Molybdenum in PDB 6tga: Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus

All present enzymatic activity of Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus:
1.2.1.2;

The structure of Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus also contains other interesting chemical elements:

Iron

(Fe)

48 atoms

The binding sites of Molybdenum atom in the Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus (pdb code 6tga). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus, PDB code: 6tga:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo1003 b:5.4 occ:1.00 S A:H2S1009 2.2 5.1 1.0 S13 A:MGD1002 2.4 9.8 1.0 S13 A:MGD1001 2.5 9.8 1.0 S12 A:MGD1001 2.5 9.8 1.0 S12 A:MGD1002 2.6 9.8 1.0 SG A:CYS386 2.8 6.1 1.0 CB A:CYS386 3.4 6.1 1.0 C13 A:MGD1002 3.4 9.8 1.0 C12 A:MGD1001 3.4 9.8 1.0 C13 A:MGD1001 3.4 9.8 1.0 C12 A:MGD1002 3.4 9.8 1.0 CA A:GLY588 4.2 7.0 1.0 N A:GLN589 4.2 5.1 1.0 OE1 A:GLN589 4.5 5.1 1.0 C11 A:MGD1002 4.7 9.8 1.0 N A:GLY588 4.8 7.0 1.0 C A:GLY588 4.8 7.0 1.0 C11 A:MGD1001 4.8 9.8 1.0 ND2 A:ASN835 4.8 4.3 1.0 CA A:CYS386 4.9 6.1 1.0 CG A:GLN589 4.9 5.1 1.0 C14 A:MGD1002 4.9 9.8 1.0 C14 A:MGD1001 4.9 9.8 1.0 NH2 A:ARG829 4.9 5.6 1.0 CD A:GLN589 5.0 5.1 1.0

Molybdenum binding site 2 out of 2 in the Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryo-Em Structure of As Isolated Form of Nad+-Dependent Formate Dehydrogenase From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ E:Mo1003 b:5.5 occ:1.00 S E:H2S1009 2.2 5.1 1.0 S13 E:MGD1002 2.4 9.8 1.0 S13 E:MGD1001 2.5 9.8 1.0 S12 E:MGD1001 2.5 9.8 1.0 S12 E:MGD1002 2.6 9.8 1.0 SG E:CYS386 2.8 6.0 1.0 CB E:CYS386 3.4 6.0 1.0 C13 E:MGD1002 3.4 9.8 1.0 C12 E:MGD1001 3.4 9.8 1.0 C13 E:MGD1001 3.4 9.8 1.0 C12 E:MGD1002 3.4 9.8 1.0 CA E:GLY588 4.2 7.4 1.0 N E:GLN589 4.2 5.3 1.0 OE1 E:GLN589 4.5 5.3 1.0 C11 E:MGD1002 4.7 9.8 1.0 N E:GLY588 4.8 7.4 1.0 C E:GLY588 4.8 7.4 1.0 C11 E:MGD1001 4.8 9.8 1.0 ND2 E:ASN835 4.8 4.3 1.0 CA E:CYS386 4.9 6.0 1.0 CG E:GLN589 4.9 5.3 1.0 C14 E:MGD1002 4.9 9.8 1.0 C14 E:MGD1001 4.9 9.8 1.0 NH2 E:ARG829 4.9 5.8 1.0 CD E:GLN589 5.0 5.3 1.0

P.Wendler, C.Radon, G.Mittelstaedt, B.R.Duffus, J.Buerger, T.Mielke, S.Leimkuehler. Cryo-Em Structures Reveal Intricate Fe-S Cluster Arrangement and Charging in Rhodobacter Capsulatus Formate Dehydrogenase Nat Commun 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-15614-0