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Molybdenum in PDB 7bkc: Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure)

Enzymatic activity of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure)

All present enzymatic activity of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure):
1.17.1.9; 1.2.7.12; 1.2.99.5;

Other elements in 7bkc:

The structure of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure) also contains other interesting chemical elements:

Iron (Fe) 212 atoms
Zinc (Zn) 4 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure) (pdb code 7bkc). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure), PDB code: 7bkc:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 7bkc

Go back to Molybdenum Binding Sites List in 7bkc
Molybdenum binding site 1 out of 2 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mo501

b:78.4
occ:1.00
 S12 H:MGD503 2.6 43.9 1.0
S13 H:MGD502 2.7 42.8 1.0
S12 H:MGD502 2.7 42.8 1.0
SG H:CYS122 2.7 39.2 1.0
S13 H:MGD503 2.7 43.9 1.0
CB H:CYS122 3.1 39.2 1.0
C13 H:MGD502 3.7 42.8 1.0
C12 H:MGD502 3.7 42.8 1.0
C12 H:MGD503 3.7 43.9 1.0
C13 H:MGD503 3.8 43.9 1.0
CA H:CYS122 4.4 39.2 1.0
CE H:MET260 4.4 37.5 1.0
NH2 J:ARG13 4.5 39.1 1.0
CA H:GLY295 4.5 35.3 1.0
C10 H:MGD503 4.6 43.9 1.0
C11 H:MGD503 4.8 43.9 1.0
N H:GLY295 4.8 35.3 1.0
C11 H:MGD502 4.9 42.8 1.0

Molybdenum binding site 2 out of 2 in 7bkc

Go back to Molybdenum Binding Sites List in 7bkc
Molybdenum binding site 2 out of 2 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Dimeric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
h:Mo501

b:78.4
occ:1.00
 S12 h:MGD503 2.6 43.9 1.0
S13 h:MGD502 2.7 42.8 1.0
S12 h:MGD502 2.7 42.8 1.0
SG h:CYS122 2.7 39.2 1.0
S13 h:MGD503 2.7 43.9 1.0
CB h:CYS122 3.1 39.2 1.0
C13 h:MGD502 3.7 42.8 1.0
C12 h:MGD502 3.7 42.8 1.0
C12 h:MGD503 3.7 43.9 1.0
C13 h:MGD503 3.8 43.9 1.0
CA h:CYS122 4.4 39.2 1.0
CE h:MET260 4.4 37.5 1.0
NH2 j:ARG13 4.5 39.1 1.0
CA h:GLY295 4.5 35.3 1.0
C10 h:MGD503 4.6 43.9 1.0
C11 h:MGD503 4.8 43.9 1.0
N h:GLY295 4.8 35.3 1.0
C11 h:MGD502 4.9 42.8 1.0

Reference:

T.Watanabe, O.Pfeil-Gardiner, J.Kahnt, J.Koch, S.Shima, B.J.Murphy. Three-Megadalton Complex of Methanogenic Electron-Bifurcating and Co 2 -Fixing Enzymes. Science V. 373 1151 2021.
ISSN: ESSN 1095-9203
PubMed: 34516836
DOI: 10.1126/SCIENCE.ABG5550
Page generated: Sun Oct 6 16:55:59 2024

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