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Molybdenum in PDB 6gx4: The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions

Protein crystallography data

The structure of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions, PDB code: 6gx4 was solved by J.Poppe, S.Bruenle, R.Hail, E.Ermler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.41 / 1.90
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 114.270, 114.270, 234.140, 90.00, 90.00, 120.00
R / Rfree (%) 17.4 / 20.5

Other elements in 6gx4:

The structure of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Molybdenum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Molybdenum atom in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions (pdb code 6gx4). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 19 binding sites of Molybdenum where determined in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions, PDB code: 6gx4:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 19 in 6gx4

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Molybdenum binding site 1 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:47.8
occ:0.82
MO1 B:FUQ302 0.0 47.8 0.8
O25 B:FUQ302 1.7 53.1 0.0
O15 B:FUQ302 1.7 46.8 0.0
O11 B:FUQ302 1.8 49.0 0.0
O12 B:FUQ302 1.9 49.1 0.0
O13 B:FUQ302 1.9 64.3 1.0
O14 B:FUQ302 1.9 53.1 0.7
MO2 B:FUQ302 3.3 53.9 0.8
MO4 B:FUQ302 3.4 42.0 0.6
O24 B:FUQ302 3.6 80.0 0.5
O22 B:FUQ302 3.6 45.9 0.5
O35 B:FUQ302 3.8 91.1 1.0
O43 B:FUQ302 3.8 56.3 1.0
O44 B:FUQ302 3.8 36.6 1.0
O41 B:FUQ302 3.9 48.3 0.4
O45 B:FUQ302 3.9 76.5 1.0
O23 B:FUQ302 4.0 69.9 1.0
NE2 A:HIS157 4.2 35.5 1.0
CB A:PRO103 4.4 25.2 1.0
CG A:PRO103 4.4 24.9 1.0
O55 B:FUQ302 4.7 0.8 1.0
O14 A:FV2303 4.8 94.7 0.8

Molybdenum binding site 2 out of 19 in 6gx4

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Molybdenum binding site 2 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:53.9
occ:0.77
MO2 B:FUQ302 0.0 53.9 0.8
O25 B:FUQ302 1.7 53.1 0.0
O35 B:FUQ302 1.7 91.1 1.0
O22 B:FUQ302 1.9 45.9 0.5
O23 B:FUQ302 1.9 69.9 1.0
O21 B:FUQ302 1.9 61.1 0.1
O24 B:FUQ302 1.9 80.0 0.5
MO1 B:FUQ302 3.3 47.8 0.8
MO3 B:FUQ302 3.3 98.0 1.0
O32 B:FUQ302 3.5 0.1 1.0
O14 B:FUQ302 3.5 53.1 0.7
O34 B:FUQ302 3.6 96.3 1.0
O33 B:FUQ302 3.7 93.5 1.0
O11 B:FUQ302 3.9 49.0 0.0
O15 B:FUQ302 3.9 46.8 0.0
CD2 A:HIS157 4.0 40.4 1.0
O55 B:FUQ302 4.0 0.8 1.0
NE2 A:HIS157 4.1 35.5 1.0
O29 A:FV2303 4.3 82.9 0.8
CG A:HIS156 4.3 68.4 1.0
O14 A:FV2303 4.3 94.7 0.8
CB A:HIS156 4.4 33.5 1.0
O13 B:FUQ302 4.4 64.3 1.0
ND1 A:HIS156 4.6 75.5 1.0
CD2 A:HIS156 4.6 73.4 1.0
O B:ALA129 4.7 65.7 1.0
CB A:PRO103 4.7 25.2 1.0
CG A:PRO103 4.8 24.9 1.0
CA B:GLY130 4.9 98.8 1.0
O45 B:FUQ302 4.9 76.5 1.0
O17 A:FV2303 5.0 85.0 0.8

Molybdenum binding site 3 out of 19 in 6gx4

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Molybdenum binding site 3 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:98.0
occ:1.00
MO3 B:FUQ302 0.0 98.0 1.0
O35 B:FUQ302 1.7 91.1 1.0
O55 B:FUQ302 1.7 0.8 1.0
O32 B:FUQ302 1.9 0.1 1.0
O31 B:FUQ302 1.9 0.3 1.0
O34 B:FUQ302 1.9 96.3 1.0
O33 B:FUQ302 1.9 93.5 1.0
MO2 B:FUQ302 3.3 53.9 0.8
MO5 B:FUQ302 3.4 83.2 0.9
O21 B:FUQ302 3.4 61.1 0.1
O52 B:FUQ302 3.4 90.4 0.6
O24 B:FUQ302 3.4 80.0 0.5
O25 B:FUQ302 3.8 53.1 0.0
O45 B:FUQ302 3.8 76.5 1.0
OG B:SER132 3.9 50.2 1.0
O53 B:FUQ302 4.0 95.6 0.9
O54 B:FUQ302 4.0 41.2 1.0
N B:LEU131 4.2 86.9 1.0
CA B:GLY130 4.3 98.8 1.0
N B:GLY130 4.4 96.4 1.0
N B:SER132 4.4 71.1 1.0
C B:GLY130 4.5 96.1 1.0
O15 B:FUQ302 4.7 46.8 0.0
O23 B:FUQ302 4.8 69.9 1.0
CA B:SER132 4.9 58.3 1.0
CB B:SER132 4.9 19.8 1.0
C B:ALA129 5.0 82.9 1.0

Molybdenum binding site 4 out of 19 in 6gx4

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Molybdenum binding site 4 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:42.0
occ:0.59
MO4 B:FUQ302 0.0 42.0 0.6
O45 B:FUQ302 1.7 76.5 1.0
O15 B:FUQ302 1.7 46.8 0.0
O42 B:FUQ302 1.8 47.5 0.1
O41 B:FUQ302 1.9 48.3 0.4
O44 B:FUQ302 1.9 36.6 1.0
O43 B:FUQ302 1.9 56.3 1.0
MO5 B:FUQ302 3.3 83.2 0.9
MO1 B:FUQ302 3.4 47.8 0.8
O12 B:FUQ302 3.4 49.1 0.0
O13 B:FUQ302 3.4 64.3 1.0
O53 B:FUQ302 3.5 95.6 0.9
O51 B:FUQ302 3.6 90.2 0.5
O54 B:FUQ302 3.8 41.2 1.0
O55 B:FUQ302 3.8 0.8 1.0
O25 B:FUQ302 4.0 53.1 0.0
O14 B:FUQ302 4.2 53.1 0.7
O35 B:FUQ302 4.7 91.1 1.0
O24 B:FUQ302 5.0 80.0 0.5

Molybdenum binding site 5 out of 19 in 6gx4

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Molybdenum binding site 5 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:83.2
occ:0.93
MO5 B:FUQ302 0.0 83.2 0.9
O45 B:FUQ302 1.7 76.5 1.0
O55 B:FUQ302 1.7 0.8 1.0
O52 B:FUQ302 1.8 90.4 0.6
O51 B:FUQ302 1.9 90.2 0.5
O53 B:FUQ302 1.9 95.6 0.9
O54 B:FUQ302 1.9 41.2 1.0
O42 B:FUQ302 3.3 47.5 0.1
MO4 B:FUQ302 3.3 42.0 0.6
MO3 B:FUQ302 3.4 98.0 1.0
O31 B:FUQ302 3.5 0.3 1.0
O43 B:FUQ302 3.6 56.3 1.0
O34 B:FUQ302 3.6 96.3 1.0
O44 B:FUQ302 3.8 36.6 1.0
O15 B:FUQ302 3.9 46.8 0.0
N B:SER132 4.0 71.1 1.0
O35 B:FUQ302 4.0 91.1 1.0
CA B:SER132 4.3 58.3 1.0
O33 B:FUQ302 4.4 93.5 1.0
O25 B:FUQ302 4.9 53.1 0.0

Molybdenum binding site 6 out of 19 in 6gx4

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Molybdenum binding site 6 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:0.6
occ:0.72
MO1 B:FUQ303 0.0 0.6 0.7
O15 B:FUQ303 1.7 1.0 0.3
O25 B:FUQ303 1.7 0.9 0.5
O11 B:FUQ303 1.9 98.0 0.9
O12 B:FUQ303 1.9 0.4 0.1
O14 B:FUQ303 1.9 0.3 1.0
O13 B:FUQ303 1.9 99.5 1.0
MO2 B:FUQ303 3.3 0.0 1.0
MO4 B:FUQ303 3.3 0.6 0.7
O23 B:FUQ303 3.4 0.3 1.0
NZ B:LYS153 3.5 51.8 1.0
O41 B:FUQ303 3.5 0.3 0.0
O22 B:FUQ303 3.6 0.5 0.9
O44 B:FUQ303 3.7 0.2 1.0
O B:HOH437 3.7 44.6 1.0
O35 B:FUQ303 4.0 0.4 0.6
O45 B:FUQ303 4.0 0.8 0.8
O24 B:FUQ303 4.1 0.1 1.0
O43 B:FUQ303 4.1 0.7 0.9
CG A:PRO131 4.3 26.7 1.0
CB A:PRO131 4.7 26.7 1.0
CE B:LYS153 4.8 54.5 1.0
O55 B:FUQ303 4.9 0.7 1.0

Molybdenum binding site 7 out of 19 in 6gx4

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Molybdenum binding site 7 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:0.0
occ:1.00
MO2 B:FUQ303 0.0 0.0 1.0
O25 B:FUQ303 1.7 0.9 0.5
O35 B:FUQ303 1.7 0.4 0.6
O22 B:FUQ303 1.9 0.5 0.9
O21 B:FUQ303 1.9 0.5 0.5
O23 B:FUQ303 1.9 0.3 1.0
O24 B:FUQ303 1.9 0.1 1.0
MO1 B:FUQ303 3.3 0.6 0.7
MO3 B:FUQ303 3.3 97.7 1.0
O32 B:FUQ303 3.5 96.3 0.4
O B:HOH437 3.5 44.6 1.0
O13 B:FUQ303 3.5 99.5 1.0
O11 B:FUQ303 3.5 98.0 0.9
O15 B:FUQ303 3.7 1.0 0.3
O34 B:FUQ303 3.7 85.5 0.7
O55 B:FUQ303 3.7 0.7 1.0
O14 B:FUQ303 3.7 0.3 1.0
O33 B:FUQ303 4.0 93.6 1.0
O45 B:FUQ303 4.5 0.8 0.8
O44 B:FUQ303 4.9 0.2 1.0

Molybdenum binding site 8 out of 19 in 6gx4

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Molybdenum binding site 8 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:97.7
occ:0.96
MO3 B:FUQ303 0.0 97.7 1.0
O35 B:FUQ303 1.7 0.4 0.6
O55 B:FUQ303 1.7 0.7 1.0
O32 B:FUQ303 1.9 96.3 0.4
O31 B:FUQ303 1.9 95.2 0.3
O34 B:FUQ303 1.9 85.5 0.7
O33 B:FUQ303 1.9 93.6 1.0
MO2 B:FUQ303 3.3 0.0 1.0
MO5 B:FUQ303 3.3 0.9 0.7
O21 B:FUQ303 3.4 0.5 0.5
O52 B:FUQ303 3.4 0.3 0.2
O24 B:FUQ303 3.4 0.1 1.0
O B:HOH437 3.5 44.6 1.0
O54 B:FUQ303 3.8 0.8 1.0
O45 B:FUQ303 3.8 0.8 0.8
O53 B:FUQ303 3.9 90.9 1.0
O25 B:FUQ303 4.0 0.9 0.5
O23 B:FUQ303 4.8 0.3 1.0
CA B:GLY127 4.8 53.8 1.0
O15 B:FUQ303 4.8 1.0 0.3

Molybdenum binding site 9 out of 19 in 6gx4

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Molybdenum binding site 9 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:0.6
occ:0.69
MO4 B:FUQ303 0.0 0.6 0.7
O45 B:FUQ303 1.7 0.8 0.8
O15 B:FUQ303 1.7 1.0 0.3
O42 B:FUQ303 1.8 0.1 0.6
O41 B:FUQ303 1.9 0.3 0.0
O43 B:FUQ303 1.9 0.7 0.9
O44 B:FUQ303 1.9 0.2 1.0
MO5 B:FUQ303 3.3 0.9 0.7
MO1 B:FUQ303 3.3 0.6 0.7
O12 B:FUQ303 3.5 0.4 0.1
O B:HOH437 3.5 44.6 1.0
O51 B:FUQ303 3.5 0.8 1.0
O25 B:FUQ303 3.6 0.9 0.5
O55 B:FUQ303 3.8 0.7 1.0
O B:HOH402 3.8 37.5 1.0
O54 B:FUQ303 3.8 0.8 1.0
O13 B:FUQ303 3.9 99.5 1.0
O14 B:FUQ303 3.9 0.3 1.0
NZ B:LYS153 4.0 51.8 1.0
O53 B:FUQ303 4.2 90.9 1.0
CE B:LYS153 4.3 54.5 1.0
O35 B:FUQ303 4.5 0.4 0.6
CB B:ALA129 4.5 68.7 1.0
CB B:PRO151 4.9 26.7 1.0
O B:HOH522 5.0 25.5 1.0

Molybdenum binding site 10 out of 19 in 6gx4

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Molybdenum binding site 10 out of 19 in the The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of The Molybdenum Storage Protein: with Atp/MN2+ and with Pom Clusters Formed Under in Vitro Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:0.9
occ:0.73
MO5 B:FUQ303 0.0 0.9 0.7
O45 B:FUQ303 1.7 0.8 0.8
O55 B:FUQ303 1.7 0.7 1.0
O52 B:FUQ303 1.8 0.3 0.2
O51 B:FUQ303 1.9 0.8 1.0
O53 B:FUQ303 1.9 90.9 1.0
O54 B:FUQ303 1.9 0.8 1.0
O44 B:FUQ303 3.2 0.2 1.0
MO4 B:FUQ303 3.3 0.6 0.7
MO3 B:FUQ303 3.3 97.7 1.0
O42 B:FUQ303 3.4 0.1 0.6
O31 B:FUQ303 3.5 95.2 0.3
O34 B:FUQ303 3.6 85.5 0.7
O33 B:FUQ303 3.7 93.6 1.0
O35 B:FUQ303 3.8 0.4 0.6
O B:HOH437 3.9 44.6 1.0
O43 B:FUQ303 4.0 0.7 0.9
O15 B:FUQ303 4.0 1.0 0.3
CB B:ALA129 4.1 68.7 1.0
N B:ALA129 4.1 83.6 1.0
N B:GLY128 4.3 92.5 1.0
O25 B:FUQ303 4.7 0.9 0.5
CA B:ALA129 4.7 79.1 1.0
CA B:GLY127 4.8 53.8 1.0

Reference:

J.Poppe, S.Brunle, R.Hail, K.Wiesemann, K.Schneider, U.Ermler. The Molybdenum Storage Protein: A Soluble Atp Hydrolysis-Dependent Molybdate Pump. Febs J. V. 285 4602 2018.
ISSN: ISSN 1742-4658
PubMed: 30367742
DOI: 10.1111/FEBS.14684
Page generated: Tue Dec 15 05:20:30 2020

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