Atomistry » Molybdenum » PDB 5nqd-6op3 » 6h74
Atomistry »
  Molybdenum »
    PDB 5nqd-6op3 »
      6h74 »

Molybdenum in PDB 6h74: The Molybdenum Storage Protein - L131H

Protein crystallography data

The structure of The Molybdenum Storage Protein - L131H, PDB code: 6h74 was solved by U.Ermler, S.Bruenle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.48 / 1.80
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 114.270, 114.270, 234.140, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / 20

Other elements in 6h74:

The structure of The Molybdenum Storage Protein - L131H also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Molybdenum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Molybdenum atom in the The Molybdenum Storage Protein - L131H (pdb code 6h74). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 20 binding sites of Molybdenum where determined in the The Molybdenum Storage Protein - L131H, PDB code: 6h74:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 1 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:0.4
occ:0.82
MO1 B:FUQ302 0.0 0.4 0.8
O15 B:FUQ302 1.8 0.8 0.0
O14 B:FUQ302 1.9 0.3 0.0
O25 B:FUQ302 1.9 94.5 0.0
O11 B:FUQ302 1.9 0.3 0.0
O12 B:FUQ302 2.0 0.3 0.0
O13 B:FUQ302 2.1 0.3 0.0
O41 B:FUQ302 3.4 0.3 0.0
MO4 B:FUQ302 3.5 0.7 1.0
O22 B:FUQ302 3.7 89.6 0.0
NZ B:LYS153 3.7 56.7 1.0
O44 B:FUQ302 3.7 0.2 0.0
MO2 B:FUQ302 3.7 86.3 0.7
O24 B:FUQ302 3.8 82.9 0.0
O43 B:FUQ302 4.0 0.3 0.0
O B:HOH544 4.0 53.7 1.0
O35 B:FUQ302 4.1 77.0 0.0
O45 B:FUQ302 4.1 89.3 0.0
O B:HOH414 4.2 57.2 1.0
O23 B:FUQ302 4.4 89.0 0.0
CE B:LYS153 4.5 55.3 1.0
O55 B:FUQ302 4.8 73.2 0.0
CB A:PRO131 5.0 34.2 1.0

Molybdenum binding site 2 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 2 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:86.3
occ:0.65
MO2 B:FUQ302 0.0 86.3 0.7
O35 B:FUQ302 1.7 77.0 0.0
O23 B:FUQ302 1.9 89.0 0.0
O22 B:FUQ302 1.9 89.6 0.0
O21 B:FUQ302 1.9 89.0 0.0
O24 B:FUQ302 1.9 82.9 0.0
O25 B:FUQ302 2.0 94.5 0.0
O31 B:FUQ302 3.1 69.3 0.0
MO3 B:FUQ302 3.1 68.8 0.5
O33 B:FUQ302 3.3 69.3 0.0
O14 B:FUQ302 3.4 0.3 0.0
O55 B:FUQ302 3.6 73.2 0.0
MO1 B:FUQ302 3.7 0.4 0.8
O32 B:FUQ302 3.8 53.1 0.0
O11 B:FUQ302 3.9 0.3 0.0
O15 B:FUQ302 4.1 0.8 0.0
CB B:SER104 4.5 34.0 1.0
OD2 B:ASP108 4.6 63.2 1.0
O13 B:FUQ302 4.7 0.3 0.0
O B:GLN101 4.8 25.8 1.0

Molybdenum binding site 3 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 3 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:68.8
occ:0.48
MO3 B:FUQ302 0.0 68.8 0.5
O35 B:FUQ302 1.6 77.0 0.0
O55 B:FUQ302 1.7 73.2 0.0
O33 B:FUQ302 1.7 69.3 0.0
O31 B:FUQ302 1.9 69.3 0.0
O32 B:FUQ302 1.9 53.1 0.0
OD2 B:ASP108 2.1 63.2 1.0
CG B:ASP108 3.1 44.7 1.0
MO2 B:FUQ302 3.1 86.3 0.7
MO5 B:FUQ302 3.3 74.3 0.8
OD1 B:ASP108 3.3 43.8 1.0
O52 B:FUQ302 3.4 76.2 0.0
O21 B:FUQ302 3.5 89.0 0.0
O24 B:FUQ302 3.5 82.9 0.0
O25 B:FUQ302 3.8 94.5 0.0
O54 B:FUQ302 4.0 76.2 0.0
O53 B:FUQ302 4.0 76.2 0.0
O B:HOH402 4.0 37.5 1.0
O45 B:FUQ302 4.2 89.3 0.0
O23 B:FUQ302 4.4 89.0 0.0
CB B:ASP108 4.4 20.7 1.0
O B:SER104 4.5 21.8 1.0
CB B:SER104 4.5 34.0 1.0
O15 B:FUQ302 4.8 0.8 0.0
C B:SER104 4.8 24.8 1.0
O44 B:FUQ302 4.9 0.2 0.0
O22 B:FUQ302 4.9 89.6 0.0

Molybdenum binding site 4 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 4 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:0.7
occ:0.99
MO4 B:FUQ302 0.0 0.7 1.0
O45 B:FUQ302 1.8 89.3 0.0
O42 B:FUQ302 1.8 0.3 0.0
O15 B:FUQ302 1.8 0.8 0.0
O41 B:FUQ302 1.9 0.3 0.0
O44 B:FUQ302 1.9 0.2 0.0
O43 B:FUQ302 1.9 0.3 0.0
O54 B:FUQ302 3.5 76.2 0.0
MO1 B:FUQ302 3.5 0.4 0.8
MO5 B:FUQ302 3.5 74.3 0.8
O13 B:FUQ302 3.6 0.3 0.0
O12 B:FUQ302 3.8 0.3 0.0
O51 B:FUQ302 3.8 76.2 0.0
O55 B:FUQ302 3.9 73.2 0.0
O25 B:FUQ302 4.0 94.5 0.0
O14 B:FUQ302 4.3 0.3 0.0
O53 B:FUQ302 4.6 76.2 0.0
O35 B:FUQ302 4.9 77.0 0.0

Molybdenum binding site 5 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 5 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:74.3
occ:0.76
MO5 B:FUQ302 0.0 74.3 0.8
O55 B:FUQ302 1.8 73.2 0.0
O52 B:FUQ302 1.8 76.2 0.0
O45 B:FUQ302 1.9 89.3 0.0
O53 B:FUQ302 1.9 76.2 0.0
O51 B:FUQ302 1.9 76.2 0.0
O54 B:FUQ302 2.1 76.2 0.0
MO3 B:FUQ302 3.3 68.8 0.5
MO4 B:FUQ302 3.5 0.7 1.0
O32 B:FUQ302 3.6 53.1 0.0
O35 B:FUQ302 3.7 77.0 0.0
O44 B:FUQ302 3.7 0.2 0.0
O42 B:FUQ302 3.8 0.3 0.0
O33 B:FUQ302 3.9 69.3 0.0
O15 B:FUQ302 3.9 0.8 0.0
OD2 B:ASP108 4.3 63.2 1.0
O43 B:FUQ302 4.5 0.3 0.0
O25 B:FUQ302 4.8 94.5 0.0
CG B:ASP108 4.9 44.7 1.0
O24 B:FUQ302 4.9 82.9 0.0

Molybdenum binding site 6 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 6 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:91.9
occ:0.75
MO1 B:GWW303 0.0 91.9 0.8
O1 B:GWW303 1.8 88.5 0.0
O5 B:GWW303 1.9 87.2 0.0
O6 B:GWW303 1.9 87.2 0.0
O3 B:GWW303 2.0 87.2 0.0
O4 B:GWW303 2.0 87.2 0.0
NE2 B:HIS131 4.2 58.4 1.0
CD2 B:HIS131 4.6 57.0 1.0
CE1 B:HIS131 4.7 56.3 1.0

Molybdenum binding site 7 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 7 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:50.1
occ:0.78
MO1 A:FUQ301 0.0 50.1 0.8
O11 A:FUQ301 1.7 50.4 0.0
O15 A:FUQ301 1.7 56.5 0.0
O25 A:FUQ301 1.8 49.3 0.0
O14 A:FUQ301 1.9 57.5 0.0
O12 A:FUQ301 2.1 50.4 0.0
O13 A:FUQ301 2.1 42.2 0.0
ND1 A:HIS157 3.0 64.8 1.0
CE1 A:HIS157 3.2 68.7 1.0
MO4 A:FUQ301 3.3 60.7 0.8
O24 A:FUQ301 3.3 53.9 0.0
O41 A:FUQ301 3.4 61.2 0.0
MO2 A:FUQ301 3.4 47.9 0.7
O22 A:FUQ301 3.6 32.0 0.0
O43 A:FUQ301 3.6 61.2 0.0
O44 A:FUQ301 3.7 61.2 0.0
O35 A:FUQ301 3.9 62.2 0.0
O45 A:FUQ301 3.9 52.6 0.0
CB A:HIS156 4.1 46.0 1.0
CG A:HIS156 4.4 53.4 1.0
CG A:HIS157 4.4 56.4 1.0
O23 A:FUQ301 4.4 48.1 0.0
CD2 A:HIS156 4.5 53.9 1.0
NE2 A:HIS157 4.5 62.7 1.0
N A:HIS157 4.8 27.5 1.0
O54 A:FUQ301 4.8 47.1 0.0
CG A:PRO103 5.0 22.7 1.0

Molybdenum binding site 8 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 8 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:47.9
occ:0.72
MO2 A:FUQ301 0.0 47.9 0.7
O25 A:FUQ301 1.8 49.3 0.0
O22 A:FUQ301 1.8 32.0 0.0
O21 A:FUQ301 1.9 48.1 0.0
O23 A:FUQ301 1.9 48.1 0.0
O24 A:FUQ301 1.9 53.9 0.0
O35 A:FUQ301 1.9 62.2 0.0
O32 A:FUQ301 3.1 93.0 0.0
O34 A:FUQ301 3.2 89.8 0.0
CB A:HIS156 3.2 46.0 1.0
MO3 A:FUQ301 3.4 77.2 1.0
MO1 A:FUQ301 3.4 50.1 0.8
O11 A:FUQ301 3.6 50.4 0.0
N A:HIS157 3.8 27.5 1.0
O15 A:FUQ301 3.8 56.5 0.0
O14 A:FUQ301 3.9 57.5 0.0
CG A:HIS156 4.1 53.4 1.0
ND1 A:HIS157 4.1 64.8 1.0
ND1 A:HIS158 4.1 30.0 1.0
O13 A:FUQ301 4.2 42.2 0.0
O33 A:FUQ301 4.2 94.8 0.0
CD2 A:HIS156 4.3 53.9 1.0
O55 A:FUQ301 4.3 71.2 0.0
CB A:HIS157 4.4 38.9 1.0
CA A:HIS156 4.5 30.8 1.0
CG B:PRO151 4.5 29.4 1.0
CE1 A:HIS158 4.6 33.0 1.0
C A:HIS156 4.6 30.1 1.0
CA A:HIS157 4.6 29.0 1.0
O54 A:FUQ301 4.7 47.1 0.0
CG A:HIS157 4.8 56.4 1.0
O A:HOH402 4.8 36.5 1.0
O45 A:FUQ301 4.8 52.6 0.0
CB B:PRO151 4.9 26.5 1.0
O A:TYR155 4.9 22.6 1.0
O31 A:FUQ301 4.9 94.4 0.0
N A:HIS158 5.0 25.9 1.0

Molybdenum binding site 9 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 9 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:77.2
occ:0.97
MO3 A:FUQ301 0.0 77.2 1.0
O34 A:FUQ301 1.7 89.8 0.0
O31 A:FUQ301 1.8 94.4 0.0
O32 A:FUQ301 1.8 93.0 0.0
O33 A:FUQ301 1.9 94.8 0.0
O35 A:FUQ301 1.9 62.2 0.0
O55 A:FUQ301 2.0 71.2 0.0
MO2 A:FUQ301 3.4 47.9 0.7
O54 A:FUQ301 3.5 47.1 0.0
O21 A:FUQ301 3.6 48.1 0.0
MO5 A:FUQ301 3.7 47.0 0.7
C B:GLY127 3.7 57.6 1.0
O B:GLY127 3.7 62.4 1.0
N B:GLY128 3.8 58.4 1.0
CA B:GLY128 3.9 57.8 1.0
O A:HOH402 3.9 36.5 1.0
O24 A:FUQ301 4.1 53.9 0.0
O45 A:FUQ301 4.1 52.6 0.0
O25 A:FUQ301 4.2 49.3 0.0
O52 A:FUQ301 4.4 36.5 0.0
O23 A:FUQ301 4.4 48.1 0.0
CA B:GLY127 4.5 43.9 1.0
O53 A:FUQ301 4.6 47.1 0.0
CE1 A:HIS158 4.6 33.0 1.0
O15 A:FUQ301 4.9 56.5 0.0

Molybdenum binding site 10 out of 20 in 6h74

Go back to Molybdenum Binding Sites List in 6h74
Molybdenum binding site 10 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of The Molybdenum Storage Protein - L131H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo301

b:60.7
occ:0.85
MO4 A:FUQ301 0.0 60.7 0.8
O15 A:FUQ301 1.7 56.5 0.0
O45 A:FUQ301 1.8 52.6 0.0
O42 A:FUQ301 1.8 61.2 0.0
O44 A:FUQ301 1.9 61.2 0.0
O41 A:FUQ301 1.9 61.2 0.0
O43 A:FUQ301 1.9 61.2 0.0
MO1 A:FUQ301 3.3 50.1 0.8
O51 A:FUQ301 3.3 47.1 0.0
MO5 A:FUQ301 3.3 47.0 0.7
O54 A:FUQ301 3.5 47.1 0.0
O14 A:FUQ301 3.5 57.5 0.0
O12 A:FUQ301 3.6 50.4 0.0
O13 A:FUQ301 3.9 42.2 0.0
O53 A:FUQ301 4.0 47.1 0.0
O25 A:FUQ301 4.0 49.3 0.0
O55 A:FUQ301 4.2 71.2 0.0
NE2 B:HIS131 4.3 58.4 1.0
CA B:GLY130 4.5 45.7 1.0
CD2 B:HIS131 4.6 57.0 1.0
O35 A:FUQ301 4.6 62.2 0.0
CE1 B:HIS131 4.6 56.3 1.0
C B:GLY130 4.8 48.5 1.0
CE1 A:HIS157 4.9 68.7 1.0
O11 A:FUQ301 4.9 50.4 0.0
O B:GLY130 5.0 48.7 1.0

Reference:

S.Brunle, J.Poppe, R.Hail, U.Demmer, U.Ermler. The Molybdenum Storage Protein - A Bionanolab For Creating Experimentally Alterable Polyoxomolybdate Clusters. J. Inorg. Biochem. V. 189 172 2018.
ISSN: ISSN 1873-3344
PubMed: 30278367
DOI: 10.1016/J.JINORGBIO.2018.09.011
Page generated: Tue Dec 15 05:20:34 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy