Molybdenum in PDB 6h74: The Molybdenum Storage Protein - L131H

The structure of The Molybdenum Storage Protein - L131H, PDB code: 6h74 was solved by U.Ermler, S.Bruenle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.48 / 1.80
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	114.270, 114.270, 234.140, 90.00, 90.00, 120.00
R / Rfree (%)	17.8 / 20

The structure of The Molybdenum Storage Protein - L131H also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Molybdenum atom in the The Molybdenum Storage Protein - L131H (pdb code 6h74). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 20 binding sites of Molybdenum where determined in the The Molybdenum Storage Protein - L131H, PDB code: 6h74:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:0.4 occ:0.82 MO1 B:FUQ302 0.0 0.4 0.8 O15 B:FUQ302 1.8 0.8 0.0 O14 B:FUQ302 1.9 0.3 0.0 O25 B:FUQ302 1.9 94.5 0.0 O11 B:FUQ302 1.9 0.3 0.0 O12 B:FUQ302 2.0 0.3 0.0 O13 B:FUQ302 2.1 0.3 0.0 O41 B:FUQ302 3.4 0.3 0.0 MO4 B:FUQ302 3.5 0.7 1.0 O22 B:FUQ302 3.7 89.6 0.0 NZ B:LYS153 3.7 56.7 1.0 O44 B:FUQ302 3.7 0.2 0.0 MO2 B:FUQ302 3.7 86.3 0.7 O24 B:FUQ302 3.8 82.9 0.0 O43 B:FUQ302 4.0 0.3 0.0 O B:HOH544 4.0 53.7 1.0 O35 B:FUQ302 4.1 77.0 0.0 O45 B:FUQ302 4.1 89.3 0.0 O B:HOH414 4.2 57.2 1.0 O23 B:FUQ302 4.4 89.0 0.0 CE B:LYS153 4.5 55.3 1.0 O55 B:FUQ302 4.8 73.2 0.0 CB A:PRO131 5.0 34.2 1.0

Molybdenum binding site 2 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:86.3 occ:0.65 MO2 B:FUQ302 0.0 86.3 0.7 O35 B:FUQ302 1.7 77.0 0.0 O23 B:FUQ302 1.9 89.0 0.0 O22 B:FUQ302 1.9 89.6 0.0 O21 B:FUQ302 1.9 89.0 0.0 O24 B:FUQ302 1.9 82.9 0.0 O25 B:FUQ302 2.0 94.5 0.0 O31 B:FUQ302 3.1 69.3 0.0 MO3 B:FUQ302 3.1 68.8 0.5 O33 B:FUQ302 3.3 69.3 0.0 O14 B:FUQ302 3.4 0.3 0.0 O55 B:FUQ302 3.6 73.2 0.0 MO1 B:FUQ302 3.7 0.4 0.8 O32 B:FUQ302 3.8 53.1 0.0 O11 B:FUQ302 3.9 0.3 0.0 O15 B:FUQ302 4.1 0.8 0.0 CB B:SER104 4.5 34.0 1.0 OD2 B:ASP108 4.6 63.2 1.0 O13 B:FUQ302 4.7 0.3 0.0 O B:GLN101 4.8 25.8 1.0

Molybdenum binding site 3 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:68.8 occ:0.48 MO3 B:FUQ302 0.0 68.8 0.5 O35 B:FUQ302 1.6 77.0 0.0 O55 B:FUQ302 1.7 73.2 0.0 O33 B:FUQ302 1.7 69.3 0.0 O31 B:FUQ302 1.9 69.3 0.0 O32 B:FUQ302 1.9 53.1 0.0 OD2 B:ASP108 2.1 63.2 1.0 CG B:ASP108 3.1 44.7 1.0 MO2 B:FUQ302 3.1 86.3 0.7 MO5 B:FUQ302 3.3 74.3 0.8 OD1 B:ASP108 3.3 43.8 1.0 O52 B:FUQ302 3.4 76.2 0.0 O21 B:FUQ302 3.5 89.0 0.0 O24 B:FUQ302 3.5 82.9 0.0 O25 B:FUQ302 3.8 94.5 0.0 O54 B:FUQ302 4.0 76.2 0.0 O53 B:FUQ302 4.0 76.2 0.0 O B:HOH402 4.0 37.5 1.0 O45 B:FUQ302 4.2 89.3 0.0 O23 B:FUQ302 4.4 89.0 0.0 CB B:ASP108 4.4 20.7 1.0 O B:SER104 4.5 21.8 1.0 CB B:SER104 4.5 34.0 1.0 O15 B:FUQ302 4.8 0.8 0.0 C B:SER104 4.8 24.8 1.0 O44 B:FUQ302 4.9 0.2 0.0 O22 B:FUQ302 4.9 89.6 0.0

Molybdenum binding site 4 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:0.7 occ:0.99 MO4 B:FUQ302 0.0 0.7 1.0 O45 B:FUQ302 1.8 89.3 0.0 O42 B:FUQ302 1.8 0.3 0.0 O15 B:FUQ302 1.8 0.8 0.0 O41 B:FUQ302 1.9 0.3 0.0 O44 B:FUQ302 1.9 0.2 0.0 O43 B:FUQ302 1.9 0.3 0.0 O54 B:FUQ302 3.5 76.2 0.0 MO1 B:FUQ302 3.5 0.4 0.8 MO5 B:FUQ302 3.5 74.3 0.8 O13 B:FUQ302 3.6 0.3 0.0 O12 B:FUQ302 3.8 0.3 0.0 O51 B:FUQ302 3.8 76.2 0.0 O55 B:FUQ302 3.9 73.2 0.0 O25 B:FUQ302 4.0 94.5 0.0 O14 B:FUQ302 4.3 0.3 0.0 O53 B:FUQ302 4.6 76.2 0.0 O35 B:FUQ302 4.9 77.0 0.0

Molybdenum binding site 5 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:74.3 occ:0.76 MO5 B:FUQ302 0.0 74.3 0.8 O55 B:FUQ302 1.8 73.2 0.0 O52 B:FUQ302 1.8 76.2 0.0 O45 B:FUQ302 1.9 89.3 0.0 O53 B:FUQ302 1.9 76.2 0.0 O51 B:FUQ302 1.9 76.2 0.0 O54 B:FUQ302 2.1 76.2 0.0 MO3 B:FUQ302 3.3 68.8 0.5 MO4 B:FUQ302 3.5 0.7 1.0 O32 B:FUQ302 3.6 53.1 0.0 O35 B:FUQ302 3.7 77.0 0.0 O44 B:FUQ302 3.7 0.2 0.0 O42 B:FUQ302 3.8 0.3 0.0 O33 B:FUQ302 3.9 69.3 0.0 O15 B:FUQ302 3.9 0.8 0.0 OD2 B:ASP108 4.3 63.2 1.0 O43 B:FUQ302 4.5 0.3 0.0 O25 B:FUQ302 4.8 94.5 0.0 CG B:ASP108 4.9 44.7 1.0 O24 B:FUQ302 4.9 82.9 0.0

Molybdenum binding site 6 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo303 b:91.9 occ:0.75 MO1 B:GWW303 0.0 91.9 0.8 O1 B:GWW303 1.8 88.5 0.0 O5 B:GWW303 1.9 87.2 0.0 O6 B:GWW303 1.9 87.2 0.0 O3 B:GWW303 2.0 87.2 0.0 O4 B:GWW303 2.0 87.2 0.0 NE2 B:HIS131 4.2 58.4 1.0 CD2 B:HIS131 4.6 57.0 1.0 CE1 B:HIS131 4.7 56.3 1.0

Molybdenum binding site 7 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo301 b:50.1 occ:0.78 MO1 A:FUQ301 0.0 50.1 0.8 O11 A:FUQ301 1.7 50.4 0.0 O15 A:FUQ301 1.7 56.5 0.0 O25 A:FUQ301 1.8 49.3 0.0 O14 A:FUQ301 1.9 57.5 0.0 O12 A:FUQ301 2.1 50.4 0.0 O13 A:FUQ301 2.1 42.2 0.0 ND1 A:HIS157 3.0 64.8 1.0 CE1 A:HIS157 3.2 68.7 1.0 MO4 A:FUQ301 3.3 60.7 0.8 O24 A:FUQ301 3.3 53.9 0.0 O41 A:FUQ301 3.4 61.2 0.0 MO2 A:FUQ301 3.4 47.9 0.7 O22 A:FUQ301 3.6 32.0 0.0 O43 A:FUQ301 3.6 61.2 0.0 O44 A:FUQ301 3.7 61.2 0.0 O35 A:FUQ301 3.9 62.2 0.0 O45 A:FUQ301 3.9 52.6 0.0 CB A:HIS156 4.1 46.0 1.0 CG A:HIS156 4.4 53.4 1.0 CG A:HIS157 4.4 56.4 1.0 O23 A:FUQ301 4.4 48.1 0.0 CD2 A:HIS156 4.5 53.9 1.0 NE2 A:HIS157 4.5 62.7 1.0 N A:HIS157 4.8 27.5 1.0 O54 A:FUQ301 4.8 47.1 0.0 CG A:PRO103 5.0 22.7 1.0

Molybdenum binding site 8 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo301 b:47.9 occ:0.72 MO2 A:FUQ301 0.0 47.9 0.7 O25 A:FUQ301 1.8 49.3 0.0 O22 A:FUQ301 1.8 32.0 0.0 O21 A:FUQ301 1.9 48.1 0.0 O23 A:FUQ301 1.9 48.1 0.0 O24 A:FUQ301 1.9 53.9 0.0 O35 A:FUQ301 1.9 62.2 0.0 O32 A:FUQ301 3.1 93.0 0.0 O34 A:FUQ301 3.2 89.8 0.0 CB A:HIS156 3.2 46.0 1.0 MO3 A:FUQ301 3.4 77.2 1.0 MO1 A:FUQ301 3.4 50.1 0.8 O11 A:FUQ301 3.6 50.4 0.0 N A:HIS157 3.8 27.5 1.0 O15 A:FUQ301 3.8 56.5 0.0 O14 A:FUQ301 3.9 57.5 0.0 CG A:HIS156 4.1 53.4 1.0 ND1 A:HIS157 4.1 64.8 1.0 ND1 A:HIS158 4.1 30.0 1.0 O13 A:FUQ301 4.2 42.2 0.0 O33 A:FUQ301 4.2 94.8 0.0 CD2 A:HIS156 4.3 53.9 1.0 O55 A:FUQ301 4.3 71.2 0.0 CB A:HIS157 4.4 38.9 1.0 CA A:HIS156 4.5 30.8 1.0 CG B:PRO151 4.5 29.4 1.0 CE1 A:HIS158 4.6 33.0 1.0 C A:HIS156 4.6 30.1 1.0 CA A:HIS157 4.6 29.0 1.0 O54 A:FUQ301 4.7 47.1 0.0 CG A:HIS157 4.8 56.4 1.0 O A:HOH402 4.8 36.5 1.0 O45 A:FUQ301 4.8 52.6 0.0 CB B:PRO151 4.9 26.5 1.0 O A:TYR155 4.9 22.6 1.0 O31 A:FUQ301 4.9 94.4 0.0 N A:HIS158 5.0 25.9 1.0

Molybdenum binding site 9 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo301 b:77.2 occ:0.97 MO3 A:FUQ301 0.0 77.2 1.0 O34 A:FUQ301 1.7 89.8 0.0 O31 A:FUQ301 1.8 94.4 0.0 O32 A:FUQ301 1.8 93.0 0.0 O33 A:FUQ301 1.9 94.8 0.0 O35 A:FUQ301 1.9 62.2 0.0 O55 A:FUQ301 2.0 71.2 0.0 MO2 A:FUQ301 3.4 47.9 0.7 O54 A:FUQ301 3.5 47.1 0.0 O21 A:FUQ301 3.6 48.1 0.0 MO5 A:FUQ301 3.7 47.0 0.7 C B:GLY127 3.7 57.6 1.0 O B:GLY127 3.7 62.4 1.0 N B:GLY128 3.8 58.4 1.0 CA B:GLY128 3.9 57.8 1.0 O A:HOH402 3.9 36.5 1.0 O24 A:FUQ301 4.1 53.9 0.0 O45 A:FUQ301 4.1 52.6 0.0 O25 A:FUQ301 4.2 49.3 0.0 O52 A:FUQ301 4.4 36.5 0.0 O23 A:FUQ301 4.4 48.1 0.0 CA B:GLY127 4.5 43.9 1.0 O53 A:FUQ301 4.6 47.1 0.0 CE1 A:HIS158 4.6 33.0 1.0 O15 A:FUQ301 4.9 56.5 0.0

Molybdenum binding site 10 out of 20 in the The Molybdenum Storage Protein - L131H


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of The Molybdenum Storage Protein - L131H within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo301 b:60.7 occ:0.85 MO4 A:FUQ301 0.0 60.7 0.8 O15 A:FUQ301 1.7 56.5 0.0 O45 A:FUQ301 1.8 52.6 0.0 O42 A:FUQ301 1.8 61.2 0.0 O44 A:FUQ301 1.9 61.2 0.0 O41 A:FUQ301 1.9 61.2 0.0 O43 A:FUQ301 1.9 61.2 0.0 MO1 A:FUQ301 3.3 50.1 0.8 O51 A:FUQ301 3.3 47.1 0.0 MO5 A:FUQ301 3.3 47.0 0.7 O54 A:FUQ301 3.5 47.1 0.0 O14 A:FUQ301 3.5 57.5 0.0 O12 A:FUQ301 3.6 50.4 0.0 O13 A:FUQ301 3.9 42.2 0.0 O53 A:FUQ301 4.0 47.1 0.0 O25 A:FUQ301 4.0 49.3 0.0 O55 A:FUQ301 4.2 71.2 0.0 NE2 B:HIS131 4.3 58.4 1.0 CA B:GLY130 4.5 45.7 1.0 CD2 B:HIS131 4.6 57.0 1.0 O35 A:FUQ301 4.6 62.2 0.0 CE1 B:HIS131 4.6 56.3 1.0 C B:GLY130 4.8 48.5 1.0 CE1 A:HIS157 4.9 68.7 1.0 O11 A:FUQ301 4.9 50.4 0.0 O B:GLY130 5.0 48.7 1.0

S.Brunle, J.Poppe, R.Hail, U.Demmer, U.Ermler. The Molybdenum Storage Protein - A Bionanolab For Creating Experimentally Alterable Polyoxomolybdate Clusters. J. Inorg. Biochem. V. 189 172 2018.
ISSN: ISSN 1873-3344
PubMed: 30278367
DOI: 10.1016/J.JINORGBIO.2018.09.011