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Molybdenum in PDB 8uem: The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis

Other elements in 8uem:

The structure of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis also contains other interesting chemical elements:

Iron (Fe) 8 atoms
Copper (Cu) 2 atoms

Molybdenum Binding Sites:

The binding sites of Molybdenum atom in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis (pdb code 8uem). This binding sites where shown within 5.0 Angstroms radius around Molybdenum atom.
In total 2 binding sites of Molybdenum where determined in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis, PDB code: 8uem:
Jump to Molybdenum binding site number: 1; 2;

Molybdenum binding site 1 out of 2 in 8uem

Go back to Molybdenum Binding Sites List in 8uem
Molybdenum binding site 1 out of 2 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 1 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mo801

b:14.2
occ:1.00
MO A:CUN801 0.0 14.2 1.0
OM1 A:CUN801 1.8 21.7 1.0
OM2 A:CUN801 2.1 19.5 1.0
S A:CUN801 2.3 19.6 1.0
S7' A:MCN802 2.5 24.2 1.0
S8' A:MCN802 2.5 42.6 1.0
HO2 A:CUN801 2.7 19.7 1.0
OE2 A:GLU752 3.2 16.7 1.0
C7' A:MCN802 3.2 98.4 1.0
C8' A:MCN802 3.3 88.4 1.0
N A:GLY556 3.7 6.8 1.0
CD A:GLU752 3.8 13.8 1.0
CA A:TYR555 3.8 9.3 1.0
O A:HOH1060 3.9 16.6 1.0
CB A:TYR555 3.9 9.8 1.0
CU A:CUN801 3.9 45.7 1.0
CA A:GLY265 3.9 3.6 1.0
N A:GLY265 4.0 2.7 1.0
C A:TYR555 4.3 9.0 1.0
N A:ALA380 4.3 10.8 1.0
CA A:ALA380 4.3 9.5 1.0
C A:PHE264 4.3 5.0 1.0
OE1 A:GLU752 4.4 16.3 1.0
CG A:GLU752 4.4 10.9 1.0
NE2 A:GLN233 4.5 6.8 1.0
O A:PHE264 4.6 10.4 1.0
C6' A:MCN802 4.7 103.4 1.0
C9' A:MCN802 4.7 96.0 1.0
CA A:GLY556 4.8 10.9 1.0
CA A:PHE264 5.0 10.1 1.0

Molybdenum binding site 2 out of 2 in 8uem

Go back to Molybdenum Binding Sites List in 8uem
Molybdenum binding site 2 out of 2 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Molybdenum with other atoms in the Mo binding site number 2 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mo801

b:13.7
occ:1.00
MO D:CUN801 0.0 13.7 1.0
OM1 D:CUN801 1.8 21.0 1.0
OM2 D:CUN801 2.1 19.5 1.0
S D:CUN801 2.3 18.4 1.0
S7' D:MCN802 2.7 25.9 1.0
S8' D:MCN802 2.7 42.3 1.0
HO2 D:CUN801 2.7 19.1 1.0
OE2 D:GLU752 3.1 15.6 1.0
C7' D:MCN802 3.3 98.9 1.0
C8' D:MCN802 3.4 87.8 1.0
N D:GLY556 3.6 7.3 1.0
CD D:GLU752 3.8 14.1 1.0
CA D:TYR555 3.8 9.1 1.0
CB D:TYR555 3.8 9.4 1.0
N D:GLY265 3.9 3.7 1.0
CA D:GLY265 3.9 3.6 1.0
CU D:CUN801 3.9 45.3 1.0
O D:HOH1021 3.9 17.2 1.0
C D:TYR555 4.2 8.7 1.0
N D:ALA380 4.3 11.1 1.0
C D:PHE264 4.3 5.1 1.0
CA D:ALA380 4.3 9.2 1.0
CG D:GLU752 4.4 10.7 1.0
NE2 D:GLN233 4.4 6.6 1.0
OE1 D:GLU752 4.4 17.3 1.0
CA D:GLY556 4.7 11.6 1.0
O D:PHE264 4.7 10.6 1.0
C6' D:MCN802 4.7 103.3 1.0
C9' D:MCN802 4.8 95.2 1.0
CA D:PHE264 4.9 10.2 1.0
C10 D:MCN802 5.0 97.5 1.0

Reference:

D.Gillett, A.Kropp, H.Venugopal, C.Barlow, C.Greening, R.Grinter. Structural Basis For Bacterial Energy Extraction From Atmospheric Hydrogen To Be Published.
Page generated: Thu Oct 31 22:46:38 2024

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