Molybdenum in PDB 6rkd: Molybdenum Storage Protein Under Turnover Conditions

The structure of Molybdenum Storage Protein Under Turnover Conditions also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 192;

Binding sites:

The binding sites of Molybdenum atom in the Molybdenum Storage Protein Under Turnover Conditions (pdb code 6rkd). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 192 binding sites of Molybdenum where determined in the Molybdenum Storage Protein Under Turnover Conditions, PDB code: 6rkd:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo303 b:13.2 occ:0.95 MO1 A:8M0303 0.0 13.2 0.9 O1 A:8M0303 1.7 11.4 0.9 O2 A:8M0303 1.8 14.3 0.9 O24 A:8M0303 1.9 12.8 0.9 O3 A:8M0303 1.9 12.8 0.9 O5 A:8M0303 2.2 11.4 0.9 O4 A:8M0303 2.3 11.4 0.9 MO3 A:8M0303 3.2 13.7 0.9 MO2 A:8M0303 3.2 12.6 0.9 MO4 A:8M0303 3.5 12.6 0.9 O26 A:8M0303 3.6 11.8 0.9 O10 A:8M0303 3.7 12.8 0.9 O6 A:8M0303 3.8 10.0 0.9 O7 A:8M0303 3.8 14.3 0.9 MO8 A:8M0303 4.1 14.7 0.9 CA A:GLY110 4.2 9.9 1.0 NE2 A:GLN111 4.4 18.6 1.0 O22 A:8M0303 4.4 13.0 0.9 O25 A:8M0303 4.4 11.1 0.9 O20 A:8M0303 4.5 14.1 0.9 CA A:SER107 4.6 11.4 0.4 CA A:SER107 4.6 12.8 0.6 O9 A:8M0303 4.6 14.1 0.9 OH A:TYR127 4.6 18.5 1.0 O8 A:8M0303 4.7 11.4 0.9 O11 A:8M0303 4.7 12.1 0.9 O A:SER107 4.7 11.0 1.0 O A:ALA106 4.7 11.1 1.0 CE1 A:HIS114 4.8 13.8 1.0 C A:GLY110 4.8 10.4 1.0 O12 A:8M0303 5.0 13.1 0.9

Molybdenum binding site 2 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo303 b:12.6 occ:0.95 MO2 A:8M0303 0.0 12.6 0.9 O8 A:8M0303 1.7 11.4 0.9 O6 A:8M0303 1.8 10.0 0.9 O24 A:8M0303 1.9 12.8 0.9 O25 A:8M0303 2.0 11.1 0.9 O7 A:8M0303 2.1 14.3 0.9 O5 A:8M0303 2.2 11.4 0.9 O A:ALA106 3.1 11.1 1.0 MO1 A:8M0303 3.2 13.2 0.9 MO8 A:8M0303 3.3 14.7 0.9 MO4 A:8M0303 3.4 12.6 0.9 C A:ALA106 3.5 11.2 1.0 O2 A:8M0303 3.7 14.3 0.9 O22 A:8M0303 3.7 13.0 0.9 MO5 A:8M0303 3.7 15.9 0.9 O4 A:8M0303 3.8 11.4 0.9 CB A:ALA106 3.8 8.5 1.0 O11 A:8M0303 3.9 12.1 0.9 O13 A:8M0303 4.0 14.1 0.9 N A:SER107 4.0 10.8 1.0 O15 A:8M0303 4.1 15.3 0.9 CA A:ALA106 4.2 10.2 1.0 CA A:SER107 4.3 11.4 0.4 CA A:SER107 4.3 12.8 0.6 O16 A:8M0303 4.3 13.6 0.9 OG A:SER150 4.4 12.0 1.0 O14 A:8M0303 4.5 14.5 0.9 O1 A:8M0303 4.5 11.4 0.9 CE1 A:HIS130 4.6 20.2 1.0 O3 A:8M0303 4.7 12.8 0.9 O26 A:8M0303 4.7 11.8 0.9 CB A:SER150 4.7 9.7 1.0 CA A:GLY110 4.8 9.9 1.0 N A:GLY110 4.9 11.8 1.0 O12 A:8M0303 4.9 13.1 0.9 O20 A:8M0303 4.9 14.1 0.9 ND1 A:HIS130 5.0 22.9 1.0

Molybdenum binding site 3 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo303 b:13.7 occ:0.95 MO3 A:8M0303 0.0 13.7 0.9 O9 A:8M0303 1.8 14.1 0.9 O10 A:8M0303 1.8 12.8 0.9 O3 A:8M0303 1.9 12.8 0.9 O26 A:8M0303 2.1 11.8 0.9 O4 A:8M0303 2.2 11.4 0.9 OE2 A:GLU129 2.7 37.5 1.0 MO1 A:8M0303 3.2 13.2 0.9 CD A:GLU129 3.3 37.9 1.0 OE1 A:GLU129 3.3 39.4 1.0 MO4 A:8M0303 3.3 12.6 0.9 O1 A:8M0303 3.6 11.4 0.9 O5 A:8M0303 3.7 11.4 0.9 MO6 A:8M0303 3.9 14.2 0.9 O4 A:MOO308 4.0 20.0 1.0 O12 A:8M0303 4.1 13.1 0.9 O20 A:8M0303 4.1 14.1 0.9 O18 A:8M0303 4.1 15.9 0.9 O2 A:MOO308 4.4 20.0 1.0 O11 A:8M0303 4.5 12.1 0.9 O19 A:8M0303 4.6 11.9 0.9 CE1 A:HIS114 4.6 13.8 1.0 O2 A:8M0303 4.6 14.3 0.9 CG A:GLU129 4.6 33.4 1.0 CE2 A:TYR127 4.7 18.1 1.0 O24 A:8M0303 4.7 12.8 0.9 MO A:MOO308 4.9 20.0 1.0 MO8 A:8M0303 4.9 14.7 0.9 O7 A:8M0303 5.0 14.3 0.9

Molybdenum binding site 4 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo303 b:12.6 occ:0.95 MO4 A:8M0303 0.0 12.6 0.9 O12 A:8M0303 1.8 13.1 0.9 O4 A:8M0303 1.9 11.4 0.9 O7 A:8M0303 1.9 14.3 0.9 O11 A:8M0303 2.0 12.1 0.9 O26 A:8M0303 2.1 11.8 0.9 O5 A:8M0303 2.3 11.4 0.9 MO6 A:8M0303 3.2 14.2 0.9 O25 A:8M0303 3.3 11.1 0.9 MO3 A:8M0303 3.3 13.7 0.9 MO8 A:8M0303 3.4 14.7 0.9 MO2 A:8M0303 3.4 12.6 0.9 O24 A:8M0303 3.4 12.8 0.9 MO1 A:8M0303 3.5 13.2 0.9 OE2 A:GLU129 3.7 37.5 1.0 O3 A:8M0303 3.7 12.8 0.9 O20 A:8M0303 3.8 14.1 0.9 O19 A:8M0303 3.8 11.9 0.9 ND1 A:HIS130 4.2 22.9 1.0 MO7 A:8M0303 4.2 14.7 0.9 O14 A:8M0303 4.3 14.5 0.9 O8 A:8M0303 4.3 11.4 0.9 O17 A:8M0303 4.4 13.4 0.9 O16 A:8M0303 4.4 13.6 0.9 OH A:TYR127 4.4 18.5 1.0 O21 A:8M0303 4.5 14.3 0.9 CG A:HIS130 4.5 21.4 1.0 CE1 A:HIS130 4.6 20.2 1.0 N A:HIS130 4.6 19.3 1.0 O1 A:8M0303 4.6 11.4 0.9 O10 A:8M0303 4.6 12.8 0.9 O9 A:8M0303 4.7 14.1 0.9 O18 A:8M0303 4.8 15.9 0.9 CD A:GLU129 4.8 37.9 1.0 CB A:HIS130 4.9 20.3 1.0 O6 A:8M0303 4.9 10.0 0.9 O2 A:8M0303 4.9 14.3 0.9 O22 A:8M0303 5.0 13.0 0.9 MO5 A:8M0303 5.0 15.9 0.9

Molybdenum binding site 5 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo303 b:15.9 occ:0.95 MO5 A:8M0303 0.0 15.9 0.9 O15 A:8M0303 1.8 15.3 0.9 O13 A:8M0303 1.8 14.1 0.9 O25 A:8M0303 2.0 11.1 0.9 O14 A:8M0303 2.0 14.5 0.9 NE2 A:HIS156 2.1 15.7 1.0 O16 A:8M0303 2.3 13.6 0.9 CD2 A:HIS156 3.1 17.8 1.0 CE1 A:HIS156 3.2 19.0 1.0 MO8 A:8M0303 3.3 14.7 0.9 MO7 A:8M0303 3.4 14.7 0.9 MO2 A:8M0303 3.7 12.6 0.9 O11 A:8M0303 3.8 12.1 0.9 O22 A:8M0303 3.9 13.0 0.9 O8 A:8M0303 4.0 11.4 0.9 O6 A:8M0303 4.1 10.0 0.9 CB A:ALA106 4.1 8.5 1.0 O23 A:8M0303 4.1 16.1 0.9 O7 A:8M0303 4.2 14.3 0.9 CA A:PRO154 4.2 13.7 1.0 CG A:HIS156 4.3 20.3 1.0 ND1 A:HIS156 4.3 17.3 1.0 O5 A:8M0303 4.4 11.4 0.9 ND1 A:HIS130 4.4 22.9 1.0 CB A:PRO154 4.5 14.7 1.0 CE1 A:HIS130 4.6 20.2 1.0 O21 A:8M0303 4.8 14.3 0.9 O17 A:8M0303 4.9 13.4 0.9 MO4 A:8M0303 5.0 12.6 0.9

Molybdenum binding site 6 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo303 b:14.2 occ:0.95 MO6 A:8M0303 0.0 14.2 0.9 O19 A:8M0303 1.8 11.9 0.9 O18 A:8M0303 1.8 15.9 0.9 O17 A:8M0303 1.9 13.4 0.9 O26 A:8M0303 2.0 11.8 0.9 O11 A:8M0303 2.3 12.1 0.9 O20 A:8M0303 2.3 14.1 0.9 MO4 A:8M0303 3.2 12.6 0.9 MO7 A:8M0303 3.3 14.7 0.9 MO8 A:8M0303 3.4 14.7 0.9 O21 A:8M0303 3.7 14.3 0.9 O12 A:8M0303 3.8 13.1 0.9 MO3 A:8M0303 3.9 13.7 0.9 O9 A:8M0303 3.9 14.1 0.9 O16 A:8M0303 3.9 13.6 0.9 O5 A:8M0303 3.9 11.4 0.9 O4 A:8M0303 4.3 11.4 0.9 O3 A:8M0303 4.4 12.8 0.9 OE2 A:GLU129 4.6 37.5 1.0 O23 A:8M0303 4.6 16.1 0.9 O25 A:8M0303 4.7 11.1 0.9 O14 A:8M0303 4.7 14.5 0.9 O7 A:8M0303 4.9 14.3 0.9

Molybdenum binding site 7 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo303 b:14.7 occ:0.95 MO7 A:8M0303 0.0 14.7 0.9 O23 A:8M0303 1.8 16.1 0.9 O21 A:8M0303 1.8 14.3 0.9 O14 A:8M0303 2.0 14.5 0.9 O17 A:8M0303 2.0 13.4 0.9 O16 A:8M0303 2.2 13.6 0.9 O11 A:8M0303 2.3 12.1 0.9 MO6 A:8M0303 3.3 14.2 0.9 MO5 A:8M0303 3.4 15.9 0.9 MO8 A:8M0303 3.4 14.7 0.9 O25 A:8M0303 3.6 11.1 0.9 CE1 A:HIS156 3.8 19.0 1.0 O19 A:8M0303 3.8 11.9 0.9 O20 A:8M0303 3.9 14.1 0.9 NE2 A:HIS156 4.0 15.7 1.0 MO4 A:8M0303 4.2 12.6 0.9 ND1 A:HIS130 4.3 22.9 1.0 O26 A:8M0303 4.5 11.8 0.9 O1 B:8M0806 4.6 12.2 0.6 O5 A:8M0303 4.7 11.4 0.9 O12 A:8M0303 4.7 13.1 0.9 O15 A:8M0303 4.7 15.3 0.9 O7 A:8M0303 4.7 14.3 0.9 O13 A:8M0303 4.7 14.1 0.9 O18 A:8M0303 4.7 15.9 0.9 CB A:HIS130 4.7 20.3 1.0 CB A:PRO154 4.7 14.7 1.0 O22 A:8M0303 5.0 13.0 0.9 CG A:HIS130 5.0 21.4 1.0

Molybdenum binding site 8 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo303 b:14.7 occ:0.95 MO8 A:8M0303 0.0 14.7 0.9 O22 A:8M0303 1.8 13.0 0.9 O16 A:8M0303 1.9 13.6 0.9 O20 A:8M0303 2.0 14.1 0.9 O5 A:8M0303 2.0 11.4 0.9 O25 A:8M0303 2.1 11.1 0.9 O11 A:8M0303 2.3 12.1 0.9 MO2 A:8M0303 3.3 12.6 0.9 O26 A:8M0303 3.3 11.8 0.9 MO5 A:8M0303 3.3 15.9 0.9 O17 A:8M0303 3.4 13.4 0.9 MO4 A:8M0303 3.4 12.6 0.9 MO7 A:8M0303 3.4 14.7 0.9 MO6 A:8M0303 3.4 14.2 0.9 O15 A:8M0303 3.5 15.3 0.9 O6 A:8M0303 3.6 10.0 0.9 O14 A:8M0303 3.7 14.5 0.9 O7 A:8M0303 3.8 14.3 0.9 MO1 A:8M0303 4.1 13.2 0.9 O3 A:8M0303 4.1 12.8 0.9 O2 A:8M0303 4.2 14.3 0.9 O24 A:8M0303 4.3 12.8 0.9 O4 A:8M0303 4.3 11.4 0.9 O18 A:8M0303 4.4 15.9 0.9 O23 A:8M0303 4.6 16.1 0.9 O8 A:8M0303 4.8 11.4 0.9 O13 A:8M0303 4.8 14.1 0.9 O21 A:8M0303 4.9 14.3 0.9 MO3 A:8M0303 4.9 13.7 0.9 NE2 A:HIS156 4.9 15.7 1.0 O12 A:8M0303 5.0 13.1 0.9

Molybdenum binding site 9 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo304 b:20.0 occ:1.00 MO3 A:J8E304 0.0 20.0 1.0 O31 A:J8E304 1.8 20.0 1.0 O32 A:J8E304 1.9 20.0 1.0 O33 A:J8E304 1.9 20.0 1.0 O34 A:J8E304 2.0 20.0 1.0 O41 A:J8E304 2.3 20.0 1.0 O11 E:J8E305 2.8 20.0 1.0 MO4 A:J8E304 3.3 20.0 1.0 O45 A:J8E304 3.7 20.0 1.0 MO4 E:J8E305 3.8 20.0 1.0 MO8 A:J8E304 3.9 20.0 1.0 MO7 A:J8E304 4.0 20.0 1.0 MO8 E:J8E305 4.1 20.0 1.0 O44 E:J8E305 4.1 20.0 1.0 MO8 C:J8E304 4.1 20.0 1.0 O11 A:J8E304 4.1 20.0 1.0 MO7 C:J8E304 4.2 20.0 1.0 CG A:GLU129 4.2 33.4 1.0 MO7 E:J8E305 4.3 20.0 1.0 O41 E:J8E305 4.4 20.0 1.0 OE1 A:GLU129 4.7 39.4 1.0 NE2 E:GLN136 4.7 22.4 1.0 O44 A:J8E304 4.8 20.0 1.0 CB E:PRO131 4.8 27.0 1.0 CD A:GLU129 5.0 37.9 1.0

Molybdenum binding site 10 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo304 b:20.0 occ:1.00 MO4 A:J8E304 0.0 20.0 1.0 O45 A:J8E304 1.8 20.0 1.0 O44 A:J8E304 1.8 20.0 1.0 O34 A:J8E304 2.0 20.0 1.0 O11 A:J8E304 2.1 20.0 1.0 O41 A:J8E304 2.1 20.0 1.0 O33 C:J8E304 2.4 20.0 1.0 MO3 A:J8E304 3.3 20.0 1.0 MO7 C:J8E304 3.6 20.0 1.0 MO8 A:J8E304 3.7 20.0 1.0 MO7 A:J8E304 3.7 20.0 1.0 MO8 C:J8E304 3.7 20.0 1.0 O31 A:J8E304 3.8 20.0 1.0 MO3 C:J8E304 3.8 20.0 1.0 MO8 E:J8E305 3.9 20.0 1.0 MO7 E:J8E305 3.9 20.0 1.0 CG A:GLU129 4.0 33.4 1.0 OG1 A:THR132 4.0 27.4 1.0 CB A:GLU129 4.1 28.5 1.0 O41 C:J8E304 4.1 20.0 1.0 O11 E:J8E305 4.1 20.0 1.0 CB A:PRO131 4.5 27.0 1.0 O32 A:J8E304 4.7 20.0 1.0 O32 C:J8E304 4.7 20.0 1.0 O91 C:J8E304 4.8 20.0 1.0 O33 A:J8E304 4.8 20.0 1.0 O91 A:J8E304 4.8 20.0 1.0 N A:THR132 4.9 20.3 1.0 O81 A:J8E304 4.9 20.0 1.0 CG A:PRO131 5.0 26.9 1.0 O81 E:J8E305 5.0 20.0 1.0

S.Brunle, M.L.Eisinger, J.Poppe, D.J.Mills, J.D.Langer, J.Vonck, U.Ermler. Molybdate Pumping Into the Molybdenum Storage Protein Via An Atp-Powered Piercing Mechanism. Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
PubMed: 31811022
DOI: 10.1073/PNAS.1913031116