Molybdenum in PDB 7dqx: Crystal Structure of Xanthine Dehydrogenase Family Protein

All present enzymatic activity of Crystal Structure of Xanthine Dehydrogenase Family Protein:
1.5.99.14;

The structure of Crystal Structure of Xanthine Dehydrogenase Family Protein, PDB code: 7dqx was solved by W.Lei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	147.24 / 3.44
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	112.86, 126.792, 294.49, 90, 90, 90
R / Rfree (%)	28.8 / 32.6

The structure of Crystal Structure of Xanthine Dehydrogenase Family Protein also contains other interesting chemical elements:

Iron

(Fe)

8 atoms

The binding sites of Molybdenum atom in the Crystal Structure of Xanthine Dehydrogenase Family Protein (pdb code 7dqx). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Crystal Structure of Xanthine Dehydrogenase Family Protein, PDB code: 7dqx:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Crystal Structure of Xanthine Dehydrogenase Family Protein


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of Xanthine Dehydrogenase Family Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo802 b:96.4 occ:1.00 S8' A:MCN801 2.3 87.8 1.0 S7' A:MCN801 2.4 86.8 1.0 C8' A:MCN801 3.3 84.7 1.0 C7' A:MCN801 3.3 82.6 1.0 N A:GLY270 3.7 53.7 1.0 CA A:GLY270 3.9 51.9 1.0 C A:PHE269 3.9 52.9 1.0 OE2 A:GLU748 4.1 61.1 1.0 O2B A:MCN801 4.1 77.5 1.0 O A:PHE269 4.2 52.1 1.0 O A:ALA381 4.6 50.0 1.0 CA A:PHE269 4.6 52.2 1.0 CA A:ARG383 4.6 56.3 1.0 O3B A:MCN801 4.6 82.1 1.0 N A:SER552 4.7 61.5 1.0 CD A:GLU748 4.7 58.1 1.0 C9' A:MCN801 4.7 81.3 1.0 PB A:MCN801 4.8 80.9 1.0 C6' A:MCN801 4.8 80.0 1.0 N A:ARG383 4.8 55.3 1.0 C A:TRP551 4.9 61.9 1.0

Molybdenum binding site 2 out of 2 in the Crystal Structure of Xanthine Dehydrogenase Family Protein


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of Xanthine Dehydrogenase Family Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Mo802 b:105.8 occ:1.00 S8' D:MCN801 2.3 94.0 1.0 S7' D:MCN801 2.4 90.0 1.0 C8' D:MCN801 3.3 90.8 1.0 C7' D:MCN801 3.3 89.8 1.0 N D:GLY270 3.9 49.7 1.0 C D:PHE269 4.0 50.1 1.0 CA D:GLY270 4.0 51.2 1.0 O2B D:MCN801 4.2 86.4 1.0 O D:PHE269 4.2 49.5 1.0 CA D:ARG383 4.2 53.2 1.0 N D:SER552 4.3 67.4 1.0 OE2 D:GLU748 4.3 70.0 1.0 CA D:TRP551 4.6 70.3 1.0 CA D:PHE269 4.6 49.4 1.0 N D:ARG383 4.6 54.5 1.0 O3B D:MCN801 4.7 88.7 1.0 C9' D:MCN801 4.7 86.7 1.0 C6' D:MCN801 4.8 85.6 1.0 CB D:TRP551 4.8 74.5 1.0 CD D:GLU748 4.8 77.5 1.0 CB D:ARG383 4.9 52.3 1.0 PB D:MCN801 4.9 89.1 1.0 N D:ALA384 5.0 54.4 1.0 C D:TRP551 5.0 68.1 1.0 CG D:GLU748 5.0 71.0 1.0

W.Lei, W.Lei. N/A N/A.