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Molybdenum in PDB 7z5j: The Molybdenum Storage Protein Loaded with Tungstate

Other elements in 7z5j:

The structure of The Molybdenum Storage Protein Loaded with Tungstate also contains other interesting chemical elements:

Tungsten (W) 220 atoms
Magnesium (Mg) 12 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Molybdenum Storage Protein Loaded with Tungstate (pdb code 7z5j). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 6 binding sites of Molybdenum where determined in the The Molybdenum Storage Protein Loaded with Tungstate, PDB code: 7z5j:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6;

Molybdenum binding site 1 out of 6 in 7z5j

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Molybdenum binding site 1 out of 6 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo301

b:113.6
occ:1.00
 MO B:MOO301 0.0 113.6 1.0
O1 B:MOO301 1.7 113.6 1.0
O3 B:MOO301 1.7 113.6 1.0
O4 B:MOO301 1.7 113.6 1.0
O2 B:MOO301 1.7 113.6 1.0
O1G B:ATP302 3.1 106.1 1.0
NE B:ARG168 3.6 101.4 1.0
O2G B:ATP302 3.6 106.1 1.0
PG B:ATP302 3.6 106.1 1.0
OG1 B:THR169 3.9 101.4 1.0
NH1 B:ARG83 4.0 101.4 1.0
O3G B:ATP302 4.1 106.1 1.0
CB B:ALA78 4.2 101.4 1.0
NH2 B:ARG83 4.2 101.4 1.0
CD B:ARG168 4.2 101.4 1.0
MG B:MG303 4.2 98.1 1.0
CB B:ARG168 4.2 101.4 1.0
CZ B:ARG168 4.5 101.4 1.0
NH1 B:ARG168 4.5 101.4 1.0
CZ B:ARG83 4.5 101.4 1.0
CG2 B:THR169 4.7 101.4 1.0
N B:ALA78 4.7 101.4 1.0
CG B:ARG168 4.8 101.4 1.0
N B:GLY79 4.9 101.4 1.0
OE1 B:GLU227 4.9 104.4 1.0
CB B:THR169 4.9 101.4 1.0

Molybdenum binding site 2 out of 6 in 7z5j

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Molybdenum binding site 2 out of 6 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mo301

b:112.6
occ:1.00
 MO D:MOO301 0.0 112.6 1.0
O1 D:MOO301 1.7 112.6 1.0
O3 D:MOO301 1.7 112.6 1.0
O4 D:MOO301 1.7 112.6 1.0
O2 D:MOO301 1.7 112.6 1.0
O1G D:ATP302 3.1 105.5 1.0
NE D:ARG168 3.3 101.4 1.0
O2G D:ATP302 3.6 105.5 1.0
PG D:ATP302 3.6 105.5 1.0
CD D:ARG168 3.9 101.4 1.0
OG1 D:THR169 4.0 101.4 1.0
NH1 D:ARG83 4.0 101.4 1.0
O3G D:ATP302 4.1 105.5 1.0
CB D:ARG168 4.2 101.4 1.0
NH2 D:ARG83 4.2 101.4 1.0
CB D:ALA78 4.2 101.4 1.0
MG D:MG303 4.2 97.5 1.0
CZ D:ARG168 4.4 101.4 1.0
NH1 D:ARG168 4.5 101.4 1.0
CZ D:ARG83 4.5 101.4 1.0
N D:ALA78 4.6 101.4 1.0
CG D:ARG168 4.6 101.4 1.0
CG2 D:THR169 4.7 101.4 1.0
N D:GLY79 4.8 101.4 1.0
N D:THR169 4.9 101.4 1.0
CB D:THR169 4.9 101.4 1.0
CA D:ALA78 5.0 101.4 1.0

Molybdenum binding site 3 out of 6 in 7z5j

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Molybdenum binding site 3 out of 6 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mo301

b:113.0
occ:1.00
 MO F:MOO301 0.0 113.0 1.0
O1 F:MOO301 1.7 113.0 1.0
O3 F:MOO301 1.7 113.0 1.0
O2 F:MOO301 1.7 113.0 1.0
O4 F:MOO301 1.7 113.0 1.0
O1G F:ATP302 3.0 107.2 1.0
NE F:ARG168 3.1 101.4 1.0
O2G F:ATP302 3.6 107.2 1.0
PG F:ATP302 3.6 107.2 1.0
CD F:ARG168 3.9 101.4 1.0
OG1 F:THR169 3.9 101.4 1.0
NH1 F:ARG83 4.0 101.4 1.0
O3G F:ATP302 4.1 107.2 1.0
CZ F:ARG168 4.1 101.4 1.0
NH1 F:ARG168 4.1 101.4 1.0
CB F:ALA78 4.2 101.4 1.0
NH2 F:ARG83 4.2 101.4 1.0
MG F:MG303 4.2 97.3 1.0
CB F:ARG168 4.3 101.4 1.0
CZ F:ARG83 4.5 101.4 1.0
CG2 F:THR169 4.6 101.4 1.0
CG F:ARG168 4.7 101.4 1.0
N F:ALA78 4.7 101.4 1.0
N F:GLY79 4.8 101.4 1.0
CB F:THR169 4.9 101.4 1.0
CE F:MET149 4.9 101.4 1.0
N F:THR169 5.0 101.4 1.0

Molybdenum binding site 4 out of 6 in 7z5j

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Molybdenum binding site 4 out of 6 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mo301

b:114.4
occ:1.00
 MO H:MOO301 0.0 114.4 1.0
O1 H:MOO301 1.7 114.4 1.0
O3 H:MOO301 1.7 114.4 1.0
O4 H:MOO301 1.7 114.4 1.0
O2 H:MOO301 1.7 114.4 1.0
O1G H:ATP302 3.0 104.6 1.0
NE H:ARG168 3.2 101.4 1.0
O2G H:ATP302 3.6 104.6 1.0
PG H:ATP302 3.6 104.6 1.0
OG1 H:THR169 3.9 101.4 1.0
CD H:ARG168 4.0 101.4 1.0
O3G H:ATP302 4.0 104.6 1.0
NH1 H:ARG83 4.0 101.4 1.0
NH1 H:ARG168 4.1 101.4 1.0
CZ H:ARG168 4.1 101.4 1.0
CB H:ALA78 4.2 101.4 1.0
MG H:MG303 4.2 97.0 1.0
NH2 H:ARG83 4.2 101.4 1.0
CB H:ARG168 4.3 101.4 1.0
CZ H:ARG83 4.6 101.4 1.0
CG2 H:THR169 4.6 101.4 1.0
N H:ALA78 4.6 101.4 1.0
CG H:ARG168 4.7 101.4 1.0
N H:GLY79 4.8 101.4 1.0
CB H:THR169 4.9 101.4 1.0
N H:THR169 5.0 101.4 1.0
CA H:ALA78 5.0 101.4 1.0

Molybdenum binding site 5 out of 6 in 7z5j

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Molybdenum binding site 5 out of 6 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mo301

b:112.9
occ:1.00
 MO J:MOO301 0.0 112.9 1.0
O1 J:MOO301 1.7 112.9 1.0
O3 J:MOO301 1.7 112.9 1.0
O4 J:MOO301 1.7 112.9 1.0
O2 J:MOO301 1.7 112.9 1.0
O1G J:ATP302 3.0 108.0 1.0
NE J:ARG168 3.3 101.4 1.0
PG J:ATP302 3.6 108.0 1.0
O2G J:ATP302 3.6 108.0 1.0
OG1 J:THR169 3.9 101.4 1.0
NH1 J:ARG83 4.0 101.4 1.0
O3G J:ATP302 4.0 108.0 1.0
CD J:ARG168 4.0 101.4 1.0
NH1 J:ARG168 4.2 101.4 1.0
CB J:ALA78 4.2 101.4 1.0
CZ J:ARG168 4.2 101.4 1.0
NH2 J:ARG83 4.2 101.4 1.0
MG J:MG303 4.2 97.1 1.0
CB J:ARG168 4.3 101.4 1.0
CZ J:ARG83 4.5 101.4 1.0
N J:ALA78 4.6 101.4 1.0
CG2 J:THR169 4.7 101.4 1.0
CG J:ARG168 4.8 101.4 1.0
N J:GLY79 4.8 101.4 1.0
CB J:THR169 4.9 101.4 1.0
CA J:ALA78 4.9 101.4 1.0
N J:THR169 5.0 101.4 1.0

Molybdenum binding site 6 out of 6 in 7z5j

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Molybdenum binding site 6 out of 6 in the The Molybdenum Storage Protein Loaded with Tungstate


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of The Molybdenum Storage Protein Loaded with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mo301

b:115.0
occ:1.00
 MO L:MOO301 0.0 115.0 1.0
O1 L:MOO301 1.7 115.0 1.0
O3 L:MOO301 1.7 115.0 1.0
O4 L:MOO301 1.7 115.0 1.0
O2 L:MOO301 1.7 115.0 1.0
O1G L:ATP302 3.0 105.6 1.0
NE L:ARG168 3.1 101.4 1.0
PG L:ATP302 3.6 105.6 1.0
O2G L:ATP302 3.6 105.6 1.0
CD L:ARG168 3.9 101.4 1.0
NH1 L:ARG83 4.0 101.4 1.0
O3G L:ATP302 4.1 105.6 1.0
CZ L:ARG168 4.1 101.4 1.0
NH1 L:ARG168 4.1 101.4 1.0
OG1 L:THR169 4.1 101.4 1.0
MG L:MG303 4.2 97.5 1.0
NH2 L:ARG83 4.2 101.4 1.0
CB L:ARG168 4.3 101.4 1.0
CB L:ALA78 4.3 101.4 1.0
CZ L:ARG83 4.5 101.4 1.0
CG2 L:THR169 4.6 101.4 1.0
N L:ALA78 4.7 101.4 1.0
CG L:ARG168 4.7 101.4 1.0
N L:GLY79 4.9 101.4 1.0
N L:THR169 5.0 101.4 1.0

Reference:

I.Aziz, S.Kaltwasser, K.Kayastha, R.Khera, J.Vonck, U.Ermler. The Molybdenum Storage Protein Forms and Deposits Distinct Polynuclear Tungsten Oxygen Aggregates. J.Inorg.Biochem. V. 234 11904 2022.
ISSN: ISSN 0162-0134
PubMed: 35779405
DOI: 10.1016/J.JINORGBIO.2022.111904
Page generated: Sun Oct 6 17:04:57 2024

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