Atomistry » Molybdenum » PDB 8cff-9d2c » 8rhp
Atomistry »
  Molybdenum »
    PDB 8cff-9d2c »
      8rhp »

Molybdenum in PDB 8rhp: Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

Enzymatic activity of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

All present enzymatic activity of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii):
1.18.6.1;

Other elements in 8rhp:

The structure of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) also contains other interesting chemical elements:

Iron (Fe) 72 atoms
Calcium (Ca) 4 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) (pdb code 8rhp). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 4 binding sites of Molybdenum where determined in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii), PDB code: 8rhp:
Jump to Molybdenum binding site number: 1; 2; 3; 4;

Molybdenum binding site 1 out of 4 in 8rhp

Go back to Molybdenum Binding Sites List in 8rhp
Molybdenum binding site 1 out of 4 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo503

b:122.2
occ:1.00
MO1 A:ICS503 0.0 122.2 1.0
O7 A:HCA502 2.2 108.6 1.0
O5 A:HCA502 2.3 121.1 1.0
S1B A:ICS503 2.3 129.0 1.0
S4B A:ICS503 2.4 126.8 1.0
S3B A:ICS503 2.4 125.1 1.0
ND1 A:HIS442 2.4 94.7 1.0
FE7 A:ICS503 2.7 130.2 1.0
FE6 A:ICS503 2.7 107.8 1.0
FE5 A:ICS503 2.7 130.3 1.0
C7 A:HCA502 3.2 118.8 1.0
CE1 A:HIS442 3.2 99.7 1.0
C3 A:HCA502 3.2 114.0 1.0
CG A:HIS442 3.4 97.0 1.0
CX A:ICS503 3.6 121.1 1.0
CB A:HIS442 3.9 96.9 1.0
C2 A:HCA502 4.2 115.4 1.0
C4 A:HCA502 4.3 114.7 1.0
NE2 A:HIS442 4.3 106.8 1.0
C1 A:HCA502 4.4 120.5 1.0
O6 A:HCA502 4.4 125.5 1.0
CA A:HIS442 4.4 88.7 1.0
CD2 A:HIS442 4.5 104.9 1.0
O1 A:HCA502 4.5 123.1 1.0
C5 A:HCA502 4.6 116.4 1.0
S2B A:ICS503 4.8 104.7 1.0
S5A A:ICS503 4.8 125.0 1.0
O2 A:HCA502 4.8 121.1 1.0
S3A A:ICS503 4.9 129.8 1.0

Molybdenum binding site 2 out of 4 in 8rhp

Go back to Molybdenum Binding Sites List in 8rhp
Molybdenum binding site 2 out of 4 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mo502

b:111.0
occ:1.00
MO1 D:ICS502 0.0 111.0 1.0
O7 D:HCA501 2.2 121.5 1.0
O6 D:HCA501 2.2 122.5 1.0
S4B D:ICS502 2.3 118.7 1.0
S1B D:ICS502 2.3 100.8 1.0
S3B D:ICS502 2.3 107.5 1.0
ND1 D:HIS442 2.4 78.3 1.0
FE6 D:ICS502 2.6 106.3 1.0
FE7 D:ICS502 2.6 101.6 1.0
FE5 D:ICS502 2.8 110.9 1.0
C7 D:HCA501 3.1 127.3 1.0
CE1 D:HIS442 3.1 83.1 1.0
C3 D:HCA501 3.2 125.4 1.0
CX D:ICS502 3.5 105.9 1.0
CG D:HIS442 3.6 80.1 1.0
CB D:HIS442 4.0 80.1 1.0
C2 D:HCA501 4.1 126.7 1.0
O5 D:HCA501 4.2 133.3 1.0
O2 D:HCA501 4.3 129.9 1.0
C4 D:HCA501 4.3 127.5 1.0
NE2 D:HIS442 4.3 89.3 1.0
C5 D:HCA501 4.4 126.7 1.0
CD2 D:HIS442 4.6 88.2 1.0
C1 D:HCA501 4.6 127.2 1.0
CA D:HIS442 4.6 76.6 1.0
S2B D:ICS502 4.7 101.3 1.0
S5A D:ICS502 4.8 103.1 1.0
S3A D:ICS502 5.0 101.9 1.0

Molybdenum binding site 3 out of 4 in 8rhp

Go back to Molybdenum Binding Sites List in 8rhp
Molybdenum binding site 3 out of 4 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mo502

b:121.8
occ:1.00
MO1 H:ICS502 0.0 121.8 1.0
O5 H:HCA501 2.0 122.4 1.0
O7 H:HCA501 2.1 109.6 1.0
S1B H:ICS502 2.3 130.6 1.0
S4B H:ICS502 2.3 128.2 1.0
S3B H:ICS502 2.4 125.6 1.0
ND1 H:HIS442 2.5 95.2 1.0
FE6 H:ICS502 2.6 109.4 1.0
FE7 H:ICS502 2.6 132.9 1.0
FE5 H:ICS502 2.7 132.4 1.0
C7 H:HCA501 2.9 119.6 1.0
C3 H:HCA501 3.1 114.4 1.0
CE1 H:HIS442 3.3 100.6 1.0
CX H:ICS502 3.5 122.3 1.0
CG H:HIS442 3.5 97.6 1.0
CB H:HIS442 3.9 97.2 1.0
C2 H:HCA501 4.0 115.7 1.0
O6 H:HCA501 4.1 126.7 1.0
C1 H:HCA501 4.2 121.4 1.0
C4 H:HCA501 4.3 115.1 1.0
O1 H:HCA501 4.4 124.6 1.0
NE2 H:HIS442 4.5 108.3 1.0
CA H:HIS442 4.5 88.5 1.0
C5 H:HCA501 4.6 117.0 1.0
CD2 H:HIS442 4.6 106.1 1.0
S2B H:ICS502 4.7 104.6 1.0
S5A H:ICS502 4.8 125.7 1.0
O2 H:HCA501 4.8 122.2 1.0
S3A H:ICS502 4.9 130.6 1.0
FE2 H:ICS502 5.0 120.8 1.0

Molybdenum binding site 4 out of 4 in 8rhp

Go back to Molybdenum Binding Sites List in 8rhp
Molybdenum binding site 4 out of 4 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mo502

b:113.5
occ:1.00
MO1 K:ICS502 0.0 113.5 1.0
O7 K:HCA501 2.2 126.5 1.0
O6 K:HCA501 2.2 127.4 1.0
S4B K:ICS502 2.3 119.8 1.0
S1B K:ICS502 2.3 103.8 1.0
S3B K:ICS502 2.3 110.5 1.0
ND1 K:HIS442 2.5 82.6 1.0
FE6 K:ICS502 2.6 109.0 1.0
FE7 K:ICS502 2.7 104.7 1.0
FE5 K:ICS502 2.8 112.8 1.0
C7 K:HCA501 3.1 131.5 1.0
CE1 K:HIS442 3.2 86.0 1.0
C3 K:HCA501 3.2 129.9 1.0
CX K:ICS502 3.6 108.2 1.0
CG K:HIS442 3.6 83.9 1.0
CB K:HIS442 4.1 83.2 1.0
C2 K:HCA501 4.1 131.3 1.0
O5 K:HCA501 4.2 136.6 1.0
O2 K:HCA501 4.2 133.6 1.0
C4 K:HCA501 4.3 131.5 1.0
NE2 K:HIS442 4.4 91.3 1.0
C5 K:HCA501 4.4 131.0 1.0
C1 K:HCA501 4.5 131.4 1.0
CD2 K:HIS442 4.6 90.5 1.0
S2B K:ICS502 4.7 103.4 1.0
CA K:HIS442 4.7 79.9 1.0
S5A K:ICS502 4.8 106.5 1.0
S3A K:ICS502 4.9 104.5 1.0

Reference:

P.Franke, L.Zhang, O.Einsle. Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) To Be Published.
Page generated: Sat Feb 8 22:57:42 2025

Last articles

F in 7JK8
F in 7JHW
F in 7JHD
F in 7I18
F in 7I2F
F in 7I2M
F in 7I2A
F in 7I2D
F in 7HNS
F in 7HOG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy