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Molybdenum in PDB 6rkd: Molybdenum Storage Protein Under Turnover Conditions

Other elements in 6rkd:

The structure of Molybdenum Storage Protein Under Turnover Conditions also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Molybdenum Binding Sites:

Molybdenum binding site 1 out of 192 in 6rkd

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Molybdenum binding site 1 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:13.2
occ:0.95
MO1 A:8M0303 0.0 13.2 0.9
O1 A:8M0303 1.7 11.4 0.9
O2 A:8M0303 1.8 14.3 0.9
O24 A:8M0303 1.9 12.8 0.9
O3 A:8M0303 1.9 12.8 0.9
O5 A:8M0303 2.2 11.4 0.9
O4 A:8M0303 2.3 11.4 0.9
MO3 A:8M0303 3.2 13.7 0.9
MO2 A:8M0303 3.2 12.6 0.9
MO4 A:8M0303 3.5 12.6 0.9
O26 A:8M0303 3.6 11.8 0.9
O10 A:8M0303 3.7 12.8 0.9
O6 A:8M0303 3.8 10.0 0.9
O7 A:8M0303 3.8 14.3 0.9
MO8 A:8M0303 4.1 14.7 0.9
CA A:GLY110 4.2 9.9 1.0
NE2 A:GLN111 4.4 18.6 1.0
O22 A:8M0303 4.4 13.0 0.9
O25 A:8M0303 4.4 11.1 0.9
O20 A:8M0303 4.5 14.1 0.9
CA A:SER107 4.6 11.4 0.4
CA A:SER107 4.6 12.8 0.6
O9 A:8M0303 4.6 14.1 0.9
OH A:TYR127 4.6 18.5 1.0
O8 A:8M0303 4.7 11.4 0.9
O11 A:8M0303 4.7 12.1 0.9
O A:SER107 4.7 11.0 1.0
O A:ALA106 4.7 11.1 1.0
CE1 A:HIS114 4.8 13.8 1.0
C A:GLY110 4.8 10.4 1.0
O12 A:8M0303 5.0 13.1 0.9

Molybdenum binding site 2 out of 192 in 6rkd

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Molybdenum binding site 2 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:12.6
occ:0.95
MO2 A:8M0303 0.0 12.6 0.9
O8 A:8M0303 1.7 11.4 0.9
O6 A:8M0303 1.8 10.0 0.9
O24 A:8M0303 1.9 12.8 0.9
O25 A:8M0303 2.0 11.1 0.9
O7 A:8M0303 2.1 14.3 0.9
O5 A:8M0303 2.2 11.4 0.9
O A:ALA106 3.1 11.1 1.0
MO1 A:8M0303 3.2 13.2 0.9
MO8 A:8M0303 3.3 14.7 0.9
MO4 A:8M0303 3.4 12.6 0.9
C A:ALA106 3.5 11.2 1.0
O2 A:8M0303 3.7 14.3 0.9
O22 A:8M0303 3.7 13.0 0.9
MO5 A:8M0303 3.7 15.9 0.9
O4 A:8M0303 3.8 11.4 0.9
CB A:ALA106 3.8 8.5 1.0
O11 A:8M0303 3.9 12.1 0.9
O13 A:8M0303 4.0 14.1 0.9
N A:SER107 4.0 10.8 1.0
O15 A:8M0303 4.1 15.3 0.9
CA A:ALA106 4.2 10.2 1.0
CA A:SER107 4.3 11.4 0.4
CA A:SER107 4.3 12.8 0.6
O16 A:8M0303 4.3 13.6 0.9
OG A:SER150 4.4 12.0 1.0
O14 A:8M0303 4.5 14.5 0.9
O1 A:8M0303 4.5 11.4 0.9
CE1 A:HIS130 4.6 20.2 1.0
O3 A:8M0303 4.7 12.8 0.9
O26 A:8M0303 4.7 11.8 0.9
CB A:SER150 4.7 9.7 1.0
CA A:GLY110 4.8 9.9 1.0
N A:GLY110 4.9 11.8 1.0
O12 A:8M0303 4.9 13.1 0.9
O20 A:8M0303 4.9 14.1 0.9
ND1 A:HIS130 5.0 22.9 1.0

Molybdenum binding site 3 out of 192 in 6rkd

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Molybdenum binding site 3 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:13.7
occ:0.95
MO3 A:8M0303 0.0 13.7 0.9
O9 A:8M0303 1.8 14.1 0.9
O10 A:8M0303 1.8 12.8 0.9
O3 A:8M0303 1.9 12.8 0.9
O26 A:8M0303 2.1 11.8 0.9
O4 A:8M0303 2.2 11.4 0.9
OE2 A:GLU129 2.7 37.5 1.0
MO1 A:8M0303 3.2 13.2 0.9
CD A:GLU129 3.3 37.9 1.0
OE1 A:GLU129 3.3 39.4 1.0
MO4 A:8M0303 3.3 12.6 0.9
O1 A:8M0303 3.6 11.4 0.9
O5 A:8M0303 3.7 11.4 0.9
MO6 A:8M0303 3.9 14.2 0.9
O4 A:MOO308 4.0 20.0 1.0
O12 A:8M0303 4.1 13.1 0.9
O20 A:8M0303 4.1 14.1 0.9
O18 A:8M0303 4.1 15.9 0.9
O2 A:MOO308 4.4 20.0 1.0
O11 A:8M0303 4.5 12.1 0.9
O19 A:8M0303 4.6 11.9 0.9
CE1 A:HIS114 4.6 13.8 1.0
O2 A:8M0303 4.6 14.3 0.9
CG A:GLU129 4.6 33.4 1.0
CE2 A:TYR127 4.7 18.1 1.0
O24 A:8M0303 4.7 12.8 0.9
MO A:MOO308 4.9 20.0 1.0
MO8 A:8M0303 4.9 14.7 0.9
O7 A:8M0303 5.0 14.3 0.9

Molybdenum binding site 4 out of 192 in 6rkd

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Molybdenum binding site 4 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:12.6
occ:0.95
MO4 A:8M0303 0.0 12.6 0.9
O12 A:8M0303 1.8 13.1 0.9
O4 A:8M0303 1.9 11.4 0.9
O7 A:8M0303 1.9 14.3 0.9
O11 A:8M0303 2.0 12.1 0.9
O26 A:8M0303 2.1 11.8 0.9
O5 A:8M0303 2.3 11.4 0.9
MO6 A:8M0303 3.2 14.2 0.9
O25 A:8M0303 3.3 11.1 0.9
MO3 A:8M0303 3.3 13.7 0.9
MO8 A:8M0303 3.4 14.7 0.9
MO2 A:8M0303 3.4 12.6 0.9
O24 A:8M0303 3.4 12.8 0.9
MO1 A:8M0303 3.5 13.2 0.9
OE2 A:GLU129 3.7 37.5 1.0
O3 A:8M0303 3.7 12.8 0.9
O20 A:8M0303 3.8 14.1 0.9
O19 A:8M0303 3.8 11.9 0.9
ND1 A:HIS130 4.2 22.9 1.0
MO7 A:8M0303 4.2 14.7 0.9
O14 A:8M0303 4.3 14.5 0.9
O8 A:8M0303 4.3 11.4 0.9
O17 A:8M0303 4.4 13.4 0.9
O16 A:8M0303 4.4 13.6 0.9
OH A:TYR127 4.4 18.5 1.0
O21 A:8M0303 4.5 14.3 0.9
CG A:HIS130 4.5 21.4 1.0
CE1 A:HIS130 4.6 20.2 1.0
N A:HIS130 4.6 19.3 1.0
O1 A:8M0303 4.6 11.4 0.9
O10 A:8M0303 4.6 12.8 0.9
O9 A:8M0303 4.7 14.1 0.9
O18 A:8M0303 4.8 15.9 0.9
CD A:GLU129 4.8 37.9 1.0
CB A:HIS130 4.9 20.3 1.0
O6 A:8M0303 4.9 10.0 0.9
O2 A:8M0303 4.9 14.3 0.9
O22 A:8M0303 5.0 13.0 0.9
MO5 A:8M0303 5.0 15.9 0.9

Molybdenum binding site 5 out of 192 in 6rkd

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Molybdenum binding site 5 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:15.9
occ:0.95
MO5 A:8M0303 0.0 15.9 0.9
O15 A:8M0303 1.8 15.3 0.9
O13 A:8M0303 1.8 14.1 0.9
O25 A:8M0303 2.0 11.1 0.9
O14 A:8M0303 2.0 14.5 0.9
NE2 A:HIS156 2.1 15.7 1.0
O16 A:8M0303 2.3 13.6 0.9
CD2 A:HIS156 3.1 17.8 1.0
CE1 A:HIS156 3.2 19.0 1.0
MO8 A:8M0303 3.3 14.7 0.9
MO7 A:8M0303 3.4 14.7 0.9
MO2 A:8M0303 3.7 12.6 0.9
O11 A:8M0303 3.8 12.1 0.9
O22 A:8M0303 3.9 13.0 0.9
O8 A:8M0303 4.0 11.4 0.9
O6 A:8M0303 4.1 10.0 0.9
CB A:ALA106 4.1 8.5 1.0
O23 A:8M0303 4.1 16.1 0.9
O7 A:8M0303 4.2 14.3 0.9
CA A:PRO154 4.2 13.7 1.0
CG A:HIS156 4.3 20.3 1.0
ND1 A:HIS156 4.3 17.3 1.0
O5 A:8M0303 4.4 11.4 0.9
ND1 A:HIS130 4.4 22.9 1.0
CB A:PRO154 4.5 14.7 1.0
CE1 A:HIS130 4.6 20.2 1.0
O21 A:8M0303 4.8 14.3 0.9
O17 A:8M0303 4.9 13.4 0.9
MO4 A:8M0303 5.0 12.6 0.9

Molybdenum binding site 6 out of 192 in 6rkd

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Molybdenum binding site 6 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:14.2
occ:0.95
MO6 A:8M0303 0.0 14.2 0.9
O19 A:8M0303 1.8 11.9 0.9
O18 A:8M0303 1.8 15.9 0.9
O17 A:8M0303 1.9 13.4 0.9
O26 A:8M0303 2.0 11.8 0.9
O11 A:8M0303 2.3 12.1 0.9
O20 A:8M0303 2.3 14.1 0.9
MO4 A:8M0303 3.2 12.6 0.9
MO7 A:8M0303 3.3 14.7 0.9
MO8 A:8M0303 3.4 14.7 0.9
O21 A:8M0303 3.7 14.3 0.9
O12 A:8M0303 3.8 13.1 0.9
MO3 A:8M0303 3.9 13.7 0.9
O9 A:8M0303 3.9 14.1 0.9
O16 A:8M0303 3.9 13.6 0.9
O5 A:8M0303 3.9 11.4 0.9
O4 A:8M0303 4.3 11.4 0.9
O3 A:8M0303 4.4 12.8 0.9
OE2 A:GLU129 4.6 37.5 1.0
O23 A:8M0303 4.6 16.1 0.9
O25 A:8M0303 4.7 11.1 0.9
O14 A:8M0303 4.7 14.5 0.9
O7 A:8M0303 4.9 14.3 0.9

Molybdenum binding site 7 out of 192 in 6rkd

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Molybdenum binding site 7 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:14.7
occ:0.95
MO7 A:8M0303 0.0 14.7 0.9
O23 A:8M0303 1.8 16.1 0.9
O21 A:8M0303 1.8 14.3 0.9
O14 A:8M0303 2.0 14.5 0.9
O17 A:8M0303 2.0 13.4 0.9
O16 A:8M0303 2.2 13.6 0.9
O11 A:8M0303 2.3 12.1 0.9
MO6 A:8M0303 3.3 14.2 0.9
MO5 A:8M0303 3.4 15.9 0.9
MO8 A:8M0303 3.4 14.7 0.9
O25 A:8M0303 3.6 11.1 0.9
CE1 A:HIS156 3.8 19.0 1.0
O19 A:8M0303 3.8 11.9 0.9
O20 A:8M0303 3.9 14.1 0.9
NE2 A:HIS156 4.0 15.7 1.0
MO4 A:8M0303 4.2 12.6 0.9
ND1 A:HIS130 4.3 22.9 1.0
O26 A:8M0303 4.5 11.8 0.9
O1 B:8M0806 4.6 12.2 0.6
O5 A:8M0303 4.7 11.4 0.9
O12 A:8M0303 4.7 13.1 0.9
O15 A:8M0303 4.7 15.3 0.9
O7 A:8M0303 4.7 14.3 0.9
O13 A:8M0303 4.7 14.1 0.9
O18 A:8M0303 4.7 15.9 0.9
CB A:HIS130 4.7 20.3 1.0
CB A:PRO154 4.7 14.7 1.0
O22 A:8M0303 5.0 13.0 0.9
CG A:HIS130 5.0 21.4 1.0

Molybdenum binding site 8 out of 192 in 6rkd

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Molybdenum binding site 8 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo303

b:14.7
occ:0.95
MO8 A:8M0303 0.0 14.7 0.9
O22 A:8M0303 1.8 13.0 0.9
O16 A:8M0303 1.9 13.6 0.9
O20 A:8M0303 2.0 14.1 0.9
O5 A:8M0303 2.0 11.4 0.9
O25 A:8M0303 2.1 11.1 0.9
O11 A:8M0303 2.3 12.1 0.9
MO2 A:8M0303 3.3 12.6 0.9
O26 A:8M0303 3.3 11.8 0.9
MO5 A:8M0303 3.3 15.9 0.9
O17 A:8M0303 3.4 13.4 0.9
MO4 A:8M0303 3.4 12.6 0.9
MO7 A:8M0303 3.4 14.7 0.9
MO6 A:8M0303 3.4 14.2 0.9
O15 A:8M0303 3.5 15.3 0.9
O6 A:8M0303 3.6 10.0 0.9
O14 A:8M0303 3.7 14.5 0.9
O7 A:8M0303 3.8 14.3 0.9
MO1 A:8M0303 4.1 13.2 0.9
O3 A:8M0303 4.1 12.8 0.9
O2 A:8M0303 4.2 14.3 0.9
O24 A:8M0303 4.3 12.8 0.9
O4 A:8M0303 4.3 11.4 0.9
O18 A:8M0303 4.4 15.9 0.9
O23 A:8M0303 4.6 16.1 0.9
O8 A:8M0303 4.8 11.4 0.9
O13 A:8M0303 4.8 14.1 0.9
O21 A:8M0303 4.9 14.3 0.9
MO3 A:8M0303 4.9 13.7 0.9
NE2 A:HIS156 4.9 15.7 1.0
O12 A:8M0303 5.0 13.1 0.9

Molybdenum binding site 9 out of 192 in 6rkd

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Molybdenum binding site 9 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo304

b:20.0
occ:1.00
MO3 A:J8E304 0.0 20.0 1.0
O31 A:J8E304 1.8 20.0 1.0
O32 A:J8E304 1.9 20.0 1.0
O33 A:J8E304 1.9 20.0 1.0
O34 A:J8E304 2.0 20.0 1.0
O41 A:J8E304 2.3 20.0 1.0
O11 E:J8E305 2.8 20.0 1.0
MO4 A:J8E304 3.3 20.0 1.0
O45 A:J8E304 3.7 20.0 1.0
MO4 E:J8E305 3.8 20.0 1.0
MO8 A:J8E304 3.9 20.0 1.0
MO7 A:J8E304 4.0 20.0 1.0
MO8 E:J8E305 4.1 20.0 1.0
O44 E:J8E305 4.1 20.0 1.0
MO8 C:J8E304 4.1 20.0 1.0
O11 A:J8E304 4.1 20.0 1.0
MO7 C:J8E304 4.2 20.0 1.0
CG A:GLU129 4.2 33.4 1.0
MO7 E:J8E305 4.3 20.0 1.0
O41 E:J8E305 4.4 20.0 1.0
OE1 A:GLU129 4.7 39.4 1.0
NE2 E:GLN136 4.7 22.4 1.0
O44 A:J8E304 4.8 20.0 1.0
CB E:PRO131 4.8 27.0 1.0
CD A:GLU129 5.0 37.9 1.0

Molybdenum binding site 10 out of 192 in 6rkd

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Molybdenum binding site 10 out of 192 in the Molybdenum Storage Protein Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of Molybdenum Storage Protein Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo304

b:20.0
occ:1.00
MO4 A:J8E304 0.0 20.0 1.0
O45 A:J8E304 1.8 20.0 1.0
O44 A:J8E304 1.8 20.0 1.0
O34 A:J8E304 2.0 20.0 1.0
O11 A:J8E304 2.1 20.0 1.0
O41 A:J8E304 2.1 20.0 1.0
O33 C:J8E304 2.4 20.0 1.0
MO3 A:J8E304 3.3 20.0 1.0
MO7 C:J8E304 3.6 20.0 1.0
MO8 A:J8E304 3.7 20.0 1.0
MO7 A:J8E304 3.7 20.0 1.0
MO8 C:J8E304 3.7 20.0 1.0
O31 A:J8E304 3.8 20.0 1.0
MO3 C:J8E304 3.8 20.0 1.0
MO8 E:J8E305 3.9 20.0 1.0
MO7 E:J8E305 3.9 20.0 1.0
CG A:GLU129 4.0 33.4 1.0
OG1 A:THR132 4.0 27.4 1.0
CB A:GLU129 4.1 28.5 1.0
O41 C:J8E304 4.1 20.0 1.0
O11 E:J8E305 4.1 20.0 1.0
CB A:PRO131 4.5 27.0 1.0
O32 A:J8E304 4.7 20.0 1.0
O32 C:J8E304 4.7 20.0 1.0
O91 C:J8E304 4.8 20.0 1.0
O33 A:J8E304 4.8 20.0 1.0
O91 A:J8E304 4.8 20.0 1.0
N A:THR132 4.9 20.3 1.0
O81 A:J8E304 4.9 20.0 1.0
CG A:PRO131 5.0 26.9 1.0
O81 E:J8E305 5.0 20.0 1.0

Reference:

S.Brunle, M.L.Eisinger, J.Poppe, D.J.Mills, J.D.Langer, J.Vonck, U.Ermler. Molybdate Pumping Into the Molybdenum Storage Protein Via An Atp-Powered Piercing Mechanism. Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
PubMed: 31811022
DOI: 10.1073/PNAS.1913031116
Page generated: Tue Dec 15 05:21:08 2020

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