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Molybdenum in PDB 8dfd: Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii

Enzymatic activity of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii

All present enzymatic activity of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii:
1.18.6.1;

Other elements in 8dfd:

The structure of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Fluorine (F) 16 atoms
Iron (Fe) 40 atoms
Aluminium (Al) 4 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii (pdb code 8dfd). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii, PDB code: 8dfd:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 8dfd

Go back to Molybdenum Binding Sites List in 8dfd
Molybdenum binding site 1 out of 2 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo600

b:44.8
occ:1.00
MO1 A:ICS600 0.0 44.8 1.0
O6 A:HCA601 2.2 33.4 1.0
O7 A:HCA601 2.2 30.9 1.0
ND1 A:HIS442 2.3 25.1 1.0
S4B A:ICS600 2.4 21.8 1.0
S1B A:ICS600 2.4 28.4 1.0
S3B A:ICS600 2.4 27.2 1.0
FE6 A:ICS600 2.7 43.5 1.0
FE7 A:ICS600 2.7 49.1 1.0
FE5 A:ICS600 2.7 46.2 1.0
C7 A:HCA601 3.0 28.9 1.0
C3 A:HCA601 3.1 32.1 1.0
CE1 A:HIS442 3.2 24.6 1.0
CG A:HIS442 3.4 23.2 1.0
CX A:ICS600 3.6 30.1 1.0
CB A:HIS442 3.7 28.6 1.0
O A:HOH760 4.0 18.9 1.0
O1 A:HCA601 4.1 34.1 1.0
C2 A:HCA601 4.2 29.6 1.0
C4 A:HCA601 4.2 30.4 1.0
O5 A:HCA601 4.2 33.8 1.0
C5 A:HCA601 4.2 26.0 1.0
NE2 A:HIS442 4.4 29.5 1.0
CD2 A:HIS442 4.5 29.2 1.0
CA A:HIS442 4.5 21.5 1.0
C1 A:HCA601 4.6 31.9 1.0
S2B A:ICS600 4.8 28.0 1.0
S5A A:ICS600 4.8 32.2 1.0
S3A A:ICS600 4.9 29.7 1.0
O A:HOH766 4.9 32.8 1.0

Molybdenum binding site 2 out of 2 in 8dfd

Go back to Molybdenum Binding Sites List in 8dfd
Molybdenum binding site 2 out of 2 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mo600

b:45.8
occ:1.00
MO1 C:ICS600 0.0 45.8 1.0
O6 C:HCA601 2.2 37.9 1.0
O7 C:HCA601 2.2 34.8 1.0
ND1 C:HIS442 2.3 29.2 1.0
S4B C:ICS600 2.4 20.9 1.0
S1B C:ICS600 2.4 25.8 1.0
S3B C:ICS600 2.4 28.4 1.0
FE6 C:ICS600 2.7 45.4 1.0
FE7 C:ICS600 2.7 43.8 1.0
FE5 C:ICS600 2.7 52.2 1.0
C7 C:HCA601 3.0 29.4 1.0
C3 C:HCA601 3.1 35.8 1.0
CE1 C:HIS442 3.2 27.0 1.0
CG C:HIS442 3.4 25.6 1.0
CX C:ICS600 3.6 33.5 1.0
CB C:HIS442 3.7 31.5 1.0
O C:HOH754 4.0 16.6 1.0
O2 C:HCA601 4.1 36.6 1.0
C2 C:HCA601 4.1 30.8 1.0
O5 C:HCA601 4.2 36.9 1.0
C4 C:HCA601 4.2 31.7 1.0
NE2 C:HIS442 4.3 32.3 1.0
C5 C:HCA601 4.4 32.6 1.0
CD2 C:HIS442 4.5 31.1 1.0
CA C:HIS442 4.5 26.7 1.0
C1 C:HCA601 4.6 33.4 1.0
S2B C:ICS600 4.8 30.9 1.0
S5A C:ICS600 4.8 35.6 1.0
S3A C:ICS600 4.9 31.5 1.0
O C:HOH783 4.9 36.5 1.0

Reference:

R.A.Warmack, D.C.Rees. Anaerobic Single Particle Cryoem of Nitrogenase To Be Published.
Page generated: Sun Oct 6 17:40:01 2024

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