Molybdenum in PDB 6guj: Molybdenum Storage Protein with Two Occupied Atp Binding Sites

The structure of Molybdenum Storage Protein with Two Occupied Atp Binding Sites, PDB code: 6guj was solved by U.Ermler, J.Poppe, S.Bruenle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.77 / 2.10
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	115.150, 115.150, 234.500, 90.00, 90.00, 120.00
R / Rfree (%)	17.9 / 21.4

The structure of Molybdenum Storage Protein with Two Occupied Atp Binding Sites also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Molybdenum atom in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites (pdb code 6guj). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 24 binding sites of Molybdenum where determined in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites, PDB code: 6guj:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:30.5 occ:0.53 MO1 B:8M0302 0.0 30.5 0.5 O2 B:8M0302 1.8 30.8 0.7 O1 B:8M0302 1.9 38.8 0.7 O3 B:8M0302 1.9 34.1 0.6 O24 B:8M0302 1.9 25.9 0.7 O5 B:8M0302 2.1 25.8 0.7 O4 B:8M0302 2.3 31.1 0.4 ND1 A:HIS156 3.2 49.5 1.0 MO3 B:8M0302 3.3 35.4 0.5 MO2 B:8M0302 3.3 26.2 0.5 MO4 B:8M0302 3.5 31.9 0.5 O26 B:8M0302 3.5 33.8 0.6 CE1 A:HIS156 3.7 48.3 1.0 O10 B:8M0302 3.8 43.0 0.7 O7 B:8M0302 3.8 28.5 0.5 O6 B:8M0302 3.8 26.8 0.7 O23 A:8M0303 4.0 29.4 0.8 MO8 B:8M0302 4.1 30.7 0.5 CB B:PRO151 4.1 19.5 1.0 CG A:HIS156 4.3 45.1 1.0 O20 B:8M0302 4.4 34.7 0.5 O B:HOH455 4.4 29.0 1.0 O25 B:8M0302 4.5 28.0 0.5 O9 B:8M0302 4.5 41.4 0.9 O22 B:8M0302 4.7 24.0 1.0 O11 B:8M0302 4.7 26.9 0.6 CG B:PRO151 4.7 19.0 1.0 O27 B:8M0302 4.8 47.9 0.8 O8 B:8M0302 4.8 25.6 1.0 CB A:HIS156 4.8 29.2 1.0 NE2 A:HIS156 4.9 42.5 1.0

Molybdenum binding site 2 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:26.2 occ:0.52 MO2 B:8M0302 0.0 26.2 0.5 O8 B:8M0302 1.7 25.6 1.0 O6 B:8M0302 1.7 26.8 0.7 O24 B:8M0302 1.9 25.9 0.7 O25 B:8M0302 2.0 28.0 0.5 O7 B:8M0302 2.2 28.5 0.5 O5 B:8M0302 2.3 25.8 0.7 MO8 B:8M0302 3.3 30.7 0.5 MO1 B:8M0302 3.3 30.5 0.5 MO4 B:8M0302 3.5 31.9 0.5 CB A:HIS156 3.6 29.2 1.0 O2 B:8M0302 3.8 30.8 0.7 O4 B:8M0302 3.9 31.1 0.4 ND1 A:HIS158 3.9 19.5 1.0 ND1 A:HIS156 3.9 49.5 1.0 O11 B:8M0302 4.0 26.9 0.6 MO5 B:8M0302 4.0 33.8 0.6 N A:HIS157 4.0 20.9 1.0 O22 B:8M0302 4.0 24.0 1.0 O13 B:8M0302 4.0 34.9 0.4 O14 B:8M0302 4.1 30.4 0.4 CG B:PRO151 4.1 19.0 1.0 CD2 A:HIS157 4.2 33.7 1.0 CG A:HIS156 4.2 45.1 1.0 O15 B:8M0302 4.2 53.0 0.8 CB A:HIS157 4.3 23.3 1.0 O16 B:8M0302 4.4 25.0 0.4 CE1 A:HIS158 4.4 23.5 1.0 CG A:HIS157 4.6 31.8 1.0 CB B:PRO151 4.6 19.5 1.0 O3 B:8M0302 4.7 34.1 0.6 CA A:HIS157 4.7 25.7 1.0 O1 B:8M0302 4.7 38.8 0.7 O26 B:8M0302 4.8 33.8 0.6 CA A:HIS156 4.8 20.9 1.0 C A:HIS156 4.9 19.6 1.0 O20 B:8M0302 4.9 34.7 0.5 N A:HIS158 4.9 18.9 1.0 CD B:PRO151 4.9 16.2 1.0 O A:TYR155 4.9 28.7 1.0

Molybdenum binding site 3 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:35.4 occ:0.49 MO3 B:8M0302 0.0 35.4 0.5 O27 B:8M0302 1.8 47.9 0.8 O10 B:8M0302 1.9 43.0 0.7 O9 B:8M0302 1.9 41.4 0.9 O3 B:8M0302 2.0 34.1 0.6 O4 B:8M0302 2.1 31.1 0.4 O26 B:8M0302 2.2 33.8 0.6 MO1 B:8M0302 3.3 30.5 0.5 MO4 B:8M0302 3.3 31.9 0.5 O1 B:8M0302 3.6 38.8 0.7 O5 B:8M0302 3.8 25.8 0.7 O12 B:8M0302 3.8 37.2 0.7 MO6 B:8M0302 3.9 29.1 0.5 NZ B:LYS153 4.2 54.5 1.0 O18 B:8M0302 4.3 32.1 0.6 O20 B:8M0302 4.3 34.7 0.5 O19 B:8M0302 4.5 31.1 0.7 O11 B:8M0302 4.5 26.9 0.6 O B:HOH455 4.6 29.0 1.0 CB B:PRO151 4.6 19.5 1.0 O24 B:8M0302 4.6 25.9 0.7 O2 B:8M0302 4.7 30.8 0.7 O7 B:8M0302 4.9 28.5 0.5 O B:HOH422 4.9 36.1 1.0

Molybdenum binding site 4 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:31.9 occ:0.52 MO4 B:8M0302 0.0 31.9 0.5 O12 B:8M0302 1.8 37.2 0.7 O4 B:8M0302 1.9 31.1 0.4 O7 B:8M0302 1.9 28.5 0.5 O11 B:8M0302 2.0 26.9 0.6 O26 B:8M0302 2.2 33.8 0.6 O5 B:8M0302 2.4 25.8 0.7 MO6 B:8M0302 3.2 29.1 0.5 MO3 B:8M0302 3.3 35.4 0.5 O25 B:8M0302 3.4 28.0 0.5 MO8 B:8M0302 3.4 30.7 0.5 O24 B:8M0302 3.4 25.9 0.7 MO2 B:8M0302 3.5 26.2 0.5 MO1 B:8M0302 3.5 30.5 0.5 O3 B:8M0302 3.5 34.1 0.6 O27 B:8M0302 3.6 47.9 0.8 O19 B:8M0302 3.7 31.1 0.7 O20 B:8M0302 3.7 34.7 0.5 CB B:PRO151 3.7 19.5 1.0 O21 B:8M0302 3.9 32.2 0.6 O14 B:8M0302 4.0 30.4 0.4 MO7 B:8M0302 4.1 30.4 0.4 CG B:PRO151 4.2 19.0 1.0 O16 B:8M0302 4.3 25.0 0.4 CD B:PRO151 4.4 16.2 1.0 O8 B:8M0302 4.4 25.6 1.0 O17 B:8M0302 4.4 29.7 0.7 CE1 A:HIS158 4.5 23.5 1.0 CA B:PRO151 4.6 19.6 1.0 N B:PRO151 4.6 18.8 1.0 O1 B:8M0302 4.6 38.8 0.7 O9 B:8M0302 4.7 41.4 0.9 ND1 A:HIS158 4.8 19.5 1.0 O18 B:8M0302 4.8 32.1 0.6 O10 B:8M0302 4.8 43.0 0.7 O B:MET149 5.0 23.7 1.0 O6 B:8M0302 5.0 26.8 0.7 O2 B:8M0302 5.0 30.8 0.7

Molybdenum binding site 5 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:33.8 occ:0.55 MO5 B:8M0302 0.0 33.8 0.6 O13 B:8M0302 1.8 34.9 0.4 O28 B:8M0302 1.8 34.9 0.6 O14 B:8M0302 1.9 30.4 0.4 O15 B:8M0302 2.0 53.0 0.8 O25 B:8M0302 2.2 28.0 0.5 O16 B:8M0302 2.2 25.0 0.4 MO7 B:8M0302 3.2 30.4 0.4 MO8 B:8M0302 3.4 30.7 0.5 O23 B:8M0302 3.7 32.3 0.5 O11 B:8M0302 3.8 26.9 0.6 CD1 B:LEU176 3.8 41.1 1.0 O22 B:8M0302 4.0 24.0 1.0 MO2 B:8M0302 4.0 26.2 0.5 CE1 A:HIS158 4.1 23.5 1.0 CA B:GLY128 4.2 92.7 1.0 CE2 B:PHE180 4.2 63.0 1.0 O8 B:8M0302 4.2 25.6 1.0 CB A:HIS157 4.3 23.3 1.0 CZ B:PHE180 4.3 63.6 1.0 O7 B:8M0302 4.4 28.5 0.5 N B:ALA129 4.4 79.9 1.0 CD2 A:HIS157 4.4 33.7 1.0 CG B:LEU176 4.5 40.1 1.0 O6 B:8M0302 4.5 26.8 0.7 O21 B:8M0302 4.5 32.2 0.6 N B:GLY128 4.5 84.4 1.0 ND1 A:HIS158 4.6 19.5 1.0 O5 B:8M0302 4.6 25.8 0.7 CG A:HIS157 4.7 31.8 1.0 C B:GLY128 4.7 96.5 1.0 O17 B:8M0302 4.7 29.7 0.7 N B:GLY130 4.8 62.1 1.0 O20 B:8M0302 5.0 34.7 0.5

Molybdenum binding site 6 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:29.1 occ:0.50 MO6 B:8M0302 0.0 29.1 0.5 O18 B:8M0302 1.8 32.1 0.6 O19 B:8M0302 1.9 31.1 0.7 O26 B:8M0302 2.0 33.8 0.6 O17 B:8M0302 2.0 29.7 0.7 O20 B:8M0302 2.2 34.7 0.5 O11 B:8M0302 2.3 26.9 0.6 MO4 B:8M0302 3.2 31.9 0.5 MO7 B:8M0302 3.3 30.4 0.4 MO8 B:8M0302 3.4 30.7 0.5 O21 B:8M0302 3.6 32.2 0.6 O12 B:8M0302 3.8 37.2 0.7 O16 B:8M0302 3.8 25.0 0.4 O B:HOH497 3.9 26.8 1.0 MO3 B:8M0302 3.9 35.4 0.5 O5 B:8M0302 4.0 25.8 0.7 O9 B:8M0302 4.0 41.4 0.9 O3 B:8M0302 4.2 34.1 0.6 O27 B:8M0302 4.2 47.9 0.8 O4 B:8M0302 4.2 31.1 0.4 CA B:GLY127 4.4 60.4 1.0 O14 B:8M0302 4.6 30.4 0.4 N B:GLY128 4.6 84.4 1.0 O23 B:8M0302 4.7 32.3 0.5 O25 B:8M0302 4.8 28.0 0.5 O B:VAL126 4.8 36.0 1.0 O7 B:8M0302 4.8 28.5 0.5 O22 B:8M0302 4.8 24.0 1.0

Molybdenum binding site 7 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:30.4 occ:0.44 MO7 B:8M0302 0.0 30.4 0.4 O21 B:8M0302 1.8 32.2 0.6 O23 B:8M0302 1.9 32.3 0.5 O14 B:8M0302 2.0 30.4 0.4 O17 B:8M0302 2.0 29.7 0.7 O11 B:8M0302 2.2 26.9 0.6 O16 B:8M0302 2.2 25.0 0.4 MO5 B:8M0302 3.2 33.8 0.6 MO6 B:8M0302 3.3 29.1 0.5 MO8 B:8M0302 3.5 30.7 0.5 O25 B:8M0302 3.6 28.0 0.5 O28 B:8M0302 3.6 34.9 0.6 O19 B:8M0302 3.7 31.1 0.7 O20 B:8M0302 3.9 34.7 0.5 CD1 B:LEU176 4.0 41.1 1.0 MO4 B:8M0302 4.1 31.9 0.5 N B:GLY128 4.2 84.4 1.0 O A:HOH474 4.3 35.5 1.0 N B:ALA129 4.4 79.9 1.0 O26 B:8M0302 4.5 33.8 0.6 O7 B:8M0302 4.5 28.5 0.5 O13 B:8M0302 4.5 34.9 0.4 O12 B:8M0302 4.5 37.2 0.7 CB B:PHE146 4.6 17.0 1.0 CD2 B:PHE146 4.6 17.2 1.0 CE1 A:HIS158 4.6 23.5 1.0 O5 B:8M0302 4.7 25.8 0.7 O15 B:8M0302 4.7 53.0 0.8 O B:HOH497 4.8 26.8 1.0 CA B:GLY128 4.8 92.7 1.0 O18 B:8M0302 4.8 32.1 0.6 CG B:PHE146 4.8 16.9 1.0 O22 B:8M0302 4.9 24.0 1.0 CB B:ALA129 4.9 66.3 1.0 O B:SER147 4.9 19.7 1.0

Molybdenum binding site 8 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:30.7 occ:0.52 MO8 B:8M0302 0.0 30.7 0.5 O22 B:8M0302 1.8 24.0 1.0 O20 B:8M0302 1.9 34.7 0.5 O16 B:8M0302 1.9 25.0 0.4 O5 B:8M0302 2.1 25.8 0.7 O25 B:8M0302 2.1 28.0 0.5 O11 B:8M0302 2.4 26.9 0.6 O26 B:8M0302 3.3 33.8 0.6 MO2 B:8M0302 3.3 26.2 0.5 MO5 B:8M0302 3.4 33.8 0.6 MO6 B:8M0302 3.4 29.1 0.5 MO4 B:8M0302 3.4 31.9 0.5 N B:GLY128 3.5 84.4 1.0 MO7 B:8M0302 3.5 30.4 0.4 O15 B:8M0302 3.5 53.0 0.8 O14 B:8M0302 3.5 30.4 0.4 O17 B:8M0302 3.6 29.7 0.7 O7 B:8M0302 3.7 28.5 0.5 O6 B:8M0302 3.8 26.8 0.7 CA B:GLY128 3.9 92.7 1.0 O3 B:8M0302 4.0 34.1 0.6 MO1 B:8M0302 4.1 30.5 0.5 O2 B:8M0302 4.3 30.8 0.7 O24 B:8M0302 4.3 25.9 0.7 O4 B:8M0302 4.3 31.1 0.4 O18 B:8M0302 4.5 32.1 0.6 C B:GLY127 4.5 59.1 1.0 O28 B:8M0302 4.6 34.9 0.6 O8 B:8M0302 4.7 25.6 1.0 O13 B:8M0302 4.7 34.9 0.4 O23 B:8M0302 4.7 32.3 0.5 O21 B:8M0302 4.7 32.2 0.6 CA B:GLY127 4.9 60.4 1.0 O19 B:8M0302 5.0 31.1 0.7

Molybdenum binding site 9 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo303 b:54.3 occ:0.60 MO B:MO306 3.4 85.7 0.3 MO B:MO304 3.4 57.0 0.6 CG B:PRO135 3.5 32.6 1.0 OG B:SER132 3.8 54.7 1.0 MO B:MO305 3.8 51.9 0.2 CD B:PRO135 4.2 30.6 1.0 CG B:PRO124 4.5 21.3 1.0 CG1 B:VAL134 4.6 46.7 1.0 CG1 B:VAL126 4.6 35.3 1.0 CB B:PRO135 4.7 31.5 1.0 CB B:PRO124 4.9 26.5 1.0

Molybdenum binding site 10 out of 24 in the Molybdenum Storage Protein with Two Occupied Atp Binding Sites


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of Molybdenum Storage Protein with Two Occupied Atp Binding Sites within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo304 b:57.0 occ:0.57 MO B:MO303 3.4 54.3 0.6 MO B:MO305 4.1 51.9 0.2 MO B:MO306 4.2 85.7 0.3 CB B:PRO124 4.5 26.5 1.0 CG B:PRO124 4.8 21.3 1.0

J.Poppe, S.Brunle, R.Hail, K.Wiesemann, K.Schneider, U.Ermler. The Molybdenum Storage Protein: A Soluble Atp Hydrolysis-Dependent Molybdate Pump. Febs J. V. 285 4602 2018.
ISSN: ISSN 1742-4658
PubMed: 30367742
DOI: 10.1111/FEBS.14684