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Molybdenum in PDB 8dbx: Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon

Enzymatic activity of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon

All present enzymatic activity of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon:
1.18.6.1;

Other elements in 8dbx:

The structure of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon also contains other interesting chemical elements:

Iron (Fe) 48 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon (pdb code 8dbx). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon, PDB code: 8dbx:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 8dbx

Go back to Molybdenum Binding Sites List in 8dbx
Molybdenum binding site 1 out of 2 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo600

b:37.8
occ:1.00
MO1 A:ICS600 0.0 37.8 1.0
O7 A:HCA601 2.2 28.0 1.0
O6 A:HCA601 2.2 24.8 1.0
ND1 A:HIS442 2.3 19.9 1.0
S4B A:ICS600 2.4 18.0 1.0
S1B A:ICS600 2.4 20.2 1.0
S3B A:ICS600 2.4 17.1 1.0
FE6 A:ICS600 2.7 29.9 1.0
FE7 A:ICS600 2.7 30.4 1.0
FE5 A:ICS600 2.8 39.5 1.0
C7 A:HCA601 2.9 27.8 1.0
CE1 A:HIS442 3.1 17.9 1.0
C3 A:HCA601 3.1 25.6 1.0
CG A:HIS442 3.4 15.1 1.0
CX A:ICS600 3.6 23.6 1.0
CB A:HIS442 3.8 19.1 1.0
O A:HOH759 4.0 15.3 1.0
O5 A:HCA601 4.1 33.3 1.0
C4 A:HCA601 4.1 24.2 1.0
C2 A:HCA601 4.2 22.3 1.0
NE2 A:HIS442 4.3 25.9 1.0
O2 A:HCA601 4.4 37.8 1.0
CA A:HIS442 4.4 7.9 1.0
CD2 A:HIS442 4.4 14.9 1.0
C5 A:HCA601 4.6 23.5 1.0
C1 A:HCA601 4.7 29.3 1.0
S2B A:ICS600 4.8 22.4 1.0
S5A A:ICS600 4.8 20.5 1.0
S3A A:ICS600 4.9 29.0 1.0

Molybdenum binding site 2 out of 2 in 8dbx

Go back to Molybdenum Binding Sites List in 8dbx
Molybdenum binding site 2 out of 2 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo600

b:41.6
occ:1.00
MO1 C:ICS600 0.0 41.6 1.0
O7 C:HCA601 2.2 24.4 1.0
O6 C:HCA601 2.2 21.0 1.0
ND1 C:HIS442 2.3 18.5 1.0
S4B C:ICS600 2.4 18.2 1.0
S1B C:ICS600 2.4 18.2 1.0
S3B C:ICS600 2.4 12.8 1.0
FE6 C:ICS600 2.7 27.1 1.0
FE7 C:ICS600 2.7 31.2 1.0
FE5 C:ICS600 2.7 39.5 1.0
C7 C:HCA601 3.0 22.8 1.0
C3 C:HCA601 3.1 21.7 1.0
CE1 C:HIS442 3.2 15.3 1.0
CG C:HIS442 3.4 13.3 1.0
CX C:ICS600 3.6 20.5 1.0
CB C:HIS442 3.8 13.5 1.0
O C:HOH755 4.0 9.6 1.0
O5 C:HCA601 4.1 29.8 1.0
C2 C:HCA601 4.1 18.8 1.0
C4 C:HCA601 4.2 25.4 1.0
O1 C:HCA601 4.3 35.2 1.0
NE2 C:HIS442 4.3 23.1 1.0
CA C:HIS442 4.4 10.4 1.0
CD2 C:HIS442 4.5 14.7 1.0
C5 C:HCA601 4.5 20.2 1.0
C1 C:HCA601 4.7 27.2 1.0
S2B C:ICS600 4.8 19.7 1.0
S5A C:ICS600 4.8 17.8 1.0
S3A C:ICS600 4.9 29.1 1.0

Reference:

R.A.Warmack, A.O.Maggiolo, A.Orta, B.B.Wenke, J.B.Howard, D.C.Rees. Structural Consequences of Turnover-Induced Homocitrate Loss in Nitrogenase. Nat Commun V. 14 1091 2023.
ISSN: ESSN 2041-1723
PubMed: 36841829
DOI: 10.1038/S41467-023-36636-4
Page generated: Sun Oct 6 17:40:00 2024

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