Molybdenum in PDB 7t51: Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Molybdate-Bound Form

The structure of Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Molybdate-Bound Form, PDB code: 7t51 was solved by D.H.Y.Ngu, Z.Luo, B.Y.J.Lim, B.Kobe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.48 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.528, 40.898, 111.09, 90, 92.54, 90
R / Rfree (%)	25.9 / 28.9

The binding sites of Molybdenum atom in the Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Molybdate-Bound Form (pdb code 7t51). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Molybdate-Bound Form, PDB code: 7t51:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Molybdate-Bound Form


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Molybdate-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo302 b:21.1 occ:1.00 MO A:MOO302 0.0 21.1 1.0 O3 A:MOO302 1.7 21.1 1.0 O1 A:MOO302 1.7 21.1 1.0 O4 A:MOO302 1.7 21.1 1.0 O2 A:MOO302 1.7 21.1 1.0 HB1 A:ALA31 3.2 29.0 1.0 HB1 A:ALA139 3.3 21.9 1.0 HD2 A:PRO140 3.4 23.7 1.0 HB A:ILE168 3.4 24.4 1.0 H A:ILE168 3.4 23.1 1.0 H A:ALA32 3.5 27.7 1.0 HA A:ALA139 3.5 23.4 1.0 HG21 A:ILE168 3.6 23.3 1.0 H A:ASN33 3.6 26.4 1.0 HA A:ALA59 3.7 27.4 1.0 HD22 A:ASN33 3.7 25.0 1.0 HD1 A:TYR141 3.7 22.9 1.0 HG1 A:THR60 3.7 26.9 1.0 HB2 A:ALA79 3.8 23.5 1.0 H A:THR60 3.8 27.9 1.0 HB3 A:ALA32 3.9 25.5 1.0 HB3 A:ALA79 3.9 23.5 1.0 H A:TYR141 3.9 22.7 1.0 HG22 A:ILE168 3.9 23.3 1.0 CB A:ALA139 3.9 14.7 1.0 HB2 A:ALA139 4.0 21.9 1.0 CG2 A:ILE168 4.0 12.7 1.0 HB3 A:ASN33 4.1 24.8 1.0 N A:ALA32 4.1 19.4 1.0 CA A:ALA139 4.1 15.2 1.0 CB A:ALA79 4.1 13.2 1.0 CB A:ILE168 4.1 12.8 1.0 HB1 A:ALA79 4.1 23.5 1.0 CB A:ALA31 4.2 25.1 1.0 HB2 A:TYR141 4.2 23.0 1.0 CD A:PRO140 4.2 13.1 1.0 HB2 A:ASN167 4.2 27.0 1.0 N A:ILE168 4.2 13.2 1.0 N A:ASN33 4.4 17.0 1.0 N A:PRO140 4.4 13.2 1.0 HB2 A:PRO140 4.4 23.8 1.0 CD1 A:TYR141 4.5 19.2 1.0 ND2 A:ASN33 4.5 18.4 1.0 OG1 A:THR60 4.5 19.6 1.0 N A:THR60 4.6 20.2 1.0 HB2 A:ALA31 4.6 29.0 1.0 O A:GLY58 4.6 23.6 1.0 C A:ALA139 4.6 15.4 1.0 CA A:ALA59 4.6 22.4 1.0 HB3 A:ALA31 4.6 29.0 1.0 HA A:ASN167 4.7 24.2 1.0 HA A:ALA31 4.7 26.1 1.0 CB A:ALA32 4.7 23.0 1.0 N A:TYR141 4.7 19.5 1.0 C A:ALA31 4.8 22.9 1.0 HD3 A:PRO140 4.8 23.7 1.0 CA A:ALA31 4.8 23.7 1.0 HB3 A:ALA139 4.8 21.9 1.0 CA A:ILE168 4.9 12.9 1.0 CA A:ALA32 4.9 19.4 1.0 CB A:ASN33 4.9 19.1 1.0 CB A:ASN167 5.0 15.3 1.0 HG23 A:ILE168 5.0 23.3 1.0 HD21 A:ASN33 5.0 25.0 1.0 HB2 A:ALA32 5.0 25.5 1.0 HB1 A:ALA59 5.0 27.3 1.0 HB A:THR60 5.0 27.2 1.0

Molybdenum binding site 2 out of 2 in the Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Molybdate-Bound Form


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Molybdate-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mo302 b:21.1 occ:1.00 MO B:MOO302 0.0 21.1 1.0 O1 B:MOO302 1.7 21.1 1.0 O3 B:MOO302 1.7 21.1 1.0 O2 B:MOO302 1.7 21.1 1.0 O4 B:MOO302 1.7 21.1 1.0 HD2 B:PRO140 3.2 23.7 1.0 HB1 B:ALA31 3.2 24.7 1.0 H B:ALA32 3.4 27.8 1.0 H B:ILE168 3.5 21.4 1.0 HB1 B:ALA139 3.5 22.8 1.0 HB2 B:ALA79 3.5 21.9 1.0 HG21 B:ILE168 3.5 23.0 1.0 H B:ASN33 3.5 25.7 1.0 HB B:ILE168 3.5 23.7 1.0 HB3 B:ALA79 3.6 21.9 1.0 HA B:ALA139 3.6 21.6 1.0 HA B:ALA59 3.6 24.6 1.0 HD22 B:ASN33 3.7 30.4 1.0 HD1 B:TYR141 3.7 25.7 1.0 HB3 B:ALA32 3.7 25.6 1.0 HG1 B:THR60 3.8 25.9 1.0 HG22 B:ILE168 3.8 23.0 1.0 CB B:ALA79 3.8 18.6 1.0 HB1 B:ALA79 3.9 21.9 1.0 H B:TYR141 3.9 25.4 1.0 HB3 B:ASN33 4.0 25.9 1.0 H B:THR60 4.0 24.8 1.0 CG2 B:ILE168 4.0 15.3 1.0 N B:ALA32 4.0 26.3 1.0 HB2 B:ALA139 4.0 22.8 1.0 CB B:ALA139 4.1 15.2 1.0 CD B:PRO140 4.1 18.1 1.0 HB2 B:ASN167 4.1 25.3 1.0 CB B:ALA31 4.1 20.5 1.0 HB2 B:TYR141 4.2 21.7 1.0 CB B:ILE168 4.2 14.9 1.0 CA B:ALA139 4.2 15.7 1.0 N B:ILE168 4.3 15.8 1.0 N B:ASN33 4.3 21.0 1.0 CD1 B:TYR141 4.4 23.9 1.0 N B:PRO140 4.5 17.6 1.0 ND2 B:ASN33 4.5 21.6 1.0 HB2 B:ALA31 4.5 24.7 1.0 HD3 B:PRO140 4.6 23.7 1.0 CB B:ALA32 4.6 25.9 1.0 CA B:ALA59 4.6 18.4 1.0 O B:GLY58 4.6 26.5 1.0 OG1 B:THR60 4.6 16.7 1.0 HB3 B:ALA31 4.6 24.7 1.0 HA B:ALA31 4.7 27.0 1.0 C B:ALA139 4.7 16.4 1.0 HA B:ASN167 4.7 24.1 1.0 C B:ALA31 4.7 20.1 1.0 N B:THR60 4.7 16.6 1.0 CA B:ALA32 4.7 26.0 1.0 N B:TYR141 4.8 24.3 1.0 CA B:ALA31 4.8 20.6 1.0 HB2 B:ALA32 4.8 25.6 1.0 CB B:ASN33 4.9 21.4 1.0 CB B:ASN167 4.9 17.9 1.0 HB2 B:PRO140 4.9 23.9 1.0 HB3 B:ASN167 4.9 25.3 1.0 HB1 B:ALA59 4.9 25.3 1.0 HG23 B:ILE168 4.9 23.0 1.0 HG2 B:PRO140 4.9 24.7 1.0 CA B:ILE168 4.9 15.2 1.0 HB3 B:ALA139 5.0 22.8 1.0

E.A.Maunders, D.H.Y.Ngu, K.Ganio, S.I.Hossain, B.Y.J.Lim, M.G.Leeming, Z.Luo, A.Tan, E.Deplazes, B.Kobe, C.A.Mcdevitt. The Impact of Chromate on Pseudomonas Aeruginosa Molybdenum Homeostasis. Front Microbiol V. 13 03146 2022.
ISSN: ESSN 1664-302X
PubMed: 35685933
DOI: 10.3389/FMICB.2022.903146