Molybdenum in PDB 8dbx: Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon

All present enzymatic activity of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon:
1.18.6.1;

The structure of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon also contains other interesting chemical elements:

Iron

(Fe)

48 atoms

The binding sites of Molybdenum atom in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon (pdb code 8dbx). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon, PDB code: 8dbx:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range: probe atom residue distance (Å) B Occ A:Mo600 b:37.8 occ:1.00 MO1 A:ICS600 0.0 37.8 1.0 O7 A:HCA601 2.2 28.0 1.0 O6 A:HCA601 2.2 24.8 1.0 ND1 A:HIS442 2.3 19.9 1.0 S4B A:ICS600 2.4 18.0 1.0 S1B A:ICS600 2.4 20.2 1.0 S3B A:ICS600 2.4 17.1 1.0 FE6 A:ICS600 2.7 29.9 1.0 FE7 A:ICS600 2.7 30.4 1.0 FE5 A:ICS600 2.8 39.5 1.0 C7 A:HCA601 2.9 27.8 1.0 CE1 A:HIS442 3.1 17.9 1.0 C3 A:HCA601 3.1 25.6 1.0 CG A:HIS442 3.4 15.1 1.0 CX A:ICS600 3.6 23.6 1.0 CB A:HIS442 3.8 19.1 1.0 O A:HOH759 4.0 15.3 1.0 O5 A:HCA601 4.1 33.3 1.0 C4 A:HCA601 4.1 24.2 1.0 C2 A:HCA601 4.2 22.3 1.0 NE2 A:HIS442 4.3 25.9 1.0 O2 A:HCA601 4.4 37.8 1.0 CA A:HIS442 4.4 7.9 1.0 CD2 A:HIS442 4.4 14.9 1.0 C5 A:HCA601 4.6 23.5 1.0 C1 A:HCA601 4.7 29.3 1.0 S2B A:ICS600 4.8 22.4 1.0 S5A A:ICS600 4.8 20.5 1.0 S3A A:ICS600 4.9 29.0 1.0

Molybdenum binding site 2 out of 2 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range: probe atom residue distance (Å) B Occ C:Mo600 b:41.6 occ:1.00 MO1 C:ICS600 0.0 41.6 1.0 O7 C:HCA601 2.2 24.4 1.0 O6 C:HCA601 2.2 21.0 1.0 ND1 C:HIS442 2.3 18.5 1.0 S4B C:ICS600 2.4 18.2 1.0 S1B C:ICS600 2.4 18.2 1.0 S3B C:ICS600 2.4 12.8 1.0 FE6 C:ICS600 2.7 27.1 1.0 FE7 C:ICS600 2.7 31.2 1.0 FE5 C:ICS600 2.7 39.5 1.0 C7 C:HCA601 3.0 22.8 1.0 C3 C:HCA601 3.1 21.7 1.0 CE1 C:HIS442 3.2 15.3 1.0 CG C:HIS442 3.4 13.3 1.0 CX C:ICS600 3.6 20.5 1.0 CB C:HIS442 3.8 13.5 1.0 O C:HOH755 4.0 9.6 1.0 O5 C:HCA601 4.1 29.8 1.0 C2 C:HCA601 4.1 18.8 1.0 C4 C:HCA601 4.2 25.4 1.0 O1 C:HCA601 4.3 35.2 1.0 NE2 C:HIS442 4.3 23.1 1.0 CA C:HIS442 4.4 10.4 1.0 CD2 C:HIS442 4.5 14.7 1.0 C5 C:HCA601 4.5 20.2 1.0 C1 C:HCA601 4.7 27.2 1.0 S2B C:ICS600 4.8 19.7 1.0 S5A C:ICS600 4.8 17.8 1.0 S3A C:ICS600 4.9 29.1 1.0

R.A.Warmack, A.O.Maggiolo, A.Orta, B.B.Wenke, J.B.Howard, D.C.Rees. Structural Consequences of Turnover-Induced Homocitrate Loss in Nitrogenase. Nat Commun V. 14 1091 2023.
ISSN: ESSN 2041-1723
PubMed: 36841829
DOI: 10.1038/S41467-023-36636-4