.3

Molybdenum binding site 9 out of 17 in 6gu5

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Molybdenum binding site 9 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo304

b:28.7
occ:0.60
MO1 A:8M0304 0.0 28.7 0.6
O2 A:8M0304 1.8 29.9 0.6
O1 A:8M0304 1.9 24.0 0.6
O24 A:8M0304 1.9 29.8 0.6
O3 A:8M0304 2.0 30.4 0.6
O5 A:8M0304 2.2 24.8 0.6
O4 A:8M0304 2.3 25.6 0.6
MO3 A:8M0304 3.1 34.7 0.6
MO2 A:8M0304 3.3 32.9 0.6
MO4 A:8M0304 3.6 30.2 0.6
O26 A:8M0304 3.7 32.5 0.6
O6 A:8M0304 3.7 30.8 0.6
O7 A:8M0304 3.8 32.6 0.6
OH A:TYR127 4.0 20.6 1.0
CA A:GLY110 4.1 12.0 1.0
O27 A:8M0304 4.1 48.4 0.6
MO8 A:8M0304 4.1 34.6 0.6
NE2 A:GLN111 4.3 21.3 1.0
O22 A:8M0304 4.4 36.0 0.6
O25 A:8M0304 4.5 29.1 0.6
O20 A:8M0304 4.6 30.9 0.6
O9 A:8M0304 4.6 35.6 0.6
O8 A:8M0304 4.7 19.5 0.6
CE1 A:HIS114 4.8 23.9 1.0
C A:GLY110 4.8 17.0 1.0
CZ A:TYR127 4.8 20.5 1.0
O11 A:8M0304 4.9 30.9 0.6
CE2 A:TYR127 4.9 18.7 1.0
O A:SER107 4.9 16.7 1.0
N A:GLY110 4.9 12.1 1.0
CA A:SER107 4.9 17.7 0.5
CA A:SER107 5.0 17.7 0.5

Molybdenum binding site 10 out of 17 in 6gu5

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Molybdenum binding site 10 out of 17 in the Mosto Containing the Core Pom Clusters


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of Mosto Containing the Core Pom Clusters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo304

b:32.9
occ:0.60
MO2 A:8M0304 0.0 32.9 0.6
O6 A:8M0304 1.7 30.8 0.6
O8 A:8M0304 1.8 19.5 0.6
O24 A:8M0304 1.9 29.8 0.6
O25 A:8M0304 2.0 29.1 0.6
O7 A:8M0304 2.2 32.6 0.6
O5 A:8M0304 2.3 24.8 0.6
MO8 A:8M0304 3.3 34.6 0.6
MO1 A:8M0304 3.3 28.7 0.6
MO4 A:8M0304 3.4 30.2 0.6
O A:ALA106 3.5 17.2 1.0
O2 A:8M0304 3.6 29.9 0.6
O22 A:8M0304 3.6 36.0 0.6
O4 A:8M0304 3.8 25.6 0.6
MO5 A:8M0304 3.8 38.3 0.6
O13 A:8M0304 3.8 32.3 0.6
O11 A:8M0304 3.9 30.9 0.6
C A:ALA106 3.9 21.1 1.0
O15 A:8M0304 3.9 40.2 0.6
CB A:ALA106 4.0 19.2 1.0
CE1 A:HIS130 4.2 32.8 1.0
OG A:SER150 4.2 20.9 1.0
O A:HOH405 4.3 53.4 1.0
O16 A:8M0304 4.3 25.8 0.6
CB A:SER150 4.3 17.0 1.0
N A:SER107 4.4 15.7 1.0
O14 A:8M0304 4.4 30.6 0.6
O3 A:8M0304 4.5 30.4 0.6
ND1 A:HIS130 4.5 30.6 1.0
CA A:SER107 4.6 17.7 0.5
CA A:ALA106 4.6 20.2 1.0
CA A:SER107 4.6 17.7 0.5
OH A:TYR127 4.7 20.6 1.0
O1 A:8M0304 4.7 24.0 0.6
O26 A:8M0304 4.7 32.5 0.6
CA A:GLY110 4.8 12.0 1.0
N A:GLY110 4.8 12.1 1.0
O20 A:8M0304 4.9 30.9 0.6

Reference:

J.Poppe, S.Brunle, R.Hail, K.Wiesemann, K.Schneider, U.Ermler. The Molybdenum Storage Protein: A Soluble Atp Hydrolysis-Dependent Molybdate Pump. Febs J. V. 285 4602 2018.
ISSN: ISSN 1742-4658
PubMed: 30367742
DOI: 10.1111/FEBS.14684
Page generated: Tue Dec 15 05:20:29 2020

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