Atomistry » Molybdenum » PDB 5nqd-6op3 » 6h6w
Atomistry »
  Molybdenum »
    PDB 5nqd-6op3 »
      6h6w »

Molybdenum in PDB 6h6w: Molybdenum Storage Protein- H156A

Protein crystallography data

The structure of Molybdenum Storage Protein- H156A, PDB code: 6h6w was solved by U.Ermler, S.Bruenle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.48 / 1.90
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 114.270, 114.270, 234.140, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 20.3

Other elements in 6h6w:

The structure of Molybdenum Storage Protein- H156A also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Molybdenum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 21;

Binding sites:

The binding sites of Molybdenum atom in the Molybdenum Storage Protein- H156A (pdb code 6h6w). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 21 binding sites of Molybdenum where determined in the Molybdenum Storage Protein- H156A, PDB code: 6h6w:
Jump to Molybdenum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Molybdenum binding site 1 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 1 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:38.2
occ:0.70
MO1 B:FUQ302 0.0 38.2 0.7
O11 B:FUQ302 1.7 39.6 0.0
O25 B:FUQ302 1.7 40.1 0.0
O15 B:FUQ302 1.8 40.4 0.0
O13 B:FUQ302 1.9 41.2 0.0
O14 B:FUQ302 1.9 45.8 0.0
O12 B:FUQ302 2.0 39.6 0.0
O24 B:FUQ302 3.2 46.6 0.0
MO2 B:FUQ302 3.3 42.3 0.7
MO4 B:FUQ302 3.4 42.5 0.7
O22 B:FUQ302 3.5 42.0 0.0
O35 B:FUQ302 3.7 58.2 0.1
O43 B:FUQ302 3.7 46.5 0.0
O45 B:FUQ302 3.9 55.2 0.0
O41 B:FUQ302 4.0 48.7 0.0
NE2 A:HIS157 4.2 38.0 1.0
O B:HOH408 4.3 32.5 1.0
CG A:PRO103 4.3 26.9 1.0
O23 B:FUQ302 4.3 42.1 0.0
CB A:PRO103 4.4 28.4 1.0
O44 B:FUQ302 4.4 46.8 0.0
O55 B:FUQ302 4.6 60.8 0.0
O A:HOH476 4.6 47.4 1.0
CD2 A:HIS157 5.0 37.2 1.0

Molybdenum binding site 2 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 2 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:42.3
occ:0.70
MO2 B:FUQ302 0.0 42.3 0.7
O22 B:FUQ302 1.7 42.0 0.0
O25 B:FUQ302 1.7 40.1 0.0
O35 B:FUQ302 1.8 58.2 0.1
O23 B:FUQ302 1.9 42.1 0.0
O24 B:FUQ302 1.9 46.6 0.0
O21 B:FUQ302 1.9 41.9 0.0
O11 B:FUQ302 3.2 39.6 0.0
MO1 B:FUQ302 3.3 38.2 0.7
MO3 B:FUQ302 3.4 63.3 0.7
O34 B:FUQ302 3.5 79.7 0.0
O32 B:FUQ302 3.6 81.8 0.0
O14 B:FUQ302 3.7 45.8 0.0
O55 B:FUQ302 3.8 60.8 0.0
CD2 A:HIS157 4.0 37.2 1.0
O15 B:FUQ302 4.2 40.4 0.0
NE2 A:HIS157 4.2 38.0 1.0
CB A:ALA156 4.3 32.1 1.0
O13 B:FUQ302 4.3 41.2 0.0
O33 B:FUQ302 4.4 82.8 0.0
CB A:PRO103 4.4 28.4 1.0
CG A:PRO103 4.6 26.9 1.0
O B:ALA129 4.7 92.1 1.0
C B:ALA129 4.7 92.3 1.0
CB B:ALA129 4.8 87.1 1.0
O45 B:FUQ302 4.8 55.2 0.0
N B:GLY130 4.9 89.8 1.0

Molybdenum binding site 3 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 3 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:63.3
occ:0.70
MO3 B:FUQ302 0.0 63.3 0.7
O34 B:FUQ302 1.5 79.7 0.0
O31 B:FUQ302 1.8 82.2 0.0
O32 B:FUQ302 1.8 81.8 0.0
O33 B:FUQ302 1.9 82.8 0.0
O35 B:FUQ302 1.9 58.2 0.1
O55 B:FUQ302 1.9 60.8 0.0
MO2 B:FUQ302 3.4 42.3 0.7
O52 B:FUQ302 3.5 60.2 0.0
MO5 B:FUQ302 3.6 56.6 0.7
O21 B:FUQ302 3.6 41.9 0.0
O54 B:FUQ302 3.9 60.4 0.0
O25 B:FUQ302 4.0 40.1 0.0
O45 B:FUQ302 4.1 55.2 0.0
N B:ALA129 4.2 87.3 1.0
N B:GLY130 4.2 89.8 1.0
O24 B:FUQ302 4.2 46.6 0.0
CA B:GLY128 4.2 90.3 1.0
O53 B:FUQ302 4.3 60.3 0.0
O23 B:FUQ302 4.3 42.1 0.0
N B:LEU131 4.4 79.6 1.0
C B:GLY128 4.5 87.2 1.0
CA B:GLY130 4.6 90.3 1.0
C B:ALA129 4.7 92.3 1.0
C B:GLY130 4.9 83.7 1.0
CA B:ALA129 4.9 88.8 1.0

Molybdenum binding site 4 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 4 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:42.5
occ:0.70
MO4 B:FUQ302 0.0 42.5 0.7
O45 B:FUQ302 1.8 55.2 0.0
O15 B:FUQ302 1.8 40.4 0.0
O42 B:FUQ302 1.8 52.1 0.0
O41 B:FUQ302 1.9 48.7 0.0
O44 B:FUQ302 1.9 46.8 0.0
O43 B:FUQ302 1.9 46.5 0.0
O14 B:FUQ302 3.4 45.8 0.0
MO5 B:FUQ302 3.4 56.6 0.7
MO1 B:FUQ302 3.4 38.2 0.7
O53 B:FUQ302 3.5 60.3 0.0
O51 B:FUQ302 3.7 59.5 0.0
O12 B:FUQ302 3.7 39.6 0.0
O55 B:FUQ302 3.8 60.8 0.0
O54 B:FUQ302 3.9 60.4 0.0
O25 B:FUQ302 4.1 40.1 0.0
O B:HOH419 4.4 47.9 1.0
O13 B:FUQ302 4.5 41.2 0.0
O35 B:FUQ302 4.6 58.2 0.1
O11 B:FUQ302 5.0 39.6 0.0

Molybdenum binding site 5 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 5 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 5 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo302

b:56.6
occ:0.70
MO5 B:FUQ302 0.0 56.6 0.7
O45 B:FUQ302 1.8 55.2 0.0
O52 B:FUQ302 1.8 60.2 0.0
O55 B:FUQ302 1.8 60.8 0.0
O54 B:FUQ302 1.9 60.4 0.0
O53 B:FUQ302 1.9 60.3 0.0
O51 B:FUQ302 1.9 59.5 0.0
O42 B:FUQ302 3.2 52.1 0.0
MO4 B:FUQ302 3.4 42.5 0.7
MO3 B:FUQ302 3.6 63.3 0.7
O43 B:FUQ302 3.6 46.5 0.0
O31 B:FUQ302 3.7 82.2 0.0
CB B:SER132 3.8 94.9 1.0
O33 B:FUQ302 3.8 82.8 0.0
O35 B:FUQ302 3.9 58.2 0.1
O34 B:FUQ302 4.0 79.7 0.0
OG B:SER132 4.1 89.8 1.0
O44 B:FUQ302 4.1 46.8 0.0
O15 B:FUQ302 4.2 40.4 0.0
CA B:SER132 4.3 92.3 1.0
N B:SER132 4.3 89.0 1.0
C B:LEU131 4.8 76.9 1.0
O25 B:FUQ302 4.9 40.1 0.0

Molybdenum binding site 6 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 6 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 6 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:62.3
occ:0.70
MO1 B:FUQ303 0.0 62.3 0.7
O15 B:FUQ303 1.8 76.7 0.0
O25 B:FUQ303 1.9 69.5 0.0
O14 B:FUQ303 1.9 78.8 0.0
O11 B:FUQ303 1.9 79.0 0.0
O12 B:FUQ303 2.0 78.9 0.0
O13 B:FUQ303 2.1 78.9 0.0
O24 B:FUQ303 2.8 69.9 0.0
MO4 B:FUQ303 3.5 71.0 0.7
MO2 B:FUQ303 3.6 57.7 0.7
O41 B:FUQ303 3.6 87.0 0.0
O44 B:FUQ303 3.6 86.9 0.0
O22 B:FUQ303 3.7 74.2 0.0
O35 B:FUQ303 4.0 65.4 0.0
O43 B:FUQ303 4.0 86.5 0.0
OG B:SER104 4.0 27.9 0.5
OD2 B:ASP108 4.1 37.5 1.0
O45 B:FUQ303 4.2 73.2 0.0
CB B:SER104 4.3 30.4 0.5
CB B:SER104 4.4 30.3 0.5
OE1 B:GLN101 4.6 49.7 1.0
O23 B:FUQ303 4.9 74.2 0.0
O21 B:FUQ303 4.9 73.3 0.0
O B:GLN101 4.9 25.1 1.0
CG B:GLN101 4.9 45.3 1.0
OG B:SER104 5.0 34.3 0.5

Molybdenum binding site 7 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 7 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 7 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:57.7
occ:0.70
MO2 B:FUQ303 0.0 57.7 0.7
O24 B:FUQ303 1.7 69.9 0.0
O23 B:FUQ303 1.7 74.2 0.0
O35 B:FUQ303 1.7 65.4 0.0
O22 B:FUQ303 1.8 74.2 0.0
O25 B:FUQ303 2.0 69.5 0.0
O21 B:FUQ303 2.0 73.3 0.0
O32 B:FUQ303 2.7 63.9 0.0
MO3 B:FUQ303 3.1 57.2 0.7
O33 B:FUQ303 3.5 63.9 0.0
O34 B:FUQ303 3.5 63.8 0.0
MO1 B:FUQ303 3.6 62.3 0.7
OG B:SER104 3.7 27.9 0.5
O14 B:FUQ303 3.8 78.8 0.0
O11 B:FUQ303 3.8 79.0 0.0
O55 B:FUQ303 3.9 64.4 0.0
O15 B:FUQ303 4.0 76.7 0.0
O B:HOH434 4.0 39.2 1.0
CA B:PRO151 4.1 26.3 1.0
OG B:SER104 4.2 34.3 0.5
CB B:SER104 4.4 30.4 0.5
CB B:SER104 4.4 30.3 0.5
O B:HOH453 4.5 46.1 1.0
CG B:LYS153 4.6 48.9 1.0
CE B:LYS153 4.6 60.6 1.0
CB B:PRO151 4.6 29.5 1.0
O B:HOH484 4.7 36.1 1.0
NZ B:LYS153 4.7 65.8 1.0
O B:PRO150 4.7 25.6 1.0
C B:PRO151 4.7 24.8 1.0
O13 B:FUQ303 4.7 78.9 0.0
O B:PRO151 4.8 27.1 1.0
O31 B:FUQ303 4.8 63.8 0.0
CD B:LYS153 5.0 51.8 1.0
O44 B:FUQ303 5.0 86.9 0.0

Molybdenum binding site 8 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 8 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 8 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:57.2
occ:0.70
MO3 B:FUQ303 0.0 57.2 0.7
O35 B:FUQ303 1.6 65.4 0.0
O34 B:FUQ303 1.7 63.8 0.0
O55 B:FUQ303 1.7 64.4 0.0
O32 B:FUQ303 1.8 63.9 0.0
O31 B:FUQ303 1.9 63.8 0.0
O33 B:FUQ303 1.9 63.9 0.0
MO2 B:FUQ303 3.1 57.7 0.7
MO5 B:FUQ303 3.4 60.8 0.7
O52 B:FUQ303 3.5 71.7 0.0
O23 B:FUQ303 3.5 74.2 0.0
O24 B:FUQ303 3.9 69.9 0.0
O21 B:FUQ303 3.9 73.3 0.0
O25 B:FUQ303 4.0 69.5 0.0
O54 B:FUQ303 4.1 71.9 0.0
O53 B:FUQ303 4.1 72.0 0.0
O45 B:FUQ303 4.2 73.2 0.0
N B:ALA129 4.2 87.3 1.0
CB B:PRO151 4.2 29.5 1.0
C B:GLY128 4.3 87.2 1.0
CA B:GLY128 4.4 90.3 1.0
O B:HOH453 4.5 46.1 1.0
O B:HOH484 4.6 36.1 1.0
N B:GLY128 4.6 80.8 1.0
O15 B:FUQ303 4.7 76.7 0.0
CA B:PRO151 4.8 26.3 1.0
O44 B:FUQ303 4.9 86.9 0.0
O B:GLY128 4.9 70.9 1.0
O22 B:FUQ303 4.9 74.2 0.0
CA B:ALA129 4.9 88.8 1.0

Molybdenum binding site 9 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 9 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 9 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:71.0
occ:0.70
MO4 B:FUQ303 0.0 71.0 0.7
O45 B:FUQ303 1.8 73.2 0.0
O15 B:FUQ303 1.8 76.7 0.0
O42 B:FUQ303 1.8 87.1 0.0
O41 B:FUQ303 1.9 87.0 0.0
O43 B:FUQ303 1.9 86.5 0.0
O44 B:FUQ303 1.9 86.9 0.0
MO1 B:FUQ303 3.5 62.3 0.7
O54 B:FUQ303 3.5 71.9 0.0
O13 B:FUQ303 3.6 78.9 0.0
MO5 B:FUQ303 3.6 60.8 0.7
O12 B:FUQ303 3.7 78.9 0.0
O25 B:FUQ303 4.0 69.5 0.0
O51 B:FUQ303 4.0 71.4 0.0
O55 B:FUQ303 4.2 64.4 0.0
O14 B:FUQ303 4.2 78.8 0.0
OD2 B:ASP108 4.5 37.5 1.0
O53 B:FUQ303 4.5 72.0 0.0
O35 B:FUQ303 4.7 65.4 0.0
O34 B:FUQ303 4.8 63.8 0.0
O24 B:FUQ303 4.9 69.9 0.0

Molybdenum binding site 10 out of 21 in 6h6w

Go back to Molybdenum Binding Sites List in 6h6w
Molybdenum binding site 10 out of 21 in the Molybdenum Storage Protein- H156A


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 10 of Molybdenum Storage Protein- H156A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mo303

b:60.8
occ:0.70
MO5 B:FUQ303 0.0 60.8 0.7
O55 B:FUQ303 1.8 64.4 0.0
O52 B:FUQ303 1.8 71.7 0.0
O45 B:FUQ303 1.9 73.2 0.0
O51 B:FUQ303 1.9 71.4 0.0
O53 B:FUQ303 1.9 72.0 0.0
O54 B:FUQ303 2.1 71.9 0.0
O34 B:FUQ303 3.3 63.8 0.0
MO3 B:FUQ303 3.4 57.2 0.7
MO4 B:FUQ303 3.6 71.0 0.7
O42 B:FUQ303 3.6 87.1 0.0
O44 B:FUQ303 3.7 86.9 0.0
O35 B:FUQ303 3.8 65.4 0.0
N B:GLY128 3.9 80.8 1.0
O15 B:FUQ303 4.1 76.7 0.0
O31 B:FUQ303 4.2 63.8 0.0
O43 B:FUQ303 4.2 86.5 0.0
O33 B:FUQ303 4.2 63.9 0.0
CA B:GLY128 4.4 90.3 1.0
C B:GLY127 4.7 72.0 1.0
CA B:GLY127 4.9 49.0 1.0

Reference:

S.Brunle, J.Poppe, R.Hail, U.Demmer, U.Ermler. The Molybdenum Storage Protein - A Bionanolab For Creating Experimentally Alterable Polyoxomolybdate Clusters. J. Inorg. Biochem. V. 189 172 2018.
ISSN: ISSN 1873-3344
PubMed: 30278367
DOI: 10.1016/J.JINORGBIO.2018.09.011
Page generated: Sun Oct 6 16:33:12 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy