Molybdenum in PDB 8rhp: Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

Enzymatic activity of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

All present enzymatic activity of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii):
1.18.6.1;

Other elements in 8rhp:

The structure of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) also contains other interesting chemical elements:

Iron	(Fe)	72 atoms
Calcium	(Ca)	4 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) (pdb code 8rhp). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 4 binding sites of Molybdenum where determined in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii), PDB code: 8rhp:
Jump to Molybdenum binding site number: 1; 2; 3; 4;

Molybdenum binding site 1 out of 4 in 8rhp

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Molybdenum Binding Sites List in 8rhp

Molybdenum binding site 1 out of 4 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

Mono view

Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mo503 b:122.2 occ:1.00	MO1	A:ICS503	0.0	122.2	1.0
	O7	A:HCA502	2.2	108.6	1.0
	O5	A:HCA502	2.3	121.1	1.0
	S1B	A:ICS503	2.3	129.0	1.0
	S4B	A:ICS503	2.4	126.8	1.0
	S3B	A:ICS503	2.4	125.1	1.0
	ND1	A:HIS442	2.4	94.7	1.0
	FE7	A:ICS503	2.7	130.2	1.0
	FE6	A:ICS503	2.7	107.8	1.0
	FE5	A:ICS503	2.7	130.3	1.0
	C7	A:HCA502	3.2	118.8	1.0
	CE1	A:HIS442	3.2	99.7	1.0
	C3	A:HCA502	3.2	114.0	1.0
	CG	A:HIS442	3.4	97.0	1.0
	CX	A:ICS503	3.6	121.1	1.0
	CB	A:HIS442	3.9	96.9	1.0
	C2	A:HCA502	4.2	115.4	1.0
	C4	A:HCA502	4.3	114.7	1.0
	NE2	A:HIS442	4.3	106.8	1.0
	C1	A:HCA502	4.4	120.5	1.0
	O6	A:HCA502	4.4	125.5	1.0
	CA	A:HIS442	4.4	88.7	1.0
	CD2	A:HIS442	4.5	104.9	1.0
	O1	A:HCA502	4.5	123.1	1.0
	C5	A:HCA502	4.6	116.4	1.0
	S2B	A:ICS503	4.8	104.7	1.0
	S5A	A:ICS503	4.8	125.0	1.0
	O2	A:HCA502	4.8	121.1	1.0
	S3A	A:ICS503	4.9	129.8	1.0

Molybdenum binding site 2 out of 4 in 8rhp

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Molybdenum Binding Sites List in 8rhp

Molybdenum binding site 2 out of 4 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

Mono view

Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mo502 b:111.0 occ:1.00	MO1	D:ICS502	0.0	111.0	1.0
	O7	D:HCA501	2.2	121.5	1.0
	O6	D:HCA501	2.2	122.5	1.0
	S4B	D:ICS502	2.3	118.7	1.0
	S1B	D:ICS502	2.3	100.8	1.0
	S3B	D:ICS502	2.3	107.5	1.0
	ND1	D:HIS442	2.4	78.3	1.0
	FE6	D:ICS502	2.6	106.3	1.0
	FE7	D:ICS502	2.6	101.6	1.0
	FE5	D:ICS502	2.8	110.9	1.0
	C7	D:HCA501	3.1	127.3	1.0
	CE1	D:HIS442	3.1	83.1	1.0
	C3	D:HCA501	3.2	125.4	1.0
	CX	D:ICS502	3.5	105.9	1.0
	CG	D:HIS442	3.6	80.1	1.0
	CB	D:HIS442	4.0	80.1	1.0
	C2	D:HCA501	4.1	126.7	1.0
	O5	D:HCA501	4.2	133.3	1.0
	O2	D:HCA501	4.3	129.9	1.0
	C4	D:HCA501	4.3	127.5	1.0
	NE2	D:HIS442	4.3	89.3	1.0
	C5	D:HCA501	4.4	126.7	1.0
	CD2	D:HIS442	4.6	88.2	1.0
	C1	D:HCA501	4.6	127.2	1.0
	CA	D:HIS442	4.6	76.6	1.0
	S2B	D:ICS502	4.7	101.3	1.0
	S5A	D:ICS502	4.8	103.1	1.0
	S3A	D:ICS502	5.0	101.9	1.0

Molybdenum binding site 3 out of 4 in 8rhp

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Molybdenum Binding Sites List in 8rhp

Molybdenum binding site 3 out of 4 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

Mono view

Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 3 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
H:Mo502 b:121.8 occ:1.00	MO1	H:ICS502	0.0	121.8	1.0
	O5	H:HCA501	2.0	122.4	1.0
	O7	H:HCA501	2.1	109.6	1.0
	S1B	H:ICS502	2.3	130.6	1.0
	S4B	H:ICS502	2.3	128.2	1.0
	S3B	H:ICS502	2.4	125.6	1.0
	ND1	H:HIS442	2.5	95.2	1.0
	FE6	H:ICS502	2.6	109.4	1.0
	FE7	H:ICS502	2.6	132.9	1.0
	FE5	H:ICS502	2.7	132.4	1.0
	C7	H:HCA501	2.9	119.6	1.0
	C3	H:HCA501	3.1	114.4	1.0
	CE1	H:HIS442	3.3	100.6	1.0
	CX	H:ICS502	3.5	122.3	1.0
	CG	H:HIS442	3.5	97.6	1.0
	CB	H:HIS442	3.9	97.2	1.0
	C2	H:HCA501	4.0	115.7	1.0
	O6	H:HCA501	4.1	126.7	1.0
	C1	H:HCA501	4.2	121.4	1.0
	C4	H:HCA501	4.3	115.1	1.0
	O1	H:HCA501	4.4	124.6	1.0
	NE2	H:HIS442	4.5	108.3	1.0
	CA	H:HIS442	4.5	88.5	1.0
	C5	H:HCA501	4.6	117.0	1.0
	CD2	H:HIS442	4.6	106.1	1.0
	S2B	H:ICS502	4.7	104.6	1.0
	S5A	H:ICS502	4.8	125.7	1.0
	O2	H:HCA501	4.8	122.2	1.0
	S3A	H:ICS502	4.9	130.6	1.0
	FE2	H:ICS502	5.0	120.8	1.0

Molybdenum binding site 4 out of 4 in 8rhp

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Molybdenum Binding Sites List in 8rhp

Molybdenum binding site 4 out of 4 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

Mono view

Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 4 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
K:Mo502 b:113.5 occ:1.00	MO1	K:ICS502	0.0	113.5	1.0
	O7	K:HCA501	2.2	126.5	1.0
	O6	K:HCA501	2.2	127.4	1.0
	S4B	K:ICS502	2.3	119.8	1.0
	S1B	K:ICS502	2.3	103.8	1.0
	S3B	K:ICS502	2.3	110.5	1.0
	ND1	K:HIS442	2.5	82.6	1.0
	FE6	K:ICS502	2.6	109.0	1.0
	FE7	K:ICS502	2.7	104.7	1.0
	FE5	K:ICS502	2.8	112.8	1.0
	C7	K:HCA501	3.1	131.5	1.0
	CE1	K:HIS442	3.2	86.0	1.0
	C3	K:HCA501	3.2	129.9	1.0
	CX	K:ICS502	3.6	108.2	1.0
	CG	K:HIS442	3.6	83.9	1.0
	CB	K:HIS442	4.1	83.2	1.0
	C2	K:HCA501	4.1	131.3	1.0
	O5	K:HCA501	4.2	136.6	1.0
	O2	K:HCA501	4.2	133.6	1.0
	C4	K:HCA501	4.3	131.5	1.0
	NE2	K:HIS442	4.4	91.3	1.0
	C5	K:HCA501	4.4	131.0	1.0
	C1	K:HCA501	4.5	131.4	1.0
	CD2	K:HIS442	4.6	90.5	1.0
	S2B	K:ICS502	4.7	103.4	1.0
	CA	K:HIS442	4.7	79.9	1.0
	S5A	K:ICS502	4.8	106.5	1.0
	S3A	K:ICS502	4.9	104.5	1.0

Reference:

P.Franke, L.Zhang, O.Einsle. Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) To Be Published.

Page generated: Sat Feb 8 22:57:42 2025

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